Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G41100

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000630: positive regulation of miRNA metabolic process0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0070328: triglyceride homeostasis0.00E+00
4GO:0055091: phospholipid homeostasis0.00E+00
5GO:0080050: regulation of seed development0.00E+00
6GO:0042353: fucose biosynthetic process0.00E+00
7GO:0034775: glutathione transmembrane transport0.00E+00
8GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
9GO:2000636: positive regulation of primary miRNA processing0.00E+00
10GO:0010046: response to mycotoxin0.00E+00
11GO:0046967: cytosol to ER transport0.00E+00
12GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
13GO:0010200: response to chitin2.20E-09
14GO:0006468: protein phosphorylation2.41E-09
15GO:0009611: response to wounding2.97E-08
16GO:0006955: immune response6.73E-06
17GO:0042344: indole glucosinolate catabolic process1.77E-05
18GO:0052544: defense response by callose deposition in cell wall4.47E-05
19GO:0006470: protein dephosphorylation7.23E-05
20GO:0035556: intracellular signal transduction1.25E-04
21GO:0009863: salicylic acid mediated signaling pathway1.36E-04
22GO:0010337: regulation of salicylic acid metabolic process1.58E-04
23GO:0006751: glutathione catabolic process1.58E-04
24GO:0031408: oxylipin biosynthetic process1.80E-04
25GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.80E-04
26GO:0051180: vitamin transport3.32E-04
27GO:0030974: thiamine pyrophosphate transport3.32E-04
28GO:0046938: phytochelatin biosynthetic process3.32E-04
29GO:0051446: positive regulation of meiotic cell cycle3.32E-04
30GO:0009865: pollen tube adhesion3.32E-04
31GO:0050691: regulation of defense response to virus by host3.32E-04
32GO:0006680: glucosylceramide catabolic process3.32E-04
33GO:0090421: embryonic meristem initiation3.32E-04
34GO:2000070: regulation of response to water deprivation3.52E-04
35GO:0010193: response to ozone4.71E-04
36GO:0010468: regulation of gene expression4.93E-04
37GO:0009737: response to abscisic acid5.23E-04
38GO:2000280: regulation of root development6.12E-04
39GO:0055088: lipid homeostasis7.24E-04
40GO:2000030: regulation of response to red or far red light7.24E-04
41GO:0006898: receptor-mediated endocytosis7.24E-04
42GO:0015893: drug transport7.24E-04
43GO:0052542: defense response by callose deposition7.24E-04
44GO:0046740: transport of virus in host, cell to cell7.24E-04
45GO:0008616: queuosine biosynthetic process7.24E-04
46GO:0031407: oxylipin metabolic process7.24E-04
47GO:0042754: negative regulation of circadian rhythm7.24E-04
48GO:0010289: homogalacturonan biosynthetic process7.24E-04
49GO:0007000: nucleolus organization7.24E-04
50GO:0018105: peptidyl-serine phosphorylation8.37E-04
51GO:0006970: response to osmotic stress8.92E-04
52GO:0080168: abscisic acid transport1.17E-03
53GO:0051211: anisotropic cell growth1.17E-03
54GO:0000280: nuclear division1.17E-03
55GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.17E-03
56GO:0016045: detection of bacterium1.17E-03
57GO:0010359: regulation of anion channel activity1.17E-03
58GO:0046786: viral replication complex formation and maintenance1.17E-03
59GO:0045793: positive regulation of cell size1.17E-03
60GO:0090630: activation of GTPase activity1.17E-03
61GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid1.17E-03
62GO:0006952: defense response1.25E-03
63GO:0070588: calcium ion transmembrane transport1.34E-03
64GO:0009969: xyloglucan biosynthetic process1.34E-03
65GO:0009738: abscisic acid-activated signaling pathway1.62E-03
66GO:2000377: regulation of reactive oxygen species metabolic process1.65E-03
67GO:0033014: tetrapyrrole biosynthetic process1.68E-03
68GO:0030100: regulation of endocytosis1.68E-03
69GO:0015696: ammonium transport1.68E-03
70GO:0048530: fruit morphogenesis1.68E-03
71GO:0015700: arsenite transport1.68E-03
72GO:0055089: fatty acid homeostasis1.68E-03
73GO:0010071: root meristem specification1.68E-03
74GO:0009695: jasmonic acid biosynthetic process1.82E-03
75GO:0051707: response to other organism1.95E-03
76GO:0009751: response to salicylic acid2.20E-03
77GO:0045727: positive regulation of translation2.26E-03
78GO:0072488: ammonium transmembrane transport2.26E-03
79GO:0010107: potassium ion import2.26E-03
80GO:0034440: lipid oxidation2.26E-03
81GO:1902347: response to strigolactone2.26E-03
82GO:0009694: jasmonic acid metabolic process2.26E-03
83GO:0009652: thigmotropism2.26E-03
84GO:0009617: response to bacterium2.39E-03
85GO:0032957: inositol trisphosphate metabolic process2.89E-03
86GO:0006873: cellular ion homeostasis2.89E-03
87GO:0045487: gibberellin catabolic process2.89E-03
88GO:0006665: sphingolipid metabolic process2.89E-03
89GO:0009873: ethylene-activated signaling pathway3.55E-03
90GO:0047484: regulation of response to osmotic stress3.57E-03
91GO:0010256: endomembrane system organization3.57E-03
92GO:0009749: response to glucose3.76E-03
93GO:0009620: response to fungus3.98E-03
94GO:1901001: negative regulation of response to salt stress4.30E-03
95GO:2000033: regulation of seed dormancy process4.30E-03
96GO:0080113: regulation of seed growth4.30E-03
97GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.30E-03
98GO:0010555: response to mannitol4.30E-03
99GO:0080086: stamen filament development4.30E-03
100GO:2000067: regulation of root morphogenesis4.30E-03
101GO:0009639: response to red or far red light4.88E-03
102GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway5.07E-03
103GO:1900057: positive regulation of leaf senescence5.07E-03
104GO:0010161: red light signaling pathway5.07E-03
105GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.20E-03
106GO:0000398: mRNA splicing, via spliceosome5.36E-03
107GO:0046777: protein autophosphorylation5.47E-03
108GO:0006355: regulation of transcription, DNA-templated5.61E-03
109GO:0016310: phosphorylation5.86E-03
110GO:0007155: cell adhesion5.89E-03
111GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.89E-03
112GO:1900150: regulation of defense response to fungus5.89E-03
113GO:0010078: maintenance of root meristem identity5.89E-03
114GO:0010492: maintenance of shoot apical meristem identity5.89E-03
115GO:0010029: regulation of seed germination6.16E-03
116GO:0009880: embryonic pattern specification6.76E-03
117GO:0007186: G-protein coupled receptor signaling pathway6.76E-03
118GO:0009699: phenylpropanoid biosynthetic process6.76E-03
119GO:0042742: defense response to bacterium6.97E-03
120GO:0008219: cell death7.61E-03
121GO:0046685: response to arsenic-containing substance7.67E-03
122GO:0006783: heme biosynthetic process7.67E-03
123GO:0001708: cell fate specification7.67E-03
124GO:0098656: anion transmembrane transport7.67E-03
125GO:0045893: positive regulation of transcription, DNA-templated7.88E-03
126GO:0006811: ion transport8.40E-03
127GO:0006779: porphyrin-containing compound biosynthetic process8.61E-03
128GO:0010018: far-red light signaling pathway8.61E-03
129GO:0048268: clathrin coat assembly8.61E-03
130GO:0007346: regulation of mitotic cell cycle8.61E-03
131GO:0006351: transcription, DNA-templated8.71E-03
132GO:0048364: root development9.53E-03
133GO:0055062: phosphate ion homeostasis9.61E-03
134GO:0006782: protoporphyrinogen IX biosynthetic process9.61E-03
135GO:0019538: protein metabolic process9.61E-03
136GO:0010629: negative regulation of gene expression9.61E-03
137GO:0009682: induced systemic resistance1.06E-02
138GO:0009750: response to fructose1.06E-02
139GO:0007166: cell surface receptor signaling pathway1.06E-02
140GO:0010015: root morphogenesis1.06E-02
141GO:0007165: signal transduction1.09E-02
142GO:0006897: endocytosis1.15E-02
143GO:0010105: negative regulation of ethylene-activated signaling pathway1.17E-02
144GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.17E-02
145GO:0071365: cellular response to auxin stimulus1.17E-02
146GO:0000266: mitochondrial fission1.17E-02
147GO:0009651: response to salt stress1.21E-02
148GO:0009640: photomorphogenesis1.25E-02
149GO:0009409: response to cold1.26E-02
150GO:0018107: peptidyl-threonine phosphorylation1.28E-02
151GO:0055046: microgametogenesis1.28E-02
152GO:0048467: gynoecium development1.40E-02
153GO:0002237: response to molecule of bacterial origin1.40E-02
154GO:0031347: regulation of defense response1.51E-02
155GO:0080188: RNA-directed DNA methylation1.51E-02
156GO:0009901: anther dehiscence1.51E-02
157GO:0071732: cellular response to nitric oxide1.51E-02
158GO:0042753: positive regulation of circadian rhythm1.63E-02
159GO:0009585: red, far-red light phototransduction1.69E-02
160GO:0010224: response to UV-B1.75E-02
161GO:0010187: negative regulation of seed germination1.76E-02
162GO:0009723: response to ethylene1.88E-02
163GO:0043622: cortical microtubule organization1.89E-02
164GO:0051302: regulation of cell division1.89E-02
165GO:0051321: meiotic cell cycle2.02E-02
166GO:0016998: cell wall macromolecule catabolic process2.02E-02
167GO:0009626: plant-type hypersensitive response2.13E-02
168GO:0030245: cellulose catabolic process2.15E-02
169GO:0010017: red or far-red light signaling pathway2.15E-02
170GO:0030433: ubiquitin-dependent ERAD pathway2.15E-02
171GO:0031348: negative regulation of defense response2.15E-02
172GO:0009686: gibberellin biosynthetic process2.29E-02
173GO:0071369: cellular response to ethylene stimulus2.29E-02
174GO:0040007: growth2.29E-02
175GO:0001944: vasculature development2.29E-02
176GO:0009624: response to nematode2.41E-02
177GO:0010584: pollen exine formation2.43E-02
178GO:0006817: phosphate ion transport2.43E-02
179GO:0048443: stamen development2.43E-02
180GO:0019722: calcium-mediated signaling2.43E-02
181GO:0010089: xylem development2.43E-02
182GO:0009742: brassinosteroid mediated signaling pathway2.55E-02
183GO:0042147: retrograde transport, endosome to Golgi2.57E-02
184GO:0008284: positive regulation of cell proliferation2.57E-02
185GO:0045454: cell redox homeostasis2.58E-02
186GO:0000271: polysaccharide biosynthetic process2.72E-02
187GO:0080022: primary root development2.72E-02
188GO:0010118: stomatal movement2.72E-02
189GO:0048653: anther development2.72E-02
190GO:0009960: endosperm development2.87E-02
191GO:0009958: positive gravitropism2.87E-02
192GO:0045489: pectin biosynthetic process2.87E-02
193GO:0048868: pollen tube development2.87E-02
194GO:0048544: recognition of pollen3.02E-02
195GO:0006814: sodium ion transport3.02E-02
196GO:0008654: phospholipid biosynthetic process3.18E-02
197GO:0009845: seed germination3.26E-02
198GO:0006891: intra-Golgi vesicle-mediated transport3.33E-02
199GO:0009630: gravitropism3.49E-02
200GO:0009790: embryo development3.51E-02
201GO:0009753: response to jasmonic acid3.65E-02
202GO:0071281: cellular response to iron ion3.66E-02
203GO:0010090: trichome morphogenesis3.66E-02
204GO:1901657: glycosyl compound metabolic process3.66E-02
205GO:0019760: glucosinolate metabolic process3.82E-02
206GO:0006904: vesicle docking involved in exocytosis3.99E-02
207GO:0007623: circadian rhythm4.15E-02
208GO:0010150: leaf senescence4.15E-02
209GO:0000910: cytokinesis4.16E-02
210GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.51E-02
211GO:0009816: defense response to bacterium, incompatible interaction4.51E-02
212GO:0009627: systemic acquired resistance4.68E-02
213GO:0015995: chlorophyll biosynthetic process4.86E-02
214GO:0010411: xyloglucan metabolic process4.86E-02
RankGO TermAdjusted P value
1GO:0004698: calcium-dependent protein kinase C activity0.00E+00
2GO:0070566: adenylyltransferase activity0.00E+00
3GO:0008419: RNA lariat debranching enzyme activity0.00E+00
4GO:0017048: Rho GTPase binding0.00E+00
5GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
6GO:0080123: jasmonate-amino synthetase activity0.00E+00
7GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
8GO:0010857: calcium-dependent protein kinase activity0.00E+00
9GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.92E-07
10GO:0016301: kinase activity1.96E-06
11GO:0016629: 12-oxophytodienoate reductase activity4.99E-06
12GO:0003840: gamma-glutamyltransferase activity1.77E-05
13GO:0036374: glutathione hydrolase activity1.77E-05
14GO:0004672: protein kinase activity4.00E-05
15GO:0004722: protein serine/threonine phosphatase activity8.33E-05
16GO:0005524: ATP binding1.31E-04
17GO:0090422: thiamine pyrophosphate transporter activity3.32E-04
18GO:0015085: calcium ion transmembrane transporter activity3.32E-04
19GO:0046870: cadmium ion binding3.32E-04
20GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity3.32E-04
21GO:0015446: ATPase-coupled arsenite transmembrane transporter activity3.32E-04
22GO:0004348: glucosylceramidase activity3.32E-04
23GO:0071992: phytochelatin transmembrane transporter activity3.32E-04
24GO:0090440: abscisic acid transporter activity3.32E-04
25GO:0008479: queuine tRNA-ribosyltransferase activity7.24E-04
26GO:0017022: myosin binding7.24E-04
27GO:0004103: choline kinase activity7.24E-04
28GO:0008883: glutamyl-tRNA reductase activity7.24E-04
29GO:0001047: core promoter binding7.24E-04
30GO:0017040: ceramidase activity7.24E-04
31GO:0004674: protein serine/threonine kinase activity8.63E-04
32GO:0004683: calmodulin-dependent protein kinase activity9.24E-04
33GO:0019888: protein phosphatase regulator activity1.06E-03
34GO:0005516: calmodulin binding1.16E-03
35GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.17E-03
36GO:0031683: G-protein beta/gamma-subunit complex binding1.17E-03
37GO:0004383: guanylate cyclase activity1.17E-03
38GO:0016165: linoleate 13S-lipoxygenase activity1.17E-03
39GO:0047325: inositol tetrakisphosphate 1-kinase activity1.17E-03
40GO:0001664: G-protein coupled receptor binding1.17E-03
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.64E-03
42GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity1.68E-03
43GO:0001653: peptide receptor activity1.68E-03
44GO:0033843: xyloglucan 6-xylosyltransferase activity1.68E-03
45GO:0048487: beta-tubulin binding1.68E-03
46GO:0005432: calcium:sodium antiporter activity1.68E-03
47GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.68E-03
48GO:0044212: transcription regulatory region DNA binding2.22E-03
49GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.26E-03
50GO:0003700: transcription factor activity, sequence-specific DNA binding2.36E-03
51GO:0043565: sequence-specific DNA binding2.41E-03
52GO:0009922: fatty acid elongase activity2.89E-03
53GO:0004623: phospholipase A2 activity2.89E-03
54GO:0018685: alkane 1-monooxygenase activity2.89E-03
55GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.89E-03
56GO:0010181: FMN binding3.51E-03
57GO:0019137: thioglucosidase activity3.57E-03
58GO:0008519: ammonium transmembrane transporter activity3.57E-03
59GO:0019900: kinase binding4.30E-03
60GO:0051020: GTPase binding4.30E-03
61GO:0102425: myricetin 3-O-glucosyltransferase activity5.07E-03
62GO:0102360: daphnetin 3-O-glucosyltransferase activity5.07E-03
63GO:0016621: cinnamoyl-CoA reductase activity5.07E-03
64GO:0019899: enzyme binding5.07E-03
65GO:0004143: diacylglycerol kinase activity5.07E-03
66GO:0046872: metal ion binding5.15E-03
67GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.19E-03
68GO:0016758: transferase activity, transferring hexosyl groups5.75E-03
69GO:0047893: flavonol 3-O-glucosyltransferase activity5.89E-03
70GO:0015491: cation:cation antiporter activity5.89E-03
71GO:0009931: calcium-dependent protein serine/threonine kinase activity6.51E-03
72GO:0008308: voltage-gated anion channel activity6.76E-03
73GO:0003951: NAD+ kinase activity6.76E-03
74GO:0102483: scopolin beta-glucosidase activity6.87E-03
75GO:0004721: phosphoprotein phosphatase activity6.87E-03
76GO:0000989: transcription factor activity, transcription factor binding7.67E-03
77GO:0005096: GTPase activator activity8.00E-03
78GO:0005545: 1-phosphatidylinositol binding9.61E-03
79GO:0008422: beta-glucosidase activity1.06E-02
80GO:0005515: protein binding1.22E-02
81GO:0005388: calcium-transporting ATPase activity1.28E-02
82GO:0005315: inorganic phosphate transmembrane transporter activity1.28E-02
83GO:0005262: calcium channel activity1.28E-02
84GO:0004842: ubiquitin-protein transferase activity1.31E-02
85GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.63E-02
86GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.63E-02
87GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.63E-02
88GO:0004857: enzyme inhibitor activity1.76E-02
89GO:0005509: calcium ion binding1.83E-02
90GO:0035251: UDP-glucosyltransferase activity2.02E-02
91GO:0004707: MAP kinase activity2.02E-02
92GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.15E-02
93GO:0008514: organic anion transmembrane transporter activity2.43E-02
94GO:0030276: clathrin binding2.87E-02
95GO:0050662: coenzyme binding3.02E-02
96GO:0003924: GTPase activity3.34E-02
97GO:0015297: antiporter activity3.96E-02
98GO:0016722: oxidoreductase activity, oxidizing metal ions3.99E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle3.32E-04
2GO:0005634: nucleus4.17E-04
3GO:0030133: transport vesicle7.24E-04
4GO:0000159: protein phosphatase type 2A complex8.23E-04
5GO:0070062: extracellular exosome1.68E-03
6GO:0045177: apical part of cell1.68E-03
7GO:0005768: endosome1.76E-03
8GO:0030136: clathrin-coated vesicle2.80E-03
9GO:0031463: Cul3-RING ubiquitin ligase complex3.57E-03
10GO:0030173: integral component of Golgi membrane4.30E-03
11GO:0016604: nuclear body8.61E-03
12GO:0015030: Cajal body8.61E-03
13GO:0031902: late endosome membrane1.15E-02
14GO:0090406: pollen tube1.25E-02
15GO:0005938: cell cortex1.28E-02
16GO:0005802: trans-Golgi network1.40E-02
17GO:0016021: integral component of membrane1.82E-02
18GO:0005681: spliceosomal complex2.00E-02
19GO:0005905: clathrin-coated pit2.02E-02
20GO:0016607: nuclear speck2.06E-02
21GO:0010008: endosome membrane2.06E-02
22GO:0005770: late endosome2.87E-02
23GO:0005886: plasma membrane2.92E-02
24GO:0005737: cytoplasm3.42E-02
25GO:0000139: Golgi membrane3.48E-02
26GO:0000145: exocyst3.49E-02
27GO:0032580: Golgi cisterna membrane3.82E-02
28GO:0005778: peroxisomal membrane3.99E-02
29GO:0005794: Golgi apparatus4.00E-02
30GO:0005667: transcription factor complex4.68E-02
31GO:0005622: intracellular4.89E-02
<
Gene type



Gene DE type