GO Enrichment Analysis of Co-expressed Genes with
AT5G39850
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 2 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:0006384: transcription initiation from RNA polymerase III promoter | 0.00E+00 |
| 6 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 7 | GO:0006412: translation | 7.49E-146 |
| 8 | GO:0042254: ribosome biogenesis | 1.78E-45 |
| 9 | GO:0000027: ribosomal large subunit assembly | 1.89E-11 |
| 10 | GO:0006626: protein targeting to mitochondrion | 2.52E-08 |
| 11 | GO:0000028: ribosomal small subunit assembly | 9.79E-08 |
| 12 | GO:0000387: spliceosomal snRNP assembly | 4.05E-07 |
| 13 | GO:0009955: adaxial/abaxial pattern specification | 3.66E-06 |
| 14 | GO:1902626: assembly of large subunit precursor of preribosome | 1.59E-05 |
| 15 | GO:0002181: cytoplasmic translation | 1.59E-05 |
| 16 | GO:0031167: rRNA methylation | 1.00E-04 |
| 17 | GO:0030150: protein import into mitochondrial matrix | 1.21E-04 |
| 18 | GO:0006407: rRNA export from nucleus | 3.14E-04 |
| 19 | GO:0031120: snRNA pseudouridine synthesis | 3.14E-04 |
| 20 | GO:0031118: rRNA pseudouridine synthesis | 3.14E-04 |
| 21 | GO:0015801: aromatic amino acid transport | 3.14E-04 |
| 22 | GO:0030490: maturation of SSU-rRNA | 3.14E-04 |
| 23 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.14E-04 |
| 24 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.14E-04 |
| 25 | GO:0009735: response to cytokinin | 3.16E-04 |
| 26 | GO:0001510: RNA methylation | 3.98E-04 |
| 27 | GO:0006364: rRNA processing | 4.10E-04 |
| 28 | GO:0080156: mitochondrial mRNA modification | 4.24E-04 |
| 29 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 6.87E-04 |
| 30 | GO:0048569: post-embryonic animal organ development | 6.87E-04 |
| 31 | GO:0043981: histone H4-K5 acetylation | 6.87E-04 |
| 32 | GO:0009967: positive regulation of signal transduction | 6.87E-04 |
| 33 | GO:0042256: mature ribosome assembly | 1.11E-03 |
| 34 | GO:0006228: UTP biosynthetic process | 1.60E-03 |
| 35 | GO:0006164: purine nucleotide biosynthetic process | 1.60E-03 |
| 36 | GO:0007004: telomere maintenance via telomerase | 1.60E-03 |
| 37 | GO:0070301: cellular response to hydrogen peroxide | 1.60E-03 |
| 38 | GO:0006241: CTP biosynthetic process | 1.60E-03 |
| 39 | GO:0006165: nucleoside diphosphate phosphorylation | 1.60E-03 |
| 40 | GO:0008283: cell proliferation | 1.76E-03 |
| 41 | GO:0042274: ribosomal small subunit biogenesis | 2.14E-03 |
| 42 | GO:0006183: GTP biosynthetic process | 2.14E-03 |
| 43 | GO:0008033: tRNA processing | 2.80E-03 |
| 44 | GO:0010197: polar nucleus fusion | 3.01E-03 |
| 45 | GO:0000741: karyogamy | 3.38E-03 |
| 46 | GO:0045040: protein import into mitochondrial outer membrane | 3.38E-03 |
| 47 | GO:0016070: RNA metabolic process | 3.38E-03 |
| 48 | GO:0000470: maturation of LSU-rRNA | 3.38E-03 |
| 49 | GO:0000245: spliceosomal complex assembly | 4.06E-03 |
| 50 | GO:0016444: somatic cell DNA recombination | 4.06E-03 |
| 51 | GO:0000398: mRNA splicing, via spliceosome | 4.83E-03 |
| 52 | GO:0001522: pseudouridine synthesis | 5.57E-03 |
| 53 | GO:0035265: organ growth | 5.57E-03 |
| 54 | GO:0001558: regulation of cell growth | 6.39E-03 |
| 55 | GO:0048507: meristem development | 7.24E-03 |
| 56 | GO:0006189: 'de novo' IMP biosynthetic process | 7.24E-03 |
| 57 | GO:0007338: single fertilization | 7.24E-03 |
| 58 | GO:0015770: sucrose transport | 1.00E-02 |
| 59 | GO:0010015: root morphogenesis | 1.00E-02 |
| 60 | GO:0006913: nucleocytoplasmic transport | 1.00E-02 |
| 61 | GO:0008380: RNA splicing | 1.01E-02 |
| 62 | GO:0006820: anion transport | 1.11E-02 |
| 63 | GO:0010102: lateral root morphogenesis | 1.21E-02 |
| 64 | GO:2000028: regulation of photoperiodism, flowering | 1.21E-02 |
| 65 | GO:0009965: leaf morphogenesis | 1.29E-02 |
| 66 | GO:0006446: regulation of translational initiation | 1.32E-02 |
| 67 | GO:0048467: gynoecium development | 1.32E-02 |
| 68 | GO:0006289: nucleotide-excision repair | 1.66E-02 |
| 69 | GO:0051302: regulation of cell division | 1.78E-02 |
| 70 | GO:0003333: amino acid transmembrane transport | 1.91E-02 |
| 71 | GO:0051260: protein homooligomerization | 1.91E-02 |
| 72 | GO:0010431: seed maturation | 1.91E-02 |
| 73 | GO:0006334: nucleosome assembly | 1.91E-02 |
| 74 | GO:0007005: mitochondrion organization | 2.03E-02 |
| 75 | GO:0040007: growth | 2.16E-02 |
| 76 | GO:0071215: cellular response to abscisic acid stimulus | 2.16E-02 |
| 77 | GO:0042127: regulation of cell proliferation | 2.29E-02 |
| 78 | GO:0000413: protein peptidyl-prolyl isomerization | 2.57E-02 |
| 79 | GO:0009793: embryo development ending in seed dormancy | 2.96E-02 |
| 80 | GO:0006635: fatty acid beta-oxidation | 3.15E-02 |
| 81 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 3.15E-02 |
| 82 | GO:0006397: mRNA processing | 3.19E-02 |
| 83 | GO:0006413: translational initiation | 3.57E-02 |
| 84 | GO:0009567: double fertilization forming a zygote and endosperm | 3.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 3 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 4 | GO:0003735: structural constituent of ribosome | 6.69E-171 |
| 5 | GO:0003729: mRNA binding | 1.92E-30 |
| 6 | GO:0019843: rRNA binding | 1.70E-16 |
| 7 | GO:0003723: RNA binding | 1.97E-10 |
| 8 | GO:0030515: snoRNA binding | 5.87E-06 |
| 9 | GO:0008649: rRNA methyltransferase activity | 1.59E-05 |
| 10 | GO:0008097: 5S rRNA binding | 3.55E-05 |
| 11 | GO:0001056: RNA polymerase III activity | 4.93E-05 |
| 12 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.07E-04 |
| 13 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.10E-04 |
| 14 | GO:0001055: RNA polymerase II activity | 5.66E-04 |
| 15 | GO:0005078: MAP-kinase scaffold activity | 6.87E-04 |
| 16 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 6.87E-04 |
| 17 | GO:0015173: aromatic amino acid transmembrane transporter activity | 6.87E-04 |
| 18 | GO:0070034: telomerase RNA binding | 6.87E-04 |
| 19 | GO:0001054: RNA polymerase I activity | 7.62E-04 |
| 20 | GO:0015266: protein channel activity | 9.84E-04 |
| 21 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.11E-03 |
| 22 | GO:0004550: nucleoside diphosphate kinase activity | 1.60E-03 |
| 23 | GO:0005275: amine transmembrane transporter activity | 2.74E-03 |
| 24 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 3.38E-03 |
| 25 | GO:0008235: metalloexopeptidase activity | 4.80E-03 |
| 26 | GO:0043022: ribosome binding | 5.57E-03 |
| 27 | GO:0015288: porin activity | 5.57E-03 |
| 28 | GO:0008308: voltage-gated anion channel activity | 6.39E-03 |
| 29 | GO:0008515: sucrose transmembrane transporter activity | 1.00E-02 |
| 30 | GO:0044183: protein binding involved in protein folding | 1.00E-02 |
| 31 | GO:0051119: sugar transmembrane transporter activity | 1.43E-02 |
| 32 | GO:0051087: chaperone binding | 1.78E-02 |
| 33 | GO:0003743: translation initiation factor activity | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 2 | GO:0043186: P granule | 0.00E+00 |
| 3 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 4 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 4.11E-115 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 2.49E-101 |
| 7 | GO:0022626: cytosolic ribosome | 4.32E-96 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 1.95E-71 |
| 9 | GO:0005730: nucleolus | 4.14E-39 |
| 10 | GO:0005737: cytoplasm | 1.66E-31 |
| 11 | GO:0005829: cytosol | 4.36E-23 |
| 12 | GO:0009506: plasmodesma | 1.01E-18 |
| 13 | GO:0015934: large ribosomal subunit | 7.65E-17 |
| 14 | GO:0016020: membrane | 3.04E-13 |
| 15 | GO:0015935: small ribosomal subunit | 4.27E-11 |
| 16 | GO:0005774: vacuolar membrane | 2.67E-10 |
| 17 | GO:0005773: vacuole | 3.08E-07 |
| 18 | GO:0015030: Cajal body | 4.05E-07 |
| 19 | GO:0005618: cell wall | 1.25E-06 |
| 20 | GO:0009507: chloroplast | 5.36E-06 |
| 21 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.19E-05 |
| 22 | GO:0034719: SMN-Sm protein complex | 1.59E-05 |
| 23 | GO:0005666: DNA-directed RNA polymerase III complex | 2.37E-05 |
| 24 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.93E-05 |
| 25 | GO:0019013: viral nucleocapsid | 6.06E-05 |
| 26 | GO:0005682: U5 snRNP | 6.35E-05 |
| 27 | GO:0005687: U4 snRNP | 1.00E-04 |
| 28 | GO:0097526: spliceosomal tri-snRNP complex | 1.00E-04 |
| 29 | GO:0031428: box C/D snoRNP complex | 1.45E-04 |
| 30 | GO:0005689: U12-type spliceosomal complex | 1.97E-04 |
| 31 | GO:0030686: 90S preribosome | 3.14E-04 |
| 32 | GO:0005742: mitochondrial outer membrane translocase complex | 3.98E-04 |
| 33 | GO:0005736: DNA-directed RNA polymerase I complex | 4.78E-04 |
| 34 | GO:0005685: U1 snRNP | 4.78E-04 |
| 35 | GO:0005681: spliceosomal complex | 5.33E-04 |
| 36 | GO:0071011: precatalytic spliceosome | 5.66E-04 |
| 37 | GO:0005686: U2 snRNP | 6.60E-04 |
| 38 | GO:0000418: DNA-directed RNA polymerase IV complex | 6.60E-04 |
| 39 | GO:0071010: prespliceosome | 6.87E-04 |
| 40 | GO:0071013: catalytic step 2 spliceosome | 7.62E-04 |
| 41 | GO:0032040: small-subunit processome | 8.70E-04 |
| 42 | GO:0034715: pICln-Sm protein complex | 1.11E-03 |
| 43 | GO:0000439: core TFIIH complex | 1.11E-03 |
| 44 | GO:0000419: DNA-directed RNA polymerase V complex | 1.37E-03 |
| 45 | GO:0005758: mitochondrial intermembrane space | 1.52E-03 |
| 46 | GO:0031429: box H/ACA snoRNP complex | 1.60E-03 |
| 47 | GO:0000243: commitment complex | 3.38E-03 |
| 48 | GO:0016272: prefoldin complex | 4.06E-03 |
| 49 | GO:0030529: intracellular ribonucleoprotein complex | 5.37E-03 |
| 50 | GO:0071004: U2-type prespliceosome | 5.57E-03 |
| 51 | GO:0046930: pore complex | 6.39E-03 |
| 52 | GO:0005743: mitochondrial inner membrane | 7.07E-03 |
| 53 | GO:0005763: mitochondrial small ribosomal subunit | 7.24E-03 |
| 54 | GO:0005886: plasma membrane | 7.68E-03 |
| 55 | GO:0016604: nuclear body | 8.14E-03 |
| 56 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.00E-02 |
| 57 | GO:0031307: integral component of mitochondrial outer membrane | 1.11E-02 |
| 58 | GO:0005741: mitochondrial outer membrane | 1.91E-02 |
| 59 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.29E-02 |
| 60 | GO:0016592: mediator complex | 3.30E-02 |
| 61 | GO:0005622: intracellular | 4.36E-02 |