GO Enrichment Analysis of Co-expressed Genes with
AT5G41050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 2 | GO:0090391: granum assembly | 1.22E-06 |
| 3 | GO:0015979: photosynthesis | 1.34E-06 |
| 4 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 2.91E-06 |
| 5 | GO:0016123: xanthophyll biosynthetic process | 9.33E-06 |
| 6 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.58E-05 |
| 7 | GO:1904964: positive regulation of phytol biosynthetic process | 7.58E-05 |
| 8 | GO:0042371: vitamin K biosynthetic process | 7.58E-05 |
| 9 | GO:0071277: cellular response to calcium ion | 7.58E-05 |
| 10 | GO:0006006: glucose metabolic process | 1.36E-04 |
| 11 | GO:0019253: reductive pentose-phosphate cycle | 1.55E-04 |
| 12 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.81E-04 |
| 13 | GO:0034755: iron ion transmembrane transport | 1.81E-04 |
| 14 | GO:0007017: microtubule-based process | 2.44E-04 |
| 15 | GO:0006013: mannose metabolic process | 3.05E-04 |
| 16 | GO:0009102: biotin biosynthetic process | 4.41E-04 |
| 17 | GO:0090307: mitotic spindle assembly | 4.41E-04 |
| 18 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 4.41E-04 |
| 19 | GO:0031122: cytoplasmic microtubule organization | 5.87E-04 |
| 20 | GO:0009765: photosynthesis, light harvesting | 5.87E-04 |
| 21 | GO:0016120: carotene biosynthetic process | 7.44E-04 |
| 22 | GO:0009643: photosynthetic acclimation | 9.07E-04 |
| 23 | GO:0018298: protein-chromophore linkage | 1.00E-03 |
| 24 | GO:0015977: carbon fixation | 1.08E-03 |
| 25 | GO:0009658: chloroplast organization | 1.14E-03 |
| 26 | GO:0009772: photosynthetic electron transport in photosystem II | 1.26E-03 |
| 27 | GO:0010196: nonphotochemical quenching | 1.26E-03 |
| 28 | GO:0009704: de-etiolation | 1.46E-03 |
| 29 | GO:0048564: photosystem I assembly | 1.46E-03 |
| 30 | GO:0042255: ribosome assembly | 1.46E-03 |
| 31 | GO:0006353: DNA-templated transcription, termination | 1.46E-03 |
| 32 | GO:0080167: response to karrikin | 1.48E-03 |
| 33 | GO:0090333: regulation of stomatal closure | 1.87E-03 |
| 34 | GO:0000373: Group II intron splicing | 1.87E-03 |
| 35 | GO:0009051: pentose-phosphate shunt, oxidative branch | 1.87E-03 |
| 36 | GO:0006949: syncytium formation | 2.32E-03 |
| 37 | GO:0006879: cellular iron ion homeostasis | 2.56E-03 |
| 38 | GO:0009773: photosynthetic electron transport in photosystem I | 2.56E-03 |
| 39 | GO:0045037: protein import into chloroplast stroma | 2.80E-03 |
| 40 | GO:0009725: response to hormone | 3.06E-03 |
| 41 | GO:0009767: photosynthetic electron transport chain | 3.06E-03 |
| 42 | GO:0010207: photosystem II assembly | 3.32E-03 |
| 43 | GO:0080147: root hair cell development | 4.15E-03 |
| 44 | GO:0080092: regulation of pollen tube growth | 5.03E-03 |
| 45 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.34E-03 |
| 46 | GO:0016117: carotenoid biosynthetic process | 5.98E-03 |
| 47 | GO:0008033: tRNA processing | 6.31E-03 |
| 48 | GO:0048868: pollen tube development | 6.64E-03 |
| 49 | GO:0015986: ATP synthesis coupled proton transport | 6.99E-03 |
| 50 | GO:0010193: response to ozone | 7.69E-03 |
| 51 | GO:0032502: developmental process | 8.05E-03 |
| 52 | GO:0009828: plant-type cell wall loosening | 8.79E-03 |
| 53 | GO:0009793: embryo development ending in seed dormancy | 9.42E-03 |
| 54 | GO:0010027: thylakoid membrane organization | 9.95E-03 |
| 55 | GO:0009817: defense response to fungus, incompatible interaction | 1.20E-02 |
| 56 | GO:0010218: response to far red light | 1.28E-02 |
| 57 | GO:0007568: aging | 1.33E-02 |
| 58 | GO:0009637: response to blue light | 1.42E-02 |
| 59 | GO:0009853: photorespiration | 1.42E-02 |
| 60 | GO:0010114: response to red light | 1.70E-02 |
| 61 | GO:0009744: response to sucrose | 1.70E-02 |
| 62 | GO:0009644: response to high light intensity | 1.79E-02 |
| 63 | GO:0009664: plant-type cell wall organization | 1.99E-02 |
| 64 | GO:0010224: response to UV-B | 2.15E-02 |
| 65 | GO:0006096: glycolytic process | 2.36E-02 |
| 66 | GO:0009735: response to cytokinin | 2.41E-02 |
| 67 | GO:0009553: embryo sac development | 2.64E-02 |
| 68 | GO:0055085: transmembrane transport | 3.34E-02 |
| 69 | GO:0009790: embryo development | 3.53E-02 |
| 70 | GO:0055114: oxidation-reduction process | 3.61E-02 |
| 71 | GO:0007623: circadian rhythm | 3.98E-02 |
| 72 | GO:0009451: RNA modification | 4.04E-02 |
| 73 | GO:0008380: RNA splicing | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.57E-06 |
| 5 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.01E-04 |
| 6 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.81E-04 |
| 7 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.05E-04 |
| 8 | GO:0022891: substrate-specific transmembrane transporter activity | 3.24E-04 |
| 9 | GO:0016984: ribulose-bisphosphate carboxylase activity | 4.41E-04 |
| 10 | GO:0019843: rRNA binding | 4.42E-04 |
| 11 | GO:0048038: quinone binding | 5.45E-04 |
| 12 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 5.87E-04 |
| 13 | GO:0043015: gamma-tubulin binding | 5.87E-04 |
| 14 | GO:0043495: protein anchor | 5.87E-04 |
| 15 | GO:0051011: microtubule minus-end binding | 7.44E-04 |
| 16 | GO:0016168: chlorophyll binding | 8.20E-04 |
| 17 | GO:0004559: alpha-mannosidase activity | 1.08E-03 |
| 18 | GO:0015631: tubulin binding | 1.08E-03 |
| 19 | GO:0019899: enzyme binding | 1.26E-03 |
| 20 | GO:0050661: NADP binding | 1.42E-03 |
| 21 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.73E-03 |
| 22 | GO:0005381: iron ion transmembrane transporter activity | 2.09E-03 |
| 23 | GO:0003690: double-stranded DNA binding | 2.22E-03 |
| 24 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 3.32E-03 |
| 25 | GO:0005528: FK506 binding | 4.15E-03 |
| 26 | GO:0003727: single-stranded RNA binding | 5.66E-03 |
| 27 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.64E-03 |
| 28 | GO:0004872: receptor activity | 7.34E-03 |
| 29 | GO:0005200: structural constituent of cytoskeleton | 9.17E-03 |
| 30 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.55E-02 |
| 31 | GO:0009055: electron carrier activity | 1.59E-02 |
| 32 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.89E-02 |
| 33 | GO:0051287: NAD binding | 1.94E-02 |
| 34 | GO:0003777: microtubule motor activity | 2.25E-02 |
| 35 | GO:0003735: structural constituent of ribosome | 2.91E-02 |
| 36 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.22E-02 |
| 37 | GO:0008565: protein transporter activity | 3.59E-02 |
| 38 | GO:0042802: identical protein binding | 4.71E-02 |
| 39 | GO:0005509: calcium ion binding | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.29E-23 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.39E-17 |
| 3 | GO:0009579: thylakoid | 3.81E-13 |
| 4 | GO:0009941: chloroplast envelope | 3.69E-10 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.46E-06 |
| 6 | GO:0030286: dynein complex | 5.57E-06 |
| 7 | GO:0009654: photosystem II oxygen evolving complex | 6.09E-06 |
| 8 | GO:0009570: chloroplast stroma | 1.69E-05 |
| 9 | GO:0009534: chloroplast thylakoid | 2.50E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.84E-05 |
| 11 | GO:0009515: granal stacked thylakoid | 7.58E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 1.55E-04 |
| 13 | GO:0008274: gamma-tubulin ring complex | 1.81E-04 |
| 14 | GO:0042651: thylakoid membrane | 2.44E-04 |
| 15 | GO:0009573: chloroplast ribulose bisphosphate carboxylase complex | 3.05E-04 |
| 16 | GO:0009706: chloroplast inner membrane | 3.30E-04 |
| 17 | GO:0000923: equatorial microtubule organizing center | 4.41E-04 |
| 18 | GO:0009523: photosystem II | 5.10E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 5.10E-04 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 9.07E-04 |
| 21 | GO:0009538: photosystem I reaction center | 1.46E-03 |
| 22 | GO:0031977: thylakoid lumen | 1.48E-03 |
| 23 | GO:0009539: photosystem II reaction center | 1.66E-03 |
| 24 | GO:0000922: spindle pole | 1.87E-03 |
| 25 | GO:0016324: apical plasma membrane | 2.32E-03 |
| 26 | GO:0010287: plastoglobule | 3.59E-03 |
| 27 | GO:0005875: microtubule associated complex | 3.86E-03 |
| 28 | GO:0010319: stromule | 9.17E-03 |
| 29 | GO:0031969: chloroplast membrane | 1.00E-02 |
| 30 | GO:0016020: membrane | 1.03E-02 |
| 31 | GO:0005840: ribosome | 1.30E-02 |
| 32 | GO:0009505: plant-type cell wall | 1.63E-02 |
| 33 | GO:0005623: cell | 3.22E-02 |
| 34 | GO:0031225: anchored component of membrane | 4.09E-02 |
| 35 | GO:0046658: anchored component of plasma membrane | 4.85E-02 |