GO Enrichment Analysis of Co-expressed Genes with
AT5G40950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098586: cellular response to virus | 0.00E+00 |
| 2 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 3 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 4 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 5 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 6 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 7 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 8 | GO:0019253: reductive pentose-phosphate cycle | 2.62E-08 |
| 9 | GO:0090391: granum assembly | 1.27E-06 |
| 10 | GO:0015979: photosynthesis | 1.47E-06 |
| 11 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.03E-06 |
| 12 | GO:0048564: photosystem I assembly | 3.81E-05 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 5.85E-05 |
| 14 | GO:0018298: protein-chromophore linkage | 6.84E-05 |
| 15 | GO:0071277: cellular response to calcium ion | 7.75E-05 |
| 16 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.75E-05 |
| 17 | GO:1904966: positive regulation of vitamin E biosynthetic process | 7.75E-05 |
| 18 | GO:1904964: positive regulation of phytol biosynthetic process | 7.75E-05 |
| 19 | GO:0042371: vitamin K biosynthetic process | 7.75E-05 |
| 20 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.04E-04 |
| 21 | GO:0009735: response to cytokinin | 1.29E-04 |
| 22 | GO:0006006: glucose metabolic process | 1.40E-04 |
| 23 | GO:0009658: chloroplast organization | 1.48E-04 |
| 24 | GO:0010207: photosystem II assembly | 1.60E-04 |
| 25 | GO:0046741: transport of virus in host, tissue to tissue | 1.85E-04 |
| 26 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.85E-04 |
| 27 | GO:0080005: photosystem stoichiometry adjustment | 1.85E-04 |
| 28 | GO:0000256: allantoin catabolic process | 1.85E-04 |
| 29 | GO:0080183: response to photooxidative stress | 1.85E-04 |
| 30 | GO:0006013: mannose metabolic process | 3.11E-04 |
| 31 | GO:0010136: ureide catabolic process | 3.11E-04 |
| 32 | GO:0006145: purine nucleobase catabolic process | 4.49E-04 |
| 33 | GO:0043572: plastid fission | 4.49E-04 |
| 34 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 4.49E-04 |
| 35 | GO:0043097: pyrimidine nucleoside salvage | 7.57E-04 |
| 36 | GO:0010236: plastoquinone biosynthetic process | 7.57E-04 |
| 37 | GO:0006206: pyrimidine nucleobase metabolic process | 9.24E-04 |
| 38 | GO:0009643: photosynthetic acclimation | 9.24E-04 |
| 39 | GO:0050665: hydrogen peroxide biosynthetic process | 9.24E-04 |
| 40 | GO:0042549: photosystem II stabilization | 9.24E-04 |
| 41 | GO:0055114: oxidation-reduction process | 9.39E-04 |
| 42 | GO:0010189: vitamin E biosynthetic process | 1.10E-03 |
| 43 | GO:0009854: oxidative photosynthetic carbon pathway | 1.10E-03 |
| 44 | GO:0015977: carbon fixation | 1.10E-03 |
| 45 | GO:0010218: response to far red light | 1.13E-03 |
| 46 | GO:0010196: nonphotochemical quenching | 1.29E-03 |
| 47 | GO:0009637: response to blue light | 1.29E-03 |
| 48 | GO:0048528: post-embryonic root development | 1.29E-03 |
| 49 | GO:0009772: photosynthetic electron transport in photosystem II | 1.29E-03 |
| 50 | GO:0009853: photorespiration | 1.29E-03 |
| 51 | GO:0009642: response to light intensity | 1.48E-03 |
| 52 | GO:0009704: de-etiolation | 1.48E-03 |
| 53 | GO:0080167: response to karrikin | 1.54E-03 |
| 54 | GO:0010114: response to red light | 1.65E-03 |
| 55 | GO:0032544: plastid translation | 1.69E-03 |
| 56 | GO:0009245: lipid A biosynthetic process | 1.91E-03 |
| 57 | GO:0090333: regulation of stomatal closure | 1.91E-03 |
| 58 | GO:0000373: Group II intron splicing | 1.91E-03 |
| 59 | GO:0009098: leucine biosynthetic process | 2.14E-03 |
| 60 | GO:0045036: protein targeting to chloroplast | 2.37E-03 |
| 61 | GO:0006096: glycolytic process | 2.60E-03 |
| 62 | GO:0009773: photosynthetic electron transport in photosystem I | 2.61E-03 |
| 63 | GO:0009767: photosynthetic electron transport chain | 3.12E-03 |
| 64 | GO:0010020: chloroplast fission | 3.38E-03 |
| 65 | GO:0007017: microtubule-based process | 4.52E-03 |
| 66 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.52E-03 |
| 67 | GO:0051302: regulation of cell division | 4.52E-03 |
| 68 | GO:0080092: regulation of pollen tube growth | 5.13E-03 |
| 69 | GO:0009416: response to light stimulus | 5.19E-03 |
| 70 | GO:0009306: protein secretion | 5.77E-03 |
| 71 | GO:0042335: cuticle development | 6.44E-03 |
| 72 | GO:0015986: ATP synthesis coupled proton transport | 7.13E-03 |
| 73 | GO:0009791: post-embryonic development | 7.49E-03 |
| 74 | GO:0010193: response to ozone | 7.85E-03 |
| 75 | GO:0000302: response to reactive oxygen species | 7.85E-03 |
| 76 | GO:0019761: glucosinolate biosynthetic process | 8.22E-03 |
| 77 | GO:0010286: heat acclimation | 9.36E-03 |
| 78 | GO:0010027: thylakoid membrane organization | 1.02E-02 |
| 79 | GO:0009816: defense response to bacterium, incompatible interaction | 1.06E-02 |
| 80 | GO:0009627: systemic acquired resistance | 1.10E-02 |
| 81 | GO:0042128: nitrate assimilation | 1.10E-02 |
| 82 | GO:0009817: defense response to fungus, incompatible interaction | 1.22E-02 |
| 83 | GO:0042742: defense response to bacterium | 1.27E-02 |
| 84 | GO:0007568: aging | 1.36E-02 |
| 85 | GO:0032259: methylation | 1.46E-02 |
| 86 | GO:0009744: response to sucrose | 1.73E-02 |
| 87 | GO:0009644: response to high light intensity | 1.83E-02 |
| 88 | GO:0009409: response to cold | 1.87E-02 |
| 89 | GO:0042538: hyperosmotic salinity response | 2.04E-02 |
| 90 | GO:0010224: response to UV-B | 2.19E-02 |
| 91 | GO:0009058: biosynthetic process | 3.35E-02 |
| 92 | GO:0055085: transmembrane transport | 3.44E-02 |
| 93 | GO:0006633: fatty acid biosynthetic process | 3.80E-02 |
| 94 | GO:0007623: circadian rhythm | 4.06E-02 |
| 95 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.19E-02 |
| 96 | GO:0010468: regulation of gene expression | 4.60E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 4 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 5 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 6 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 7 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 8 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 9 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 10 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 11 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.31E-07 |
| 12 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 5.79E-06 |
| 13 | GO:0016168: chlorophyll binding | 4.94E-05 |
| 14 | GO:0030941: chloroplast targeting sequence binding | 7.75E-05 |
| 15 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 7.75E-05 |
| 16 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 1.85E-04 |
| 17 | GO:0070402: NADPH binding | 3.11E-04 |
| 18 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.11E-04 |
| 19 | GO:0022891: substrate-specific transmembrane transporter activity | 3.33E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 4.49E-04 |
| 21 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 4.49E-04 |
| 22 | GO:0016984: ribulose-bisphosphate carboxylase activity | 4.49E-04 |
| 23 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 4.49E-04 |
| 24 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 4.49E-04 |
| 25 | GO:0048038: quinone binding | 5.60E-04 |
| 26 | GO:0043495: protein anchor | 5.98E-04 |
| 27 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 5.98E-04 |
| 28 | GO:0008891: glycolate oxidase activity | 5.98E-04 |
| 29 | GO:0051861: glycolipid binding | 5.98E-04 |
| 30 | GO:0008453: alanine-glyoxylate transaminase activity | 5.98E-04 |
| 31 | GO:0031177: phosphopantetheine binding | 9.24E-04 |
| 32 | GO:0004849: uridine kinase activity | 1.10E-03 |
| 33 | GO:0000035: acyl binding | 1.10E-03 |
| 34 | GO:0004559: alpha-mannosidase activity | 1.10E-03 |
| 35 | GO:0019899: enzyme binding | 1.29E-03 |
| 36 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.48E-03 |
| 37 | GO:0004033: aldo-keto reductase (NADP) activity | 1.48E-03 |
| 38 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.78E-03 |
| 39 | GO:0051287: NAD binding | 1.99E-03 |
| 40 | GO:0045309: protein phosphorylated amino acid binding | 2.14E-03 |
| 41 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.61E-03 |
| 42 | GO:0019904: protein domain specific binding | 2.61E-03 |
| 43 | GO:0019843: rRNA binding | 3.90E-03 |
| 44 | GO:0031409: pigment binding | 3.94E-03 |
| 45 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 6.78E-03 |
| 46 | GO:0010181: FMN binding | 7.13E-03 |
| 47 | GO:0016853: isomerase activity | 7.13E-03 |
| 48 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.18E-02 |
| 49 | GO:0003746: translation elongation factor activity | 1.45E-02 |
| 50 | GO:0050661: NADP binding | 1.59E-02 |
| 51 | GO:0009055: electron carrier activity | 1.64E-02 |
| 52 | GO:0003777: microtubule motor activity | 2.30E-02 |
| 53 | GO:0016829: lyase activity | 3.42E-02 |
| 54 | GO:0008565: protein transporter activity | 3.67E-02 |
| 55 | GO:0042802: identical protein binding | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.35E-39 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 3.69E-31 |
| 3 | GO:0009941: chloroplast envelope | 1.10E-22 |
| 4 | GO:0009570: chloroplast stroma | 9.85E-15 |
| 5 | GO:0009579: thylakoid | 1.52E-14 |
| 6 | GO:0009534: chloroplast thylakoid | 3.23E-10 |
| 7 | GO:0009523: photosystem II | 4.19E-07 |
| 8 | GO:0009706: chloroplast inner membrane | 2.35E-05 |
| 9 | GO:0010319: stromule | 3.77E-05 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 6.04E-05 |
| 11 | GO:0009515: granal stacked thylakoid | 7.75E-05 |
| 12 | GO:0030095: chloroplast photosystem II | 1.60E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 2.52E-04 |
| 14 | GO:0009573: chloroplast ribulose bisphosphate carboxylase complex | 3.11E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 3.11E-04 |
| 16 | GO:0033281: TAT protein transport complex | 3.11E-04 |
| 17 | GO:0048046: apoplast | 3.96E-04 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 4.59E-04 |
| 19 | GO:0030286: dynein complex | 5.98E-04 |
| 20 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 9.24E-04 |
| 21 | GO:0009707: chloroplast outer membrane | 1.03E-03 |
| 22 | GO:0031359: integral component of chloroplast outer membrane | 1.29E-03 |
| 23 | GO:0031977: thylakoid lumen | 1.52E-03 |
| 24 | GO:0031969: chloroplast membrane | 1.54E-03 |
| 25 | GO:0009539: photosystem II reaction center | 1.69E-03 |
| 26 | GO:0016324: apical plasma membrane | 2.37E-03 |
| 27 | GO:0010287: plastoglobule | 3.70E-03 |
| 28 | GO:0009536: plastid | 3.77E-03 |
| 29 | GO:0005875: microtubule associated complex | 3.94E-03 |
| 30 | GO:0042651: thylakoid membrane | 4.52E-03 |
| 31 | GO:0005777: peroxisome | 6.19E-03 |
| 32 | GO:0009522: photosystem I | 7.13E-03 |
| 33 | GO:0019898: extrinsic component of membrane | 7.49E-03 |
| 34 | GO:0005778: peroxisomal membrane | 9.36E-03 |
| 35 | GO:0016020: membrane | 1.11E-02 |
| 36 | GO:0005840: ribosome | 1.35E-02 |
| 37 | GO:0015934: large ribosomal subunit | 1.36E-02 |