co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G40580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
2	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
3	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
4	GO:0030970: retrograde protein transport, ER to cytosol	0.00E+00
5	GO:0001789: G-protein coupled receptor signaling pathway, coupled to S1P second messenger	0.00E+00
6	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
7	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
8	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
9	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
10	GO:0006511: ubiquitin-dependent protein catabolic process	2.13E-44
11	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.57E-12
12	GO:0030163: protein catabolic process	2.51E-11
13	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.09E-09
14	GO:0051603: proteolysis involved in cellular protein catabolic process	4.10E-09
15	GO:0030433: ubiquitin-dependent ERAD pathway	1.24E-08
16	GO:0043248: proteasome assembly	3.16E-07
17	GO:0042176: regulation of protein catabolic process	3.16E-07
18	GO:0051788: response to misfolded protein	1.11E-06
19	GO:0046686: response to cadmium ion	1.04E-04
20	GO:0035266: meristem growth	1.50E-04
21	GO:0007292: female gamete generation	1.50E-04
22	GO:0006434: seryl-tRNA aminoacylation	1.50E-04
23	GO:0003400: regulation of COPII vesicle coating	1.50E-04
24	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.50E-04
25	GO:0010265: SCF complex assembly	1.50E-04
26	GO:0010043: response to zinc ion	2.99E-04
27	GO:0045087: innate immune response	3.38E-04
28	GO:0006212: uracil catabolic process	3.42E-04
29	GO:0019483: beta-alanine biosynthetic process	3.42E-04
30	GO:0015786: UDP-glucose transport	3.42E-04
31	GO:0043132: NAD transport	3.42E-04
32	GO:0009156: ribonucleoside monophosphate biosynthetic process	3.42E-04
33	GO:0006631: fatty acid metabolic process	4.23E-04
34	GO:0009965: leaf morphogenesis	5.44E-04
35	GO:0015783: GDP-fucose transport	5.61E-04
36	GO:0060968: regulation of gene silencing	5.61E-04
37	GO:0010498: proteasomal protein catabolic process	5.61E-04
38	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	5.61E-04
39	GO:0044375: regulation of peroxisome size	5.61E-04
40	GO:0006012: galactose metabolic process	7.93E-04
41	GO:0006571: tyrosine biosynthetic process	8.03E-04
42	GO:0072334: UDP-galactose transmembrane transport	8.03E-04
43	GO:0015858: nucleoside transport	8.03E-04
44	GO:0009647: skotomorphogenesis	8.03E-04
45	GO:0010255: glucose mediated signaling pathway	8.03E-04
46	GO:0001676: long-chain fatty acid metabolic process	8.03E-04
47	GO:0046836: glycolipid transport	8.03E-04
48	GO:0045227: capsule polysaccharide biosynthetic process	1.06E-03
49	GO:0033358: UDP-L-arabinose biosynthetic process	1.06E-03
50	GO:0010363: regulation of plant-type hypersensitive response	1.06E-03
51	GO:0009165: nucleotide biosynthetic process	1.06E-03
52	GO:1902183: regulation of shoot apical meristem development	1.35E-03
53	GO:0036065: fucosylation	1.35E-03
54	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.35E-03
55	GO:0048827: phyllome development	1.65E-03
56	GO:0048232: male gamete generation	1.65E-03
57	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.98E-03
58	GO:0009094: L-phenylalanine biosynthetic process	1.98E-03
59	GO:0009554: megasporogenesis	1.98E-03
60	GO:0032880: regulation of protein localization	2.33E-03
61	GO:0048528: post-embryonic root development	2.33E-03
62	GO:0006744: ubiquinone biosynthetic process	2.33E-03
63	GO:0016559: peroxisome fission	2.70E-03
64	GO:0006644: phospholipid metabolic process	2.70E-03
65	GO:0006499: N-terminal protein myristoylation	2.70E-03
66	GO:0010078: maintenance of root meristem identity	2.70E-03
67	GO:0031540: regulation of anthocyanin biosynthetic process	2.70E-03
68	GO:0022900: electron transport chain	3.08E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	3.08E-03
70	GO:0043562: cellular response to nitrogen levels	3.08E-03
71	GO:0015780: nucleotide-sugar transport	3.49E-03
72	GO:0098656: anion transmembrane transport	3.49E-03
73	GO:0046685: response to arsenic-containing substance	3.49E-03
74	GO:0009245: lipid A biosynthetic process	3.49E-03
75	GO:0010449: root meristem growth	3.91E-03
76	GO:0008643: carbohydrate transport	4.30E-03
77	GO:0048829: root cap development	4.35E-03
78	GO:0010015: root morphogenesis	4.80E-03
79	GO:0072593: reactive oxygen species metabolic process	4.80E-03
80	GO:0048229: gametophyte development	4.80E-03
81	GO:0071365: cellular response to auxin stimulus	5.27E-03
82	GO:0006820: anion transport	5.27E-03
83	GO:0010102: lateral root morphogenesis	5.75E-03
84	GO:0009785: blue light signaling pathway	5.75E-03
85	GO:0006807: nitrogen compound metabolic process	5.75E-03
86	GO:0009933: meristem structural organization	6.25E-03
87	GO:0009969: xyloglucan biosynthetic process	6.77E-03
88	GO:0007031: peroxisome organization	6.77E-03
89	GO:0090351: seedling development	6.77E-03
90	GO:0009553: embryo sac development	7.39E-03
91	GO:0006487: protein N-linked glycosylation	7.84E-03
92	GO:0009116: nucleoside metabolic process	7.84E-03
93	GO:0006406: mRNA export from nucleus	7.84E-03
94	GO:0051726: regulation of cell cycle	8.07E-03
95	GO:0048364: root development	8.30E-03
96	GO:0008299: isoprenoid biosynthetic process	8.40E-03
97	GO:0061077: chaperone-mediated protein folding	8.97E-03
98	GO:0015992: proton transport	8.97E-03
99	GO:0071215: cellular response to abscisic acid stimulus	1.02E-02
100	GO:0010584: pollen exine formation	1.08E-02
101	GO:0042127: regulation of cell proliferation	1.08E-02
102	GO:0009306: protein secretion	1.08E-02
103	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.14E-02
104	GO:0015991: ATP hydrolysis coupled proton transport	1.20E-02
105	GO:0000413: protein peptidyl-prolyl isomerization	1.20E-02
106	GO:0010051: xylem and phloem pattern formation	1.20E-02
107	GO:0008360: regulation of cell shape	1.27E-02
108	GO:0006662: glycerol ether metabolic process	1.27E-02
109	GO:0048825: cotyledon development	1.41E-02
110	GO:0009749: response to glucose	1.41E-02
111	GO:0008654: phospholipid biosynthetic process	1.41E-02
112	GO:0009556: microsporogenesis	1.41E-02
113	GO:0010193: response to ozone	1.47E-02
114	GO:0009630: gravitropism	1.55E-02
115	GO:0016579: protein deubiquitination	1.84E-02
116	GO:0010027: thylakoid membrane organization	1.92E-02
117	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.99E-02
118	GO:0006888: ER to Golgi vesicle-mediated transport	2.15E-02
119	GO:0016049: cell growth	2.23E-02
120	GO:0006457: protein folding	2.26E-02
121	GO:0009817: defense response to fungus, incompatible interaction	2.31E-02
122	GO:0008219: cell death	2.31E-02
123	GO:0010311: lateral root formation	2.40E-02
124	GO:0009832: plant-type cell wall biogenesis	2.40E-02
125	GO:0009910: negative regulation of flower development	2.56E-02
126	GO:0009631: cold acclimation	2.56E-02
127	GO:0010119: regulation of stomatal movement	2.56E-02
128	GO:0000724: double-strand break repair via homologous recombination	2.65E-02
129	GO:0009853: photorespiration	2.74E-02
130	GO:0034599: cellular response to oxidative stress	2.83E-02
131	GO:0007275: multicellular organism development	2.98E-02
132	GO:0006839: mitochondrial transport	3.00E-02
133	GO:0008283: cell proliferation	3.28E-02
134	GO:0000209: protein polyubiquitination	3.37E-02
135	GO:0009408: response to heat	3.74E-02
136	GO:0009793: embryo development ending in seed dormancy	3.78E-02
137	GO:0006812: cation transport	3.85E-02
138	GO:0009809: lignin biosynthetic process	4.05E-02
139	GO:0006486: protein glycosylation	4.05E-02
140	GO:0009736: cytokinin-activated signaling pathway	4.05E-02
141	GO:0009909: regulation of flower development	4.36E-02
142	GO:0048367: shoot system development	4.67E-02
143	GO:0009740: gibberellic acid mediated signaling pathway	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
3	GO:0003837: beta-ureidopropionase activity	0.00E+00
4	GO:0048244: phytanoyl-CoA dioxygenase activity	0.00E+00
5	GO:0016247: channel regulator activity	0.00E+00
6	GO:0005095: GTPase inhibitor activity	0.00E+00
7	GO:0044610: FMN transmembrane transporter activity	0.00E+00
8	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0004298: threonine-type endopeptidase activity	6.35E-44
10	GO:0008233: peptidase activity	7.33E-27
11	GO:0036402: proteasome-activating ATPase activity	1.09E-09
12	GO:0017025: TBP-class protein binding	2.67E-07
13	GO:0030234: enzyme regulator activity	5.34E-06
14	GO:0051020: GTPase binding	6.14E-05
15	GO:0016887: ATPase activity	1.18E-04
16	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	1.50E-04
17	GO:0004828: serine-tRNA ligase activity	1.50E-04
18	GO:0050200: plasmalogen synthase activity	1.50E-04
19	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.50E-04
20	GO:0015230: FAD transmembrane transporter activity	1.50E-04
21	GO:0051724: NAD transporter activity	3.42E-04
22	GO:0050347: trans-octaprenyltranstransferase activity	3.42E-04
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	3.42E-04
24	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	3.42E-04
25	GO:0015228: coenzyme A transmembrane transporter activity	3.42E-04
26	GO:0004175: endopeptidase activity	4.00E-04
27	GO:0005457: GDP-fucose transmembrane transporter activity	5.61E-04
28	GO:0001664: G-protein coupled receptor binding	5.61E-04
29	GO:0008253: 5'-nucleotidase activity	5.61E-04
30	GO:0031683: G-protein beta/gamma-subunit complex binding	5.61E-04
31	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.71E-04
32	GO:0017089: glycolipid transporter activity	8.03E-04
33	GO:0004749: ribose phosphate diphosphokinase activity	8.03E-04
34	GO:0005460: UDP-glucose transmembrane transporter activity	8.03E-04
35	GO:0008514: organic anion transmembrane transporter activity	8.59E-04
36	GO:0051861: glycolipid binding	1.06E-03
37	GO:0015369: calcium:proton antiporter activity	1.06E-03
38	GO:0004659: prenyltransferase activity	1.06E-03
39	GO:0015368: calcium:cation antiporter activity	1.06E-03
40	GO:0050373: UDP-arabinose 4-epimerase activity	1.06E-03
41	GO:0005459: UDP-galactose transmembrane transporter activity	1.35E-03
42	GO:0080122: AMP transmembrane transporter activity	1.35E-03
43	GO:0031177: phosphopantetheine binding	1.65E-03
44	GO:0015217: ADP transmembrane transporter activity	1.98E-03
45	GO:0102391: decanoate--CoA ligase activity	1.98E-03
46	GO:0003978: UDP-glucose 4-epimerase activity	1.98E-03
47	GO:0000035: acyl binding	1.98E-03
48	GO:0004602: glutathione peroxidase activity	1.98E-03
49	GO:0005347: ATP transmembrane transporter activity	1.98E-03
50	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.33E-03
51	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.33E-03
52	GO:0008143: poly(A) binding	2.33E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	2.33E-03
54	GO:0015288: porin activity	2.70E-03
55	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.70E-03
56	GO:0004034: aldose 1-epimerase activity	2.70E-03
57	GO:0052747: sinapyl alcohol dehydrogenase activity	2.70E-03
58	GO:0015491: cation:cation antiporter activity	2.70E-03
59	GO:0050897: cobalt ion binding	2.82E-03
60	GO:0008308: voltage-gated anion channel activity	3.08E-03
61	GO:0008417: fucosyltransferase activity	3.49E-03
62	GO:0004161: dimethylallyltranstransferase activity	4.80E-03
63	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.80E-03
64	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.27E-03
65	GO:0031418: L-ascorbic acid binding	7.84E-03
66	GO:0043130: ubiquitin binding	7.84E-03
67	GO:0005528: FK506 binding	7.84E-03
68	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.97E-03
69	GO:0004540: ribonuclease activity	8.97E-03
70	GO:0047134: protein-disulfide reductase activity	1.14E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-02
72	GO:0016853: isomerase activity	1.34E-02
73	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.47E-02
74	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.47E-02
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
76	GO:0030246: carbohydrate binding	2.37E-02
77	GO:0005096: GTPase activator activity	2.40E-02
78	GO:0003993: acid phosphatase activity	2.83E-02
79	GO:0043621: protein self-association	3.47E-02
80	GO:0005198: structural molecule activity	3.56E-02
81	GO:0031625: ubiquitin protein ligase binding	4.36E-02
82	GO:0005515: protein binding	4.37E-02
83	GO:0022857: transmembrane transporter activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0019774: proteasome core complex, beta-subunit complex	0.00E+00
2	GO:0000502: proteasome complex	7.45E-76
3	GO:0005839: proteasome core complex	6.35E-44
4	GO:0019773: proteasome core complex, alpha-subunit complex	8.01E-25
5	GO:0008541: proteasome regulatory particle, lid subcomplex	5.21E-17
6	GO:0005829: cytosol	3.15E-14
7	GO:0031595: nuclear proteasome complex	3.73E-14
8	GO:0008540: proteasome regulatory particle, base subcomplex	1.04E-12
9	GO:0005774: vacuolar membrane	2.82E-10
10	GO:0031597: cytosolic proteasome complex	2.42E-09
11	GO:0005737: cytoplasm	3.43E-07
12	GO:0046861: glyoxysomal membrane	4.13E-06
13	GO:0005838: proteasome regulatory particle	4.13E-06
14	GO:0005783: endoplasmic reticulum	4.39E-05
15	GO:0009514: glyoxysome	1.33E-04
16	GO:0005779: integral component of peroxisomal membrane	1.33E-04
17	GO:0022626: cytosolic ribosome	1.46E-04
18	GO:0005773: vacuole	2.45E-04
19	GO:0033180: proton-transporting V-type ATPase, V1 domain	8.03E-04
20	GO:0005886: plasma membrane	1.51E-03
21	GO:0005778: peroxisomal membrane	1.68E-03
22	GO:0005788: endoplasmic reticulum lumen	1.99E-03
23	GO:0005634: nucleus	2.95E-03
24	GO:0046930: pore complex	3.08E-03
25	GO:0009506: plasmodesma	3.23E-03
26	GO:0005777: peroxisome	4.61E-03
27	GO:0005747: mitochondrial respiratory chain complex I	6.53E-03
28	GO:0030176: integral component of endoplasmic reticulum membrane	6.77E-03
29	GO:0005769: early endosome	7.30E-03
30	GO:0005794: Golgi apparatus	7.33E-03
31	GO:0070469: respiratory chain	8.40E-03
32	GO:0045271: respiratory chain complex I	8.40E-03
33	GO:0005741: mitochondrial outer membrane	8.97E-03
34	GO:0009705: plant-type vacuole membrane	1.32E-02
35	GO:0016592: mediator complex	1.55E-02
36	GO:0032580: Golgi cisterna membrane	1.69E-02
37	GO:0015934: large ribosomal subunit	2.56E-02
38	GO:0000325: plant-type vacuole	2.56E-02
39	GO:0005819: spindle	2.91E-02
40	GO:0031966: mitochondrial membrane	3.85E-02
41	GO:0016607: nuclear speck	4.67E-02
42	GO:0005834: heterotrimeric G-protein complex	4.78E-02