GO Enrichment Analysis of Co-expressed Genes with
AT5G40770
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 2 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 3 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 4 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 5 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 6 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 7 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 9 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 10 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 11 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 12 | GO:0006364: rRNA processing | 4.14E-16 |
| 13 | GO:0006412: translation | 4.64E-07 |
| 14 | GO:0045039: protein import into mitochondrial inner membrane | 9.47E-06 |
| 15 | GO:0009553: embryo sac development | 3.83E-05 |
| 16 | GO:0042273: ribosomal large subunit biogenesis | 3.91E-05 |
| 17 | GO:0042254: ribosome biogenesis | 4.67E-05 |
| 18 | GO:0030150: protein import into mitochondrial matrix | 6.57E-05 |
| 19 | GO:0006458: 'de novo' protein folding | 1.27E-04 |
| 20 | GO:0010501: RNA secondary structure unwinding | 1.65E-04 |
| 21 | GO:0006169: adenosine salvage | 2.36E-04 |
| 22 | GO:0002143: tRNA wobble position uridine thiolation | 2.36E-04 |
| 23 | GO:0031120: snRNA pseudouridine synthesis | 2.36E-04 |
| 24 | GO:0031118: rRNA pseudouridine synthesis | 2.36E-04 |
| 25 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 2.36E-04 |
| 26 | GO:0000494: box C/D snoRNA 3'-end processing | 2.36E-04 |
| 27 | GO:2000232: regulation of rRNA processing | 2.36E-04 |
| 28 | GO:0043985: histone H4-R3 methylation | 2.36E-04 |
| 29 | GO:1990258: histone glutamine methylation | 2.36E-04 |
| 30 | GO:0010162: seed dormancy process | 4.42E-04 |
| 31 | GO:0008535: respiratory chain complex IV assembly | 5.24E-04 |
| 32 | GO:0080009: mRNA methylation | 5.24E-04 |
| 33 | GO:0045041: protein import into mitochondrial intermembrane space | 5.24E-04 |
| 34 | GO:0034470: ncRNA processing | 5.24E-04 |
| 35 | GO:0009735: response to cytokinin | 5.40E-04 |
| 36 | GO:0006626: protein targeting to mitochondrion | 6.63E-04 |
| 37 | GO:0006413: translational initiation | 7.78E-04 |
| 38 | GO:0070475: rRNA base methylation | 8.52E-04 |
| 39 | GO:0006556: S-adenosylmethionine biosynthetic process | 8.52E-04 |
| 40 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.02E-03 |
| 41 | GO:0000027: ribosomal large subunit assembly | 1.02E-03 |
| 42 | GO:0051302: regulation of cell division | 1.12E-03 |
| 43 | GO:0032981: mitochondrial respiratory chain complex I assembly | 1.21E-03 |
| 44 | GO:0006986: response to unfolded protein | 1.21E-03 |
| 45 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.21E-03 |
| 46 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 1.21E-03 |
| 47 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.21E-03 |
| 48 | GO:0007276: gamete generation | 1.21E-03 |
| 49 | GO:0009855: determination of bilateral symmetry | 1.21E-03 |
| 50 | GO:0051131: chaperone-mediated protein complex assembly | 1.21E-03 |
| 51 | GO:0061077: chaperone-mediated protein folding | 1.23E-03 |
| 52 | GO:0007005: mitochondrion organization | 1.35E-03 |
| 53 | GO:0009294: DNA mediated transformation | 1.47E-03 |
| 54 | GO:0009561: megagametogenesis | 1.59E-03 |
| 55 | GO:0000460: maturation of 5.8S rRNA | 1.62E-03 |
| 56 | GO:1900864: mitochondrial RNA modification | 1.62E-03 |
| 57 | GO:0046345: abscisic acid catabolic process | 1.62E-03 |
| 58 | GO:0042274: ribosomal small subunit biogenesis | 1.62E-03 |
| 59 | GO:0051205: protein insertion into membrane | 1.62E-03 |
| 60 | GO:0008033: tRNA processing | 1.86E-03 |
| 61 | GO:0046686: response to cadmium ion | 1.96E-03 |
| 62 | GO:0006461: protein complex assembly | 2.07E-03 |
| 63 | GO:0044209: AMP salvage | 2.07E-03 |
| 64 | GO:0000380: alternative mRNA splicing, via spliceosome | 2.07E-03 |
| 65 | GO:0010375: stomatal complex patterning | 2.07E-03 |
| 66 | GO:0031167: rRNA methylation | 2.07E-03 |
| 67 | GO:0006396: RNA processing | 2.47E-03 |
| 68 | GO:0006777: Mo-molybdopterin cofactor biosynthetic process | 2.55E-03 |
| 69 | GO:0000470: maturation of LSU-rRNA | 2.55E-03 |
| 70 | GO:0016554: cytidine to uridine editing | 2.55E-03 |
| 71 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.06E-03 |
| 72 | GO:0042026: protein refolding | 3.06E-03 |
| 73 | GO:0006400: tRNA modification | 3.61E-03 |
| 74 | GO:0010374: stomatal complex development | 3.61E-03 |
| 75 | GO:0080186: developmental vegetative growth | 3.61E-03 |
| 76 | GO:0032259: methylation | 3.92E-03 |
| 77 | GO:0006457: protein folding | 4.06E-03 |
| 78 | GO:0001558: regulation of cell growth | 4.79E-03 |
| 79 | GO:0006002: fructose 6-phosphate metabolic process | 4.79E-03 |
| 80 | GO:0001510: RNA methylation | 4.79E-03 |
| 81 | GO:0009451: RNA modification | 4.90E-03 |
| 82 | GO:0006189: 'de novo' IMP biosynthetic process | 5.43E-03 |
| 83 | GO:0000387: spliceosomal snRNP assembly | 6.09E-03 |
| 84 | GO:1900865: chloroplast RNA modification | 6.09E-03 |
| 85 | GO:0006259: DNA metabolic process | 6.78E-03 |
| 86 | GO:0010582: floral meristem determinacy | 8.25E-03 |
| 87 | GO:0006108: malate metabolic process | 9.02E-03 |
| 88 | GO:0090351: seedling development | 1.06E-02 |
| 89 | GO:0010030: positive regulation of seed germination | 1.06E-02 |
| 90 | GO:0006406: mRNA export from nucleus | 1.24E-02 |
| 91 | GO:0009793: embryo development ending in seed dormancy | 1.34E-02 |
| 92 | GO:0016569: covalent chromatin modification | 1.37E-02 |
| 93 | GO:0006730: one-carbon metabolic process | 1.51E-02 |
| 94 | GO:0009693: ethylene biosynthetic process | 1.61E-02 |
| 95 | GO:0000398: mRNA splicing, via spliceosome | 1.69E-02 |
| 96 | GO:0070417: cellular response to cold | 1.80E-02 |
| 97 | GO:0006414: translational elongation | 1.83E-02 |
| 98 | GO:0000413: protein peptidyl-prolyl isomerization | 1.91E-02 |
| 99 | GO:0010197: polar nucleus fusion | 2.01E-02 |
| 100 | GO:0009960: endosperm development | 2.01E-02 |
| 101 | GO:0080156: mitochondrial mRNA modification | 2.34E-02 |
| 102 | GO:0016032: viral process | 2.45E-02 |
| 103 | GO:0071281: cellular response to iron ion | 2.56E-02 |
| 104 | GO:0010468: regulation of gene expression | 3.02E-02 |
| 105 | GO:0006974: cellular response to DNA damage stimulus | 3.29E-02 |
| 106 | GO:0009631: cold acclimation | 4.07E-02 |
| 107 | GO:0006099: tricarboxylic acid cycle | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 2 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 3 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 4 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 5 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 6 | GO:0061604: molybdopterin-synthase sulfurtransferase activity | 0.00E+00 |
| 7 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 8 | GO:0061605: molybdopterin-synthase adenylyltransferase activity | 0.00E+00 |
| 9 | GO:0003723: RNA binding | 4.37E-19 |
| 10 | GO:0003735: structural constituent of ribosome | 6.63E-11 |
| 11 | GO:0000166: nucleotide binding | 1.60E-09 |
| 12 | GO:0008026: ATP-dependent helicase activity | 1.67E-07 |
| 13 | GO:0043021: ribonucleoprotein complex binding | 2.61E-06 |
| 14 | GO:0030515: snoRNA binding | 2.86E-06 |
| 15 | GO:0003746: translation elongation factor activity | 4.45E-06 |
| 16 | GO:0044183: protein binding involved in protein folding | 2.04E-05 |
| 17 | GO:0004004: ATP-dependent RNA helicase activity | 4.10E-05 |
| 18 | GO:0004407: histone deacetylase activity | 6.57E-05 |
| 19 | GO:0005524: ATP binding | 1.86E-04 |
| 20 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.09E-04 |
| 21 | GO:0008746: NAD(P)+ transhydrogenase activity | 2.36E-04 |
| 22 | GO:1990259: histone-glutamine methyltransferase activity | 2.36E-04 |
| 23 | GO:0042134: rRNA primary transcript binding | 2.36E-04 |
| 24 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 2.36E-04 |
| 25 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.36E-04 |
| 26 | GO:0004001: adenosine kinase activity | 2.36E-04 |
| 27 | GO:0008173: RNA methyltransferase activity | 2.63E-04 |
| 28 | GO:0008135: translation factor activity, RNA binding | 2.63E-04 |
| 29 | GO:0051082: unfolded protein binding | 3.73E-04 |
| 30 | GO:0001055: RNA polymerase II activity | 3.78E-04 |
| 31 | GO:0001054: RNA polymerase I activity | 5.11E-04 |
| 32 | GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity | 5.24E-04 |
| 33 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 5.24E-04 |
| 34 | GO:0019843: rRNA binding | 5.30E-04 |
| 35 | GO:0001056: RNA polymerase III activity | 5.84E-04 |
| 36 | GO:0009982: pseudouridine synthase activity | 6.63E-04 |
| 37 | GO:0050897: cobalt ion binding | 6.81E-04 |
| 38 | GO:0008649: rRNA methyltransferase activity | 8.52E-04 |
| 39 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 8.52E-04 |
| 40 | GO:0004478: methionine adenosyltransferase activity | 8.52E-04 |
| 41 | GO:0008265: Mo-molybdopterin cofactor sulfurase activity | 8.52E-04 |
| 42 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 8.52E-04 |
| 43 | GO:0070181: small ribosomal subunit rRNA binding | 8.52E-04 |
| 44 | GO:0003743: translation initiation factor activity | 1.09E-03 |
| 45 | GO:0051087: chaperone binding | 1.12E-03 |
| 46 | GO:0004792: thiosulfate sulfurtransferase activity | 1.21E-03 |
| 47 | GO:0008168: methyltransferase activity | 1.57E-03 |
| 48 | GO:0046527: glucosyltransferase activity | 1.62E-03 |
| 49 | GO:0003729: mRNA binding | 1.77E-03 |
| 50 | GO:0008641: small protein activating enzyme activity | 2.07E-03 |
| 51 | GO:0016615: malate dehydrogenase activity | 2.55E-03 |
| 52 | GO:0030060: L-malate dehydrogenase activity | 3.06E-03 |
| 53 | GO:0008235: metalloexopeptidase activity | 3.61E-03 |
| 54 | GO:0003872: 6-phosphofructokinase activity | 3.61E-03 |
| 55 | GO:0003924: GTPase activity | 4.19E-03 |
| 56 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 4.41E-03 |
| 57 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 4.64E-03 |
| 58 | GO:0005507: copper ion binding | 4.80E-03 |
| 59 | GO:0003678: DNA helicase activity | 5.43E-03 |
| 60 | GO:0005525: GTP binding | 6.17E-03 |
| 61 | GO:0016887: ATPase activity | 8.15E-03 |
| 62 | GO:0000049: tRNA binding | 8.25E-03 |
| 63 | GO:0003725: double-stranded RNA binding | 9.02E-03 |
| 64 | GO:0004176: ATP-dependent peptidase activity | 1.42E-02 |
| 65 | GO:0004519: endonuclease activity | 1.99E-02 |
| 66 | GO:0004527: exonuclease activity | 2.01E-02 |
| 67 | GO:0003713: transcription coactivator activity | 2.01E-02 |
| 68 | GO:0008080: N-acetyltransferase activity | 2.01E-02 |
| 69 | GO:0010181: FMN binding | 2.12E-02 |
| 70 | GO:0004721: phosphoprotein phosphatase activity | 3.41E-02 |
| 71 | GO:0008236: serine-type peptidase activity | 3.54E-02 |
| 72 | GO:0003697: single-stranded DNA binding | 4.34E-02 |
| 73 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.48E-02 |
| 74 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.76E-02 |
| 75 | GO:0005515: protein binding | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0070545: PeBoW complex | 0.00E+00 |
| 5 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 6 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 7 | GO:0005730: nucleolus | 1.95E-38 |
| 8 | GO:0032040: small-subunit processome | 4.72E-11 |
| 9 | GO:0005840: ribosome | 1.03E-08 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.15E-07 |
| 11 | GO:0022626: cytosolic ribosome | 2.19E-06 |
| 12 | GO:0022627: cytosolic small ribosomal subunit | 2.46E-06 |
| 13 | GO:0030687: preribosome, large subunit precursor | 2.86E-06 |
| 14 | GO:0005759: mitochondrial matrix | 1.05E-05 |
| 15 | GO:0005829: cytosol | 1.66E-05 |
| 16 | GO:0005834: heterotrimeric G-protein complex | 3.10E-05 |
| 17 | GO:0005634: nucleus | 6.63E-05 |
| 18 | GO:0005618: cell wall | 6.67E-05 |
| 19 | GO:0022625: cytosolic large ribosomal subunit | 8.67E-05 |
| 20 | GO:0031428: box C/D snoRNP complex | 9.17E-05 |
| 21 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.31E-04 |
| 22 | GO:0005743: mitochondrial inner membrane | 1.63E-04 |
| 23 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 2.36E-04 |
| 24 | GO:0005737: cytoplasm | 2.73E-04 |
| 25 | GO:0005736: DNA-directed RNA polymerase I complex | 3.18E-04 |
| 26 | GO:0005666: DNA-directed RNA polymerase III complex | 3.78E-04 |
| 27 | GO:0015030: Cajal body | 3.78E-04 |
| 28 | GO:0005739: mitochondrion | 4.41E-04 |
| 29 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.42E-04 |
| 30 | GO:0005665: DNA-directed RNA polymerase II, core complex | 5.84E-04 |
| 31 | GO:0000419: DNA-directed RNA polymerase V complex | 9.25E-04 |
| 32 | GO:0031429: box H/ACA snoRNP complex | 1.21E-03 |
| 33 | GO:0015935: small ribosomal subunit | 1.23E-03 |
| 34 | GO:0000178: exosome (RNase complex) | 2.07E-03 |
| 35 | GO:0005654: nucleoplasm | 3.06E-03 |
| 36 | GO:0016363: nuclear matrix | 3.06E-03 |
| 37 | GO:0030529: intracellular ribonucleoprotein complex | 3.56E-03 |
| 38 | GO:0005774: vacuolar membrane | 4.04E-03 |
| 39 | GO:0034399: nuclear periphery | 4.19E-03 |
| 40 | GO:0015934: large ribosomal subunit | 5.36E-03 |
| 41 | GO:0005763: mitochondrial small ribosomal subunit | 5.43E-03 |
| 42 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.50E-03 |
| 43 | GO:0009506: plasmodesma | 8.59E-03 |
| 44 | GO:0019013: viral nucleocapsid | 9.02E-03 |
| 45 | GO:0005681: spliceosomal complex | 1.21E-02 |
| 46 | GO:0005758: mitochondrial intermembrane space | 1.24E-02 |
| 47 | GO:0005747: mitochondrial respiratory chain complex I | 1.25E-02 |
| 48 | GO:0009532: plastid stroma | 1.42E-02 |
| 49 | GO:0016592: mediator complex | 2.45E-02 |
| 50 | GO:0010319: stromule | 2.80E-02 |
| 51 | GO:0009536: plastid | 3.87E-02 |