Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G39830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:0006429: leucyl-tRNA aminoacylation0.00E+00
10GO:0000023: maltose metabolic process0.00E+00
11GO:1905421: regulation of plant organ morphogenesis0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0030155: regulation of cell adhesion0.00E+00
14GO:0019323: pentose catabolic process0.00E+00
15GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
16GO:0015979: photosynthesis1.73E-16
17GO:0032544: plastid translation6.51E-14
18GO:0009735: response to cytokinin7.70E-14
19GO:0006412: translation2.66E-11
20GO:0009773: photosynthetic electron transport in photosystem I1.99E-10
21GO:0042254: ribosome biogenesis1.84E-08
22GO:0010027: thylakoid membrane organization2.13E-07
23GO:0009409: response to cold2.17E-07
24GO:0019464: glycine decarboxylation via glycine cleavage system6.79E-07
25GO:0019252: starch biosynthetic process1.73E-06
26GO:0009658: chloroplast organization2.93E-06
27GO:0030388: fructose 1,6-bisphosphate metabolic process5.76E-06
28GO:0010196: nonphotochemical quenching8.13E-06
29GO:0015995: chlorophyll biosynthetic process8.50E-06
30GO:0006418: tRNA aminoacylation for protein translation8.60E-06
31GO:0005978: glycogen biosynthetic process1.22E-05
32GO:0006000: fructose metabolic process2.02E-05
33GO:0005983: starch catabolic process6.61E-05
34GO:0010021: amylopectin biosynthetic process7.90E-05
35GO:0045727: positive regulation of translation7.90E-05
36GO:0032543: mitochondrial translation1.23E-04
37GO:0010190: cytochrome b6f complex assembly1.78E-04
38GO:1901259: chloroplast rRNA processing2.41E-04
39GO:0042742: defense response to bacterium2.70E-04
40GO:0009645: response to low light intensity stimulus3.12E-04
41GO:0005980: glycogen catabolic process3.57E-04
42GO:0006438: valyl-tRNA aminoacylation3.57E-04
43GO:0043489: RNA stabilization3.57E-04
44GO:0044262: cellular carbohydrate metabolic process3.57E-04
45GO:0080093: regulation of photorespiration3.57E-04
46GO:0031998: regulation of fatty acid beta-oxidation3.57E-04
47GO:0034337: RNA folding3.57E-04
48GO:0006431: methionyl-tRNA aminoacylation3.57E-04
49GO:0000025: maltose catabolic process3.57E-04
50GO:0006002: fructose 6-phosphate metabolic process4.81E-04
51GO:0010206: photosystem II repair5.76E-04
52GO:0005982: starch metabolic process6.80E-04
53GO:0010205: photoinhibition6.80E-04
54GO:0019388: galactose catabolic process7.77E-04
55GO:0005976: polysaccharide metabolic process7.77E-04
56GO:0007154: cell communication7.77E-04
57GO:0018026: peptidyl-lysine monomethylation7.77E-04
58GO:0090342: regulation of cell aging7.77E-04
59GO:0010270: photosystem II oxygen evolving complex assembly7.77E-04
60GO:0009629: response to gravity7.77E-04
61GO:0018119: peptidyl-cysteine S-nitrosylation9.13E-04
62GO:0006094: gluconeogenesis1.18E-03
63GO:0005986: sucrose biosynthetic process1.18E-03
64GO:0009817: defense response to fungus, incompatible interaction1.20E-03
65GO:0006518: peptide metabolic process1.26E-03
66GO:0090153: regulation of sphingolipid biosynthetic process1.26E-03
67GO:0016050: vesicle organization1.26E-03
68GO:0048281: inflorescence morphogenesis1.26E-03
69GO:0010731: protein glutathionylation1.81E-03
70GO:0006424: glutamyl-tRNA aminoacylation1.81E-03
71GO:0006165: nucleoside diphosphate phosphorylation1.81E-03
72GO:0006228: UTP biosynthetic process1.81E-03
73GO:0010148: transpiration1.81E-03
74GO:0009590: detection of gravity1.81E-03
75GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.81E-03
76GO:0006241: CTP biosynthetic process1.81E-03
77GO:0009052: pentose-phosphate shunt, non-oxidative branch1.81E-03
78GO:0006289: nucleotide-excision repair1.83E-03
79GO:0045454: cell redox homeostasis1.90E-03
80GO:0009768: photosynthesis, light harvesting in photosystem I2.03E-03
81GO:0006810: transport2.27E-03
82GO:0010600: regulation of auxin biosynthetic process2.44E-03
83GO:0006546: glycine catabolic process2.44E-03
84GO:0051205: protein insertion into membrane2.44E-03
85GO:0010037: response to carbon dioxide2.44E-03
86GO:0006808: regulation of nitrogen utilization2.44E-03
87GO:0010109: regulation of photosynthesis2.44E-03
88GO:0015976: carbon utilization2.44E-03
89GO:0051322: anaphase2.44E-03
90GO:0009765: photosynthesis, light harvesting2.44E-03
91GO:0006109: regulation of carbohydrate metabolic process2.44E-03
92GO:0006183: GTP biosynthetic process2.44E-03
93GO:2000122: negative regulation of stomatal complex development2.44E-03
94GO:0006284: base-excision repair2.89E-03
95GO:0016120: carotene biosynthetic process3.11E-03
96GO:0006544: glycine metabolic process3.11E-03
97GO:0045038: protein import into chloroplast thylakoid membrane3.11E-03
98GO:0006097: glyoxylate cycle3.11E-03
99GO:0006461: protein complex assembly3.11E-03
100GO:0016123: xanthophyll biosynthetic process3.11E-03
101GO:0016117: carotenoid biosynthetic process3.13E-03
102GO:0006828: manganese ion transport3.85E-03
103GO:0006563: L-serine metabolic process3.85E-03
104GO:0010304: PSII associated light-harvesting complex II catabolic process3.85E-03
105GO:0042549: photosystem II stabilization3.85E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.85E-03
107GO:0000470: maturation of LSU-rRNA3.85E-03
108GO:0009913: epidermal cell differentiation3.85E-03
109GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.64E-03
110GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.64E-03
111GO:0009955: adaxial/abaxial pattern specification4.64E-03
112GO:0030163: protein catabolic process5.12E-03
113GO:0070370: cellular heat acclimation5.48E-03
114GO:0010103: stomatal complex morphogenesis5.48E-03
115GO:0010161: red light signaling pathway5.48E-03
116GO:0006605: protein targeting6.37E-03
117GO:0009704: de-etiolation6.37E-03
118GO:0048564: photosystem I assembly6.37E-03
119GO:0010928: regulation of auxin mediated signaling pathway6.37E-03
120GO:0009657: plastid organization7.30E-03
121GO:0017004: cytochrome complex assembly7.30E-03
122GO:0001558: regulation of cell growth7.30E-03
123GO:0055114: oxidation-reduction process7.59E-03
124GO:0006783: heme biosynthetic process8.29E-03
125GO:0018298: protein-chromophore linkage8.51E-03
126GO:0048481: plant ovule development8.51E-03
127GO:0006979: response to oxidative stress8.80E-03
128GO:0035999: tetrahydrofolate interconversion9.31E-03
129GO:0042761: very long-chain fatty acid biosynthetic process9.31E-03
130GO:0007623: circadian rhythm1.03E-02
131GO:0006782: protoporphyrinogen IX biosynthetic process1.04E-02
132GO:0048829: root cap development1.04E-02
133GO:0009853: photorespiration1.08E-02
134GO:0034599: cellular response to oxidative stress1.13E-02
135GO:0072593: reactive oxygen species metabolic process1.15E-02
136GO:0009073: aromatic amino acid family biosynthetic process1.15E-02
137GO:0043085: positive regulation of catalytic activity1.15E-02
138GO:0000272: polysaccharide catabolic process1.15E-02
139GO:0006415: translational termination1.15E-02
140GO:0009750: response to fructose1.15E-02
141GO:0016485: protein processing1.15E-02
142GO:0006816: calcium ion transport1.15E-02
143GO:0008152: metabolic process1.23E-02
144GO:0045037: protein import into chloroplast stroma1.27E-02
145GO:0010628: positive regulation of gene expression1.39E-02
146GO:0010102: lateral root morphogenesis1.39E-02
147GO:0006108: malate metabolic process1.39E-02
148GO:0006006: glucose metabolic process1.39E-02
149GO:0009767: photosynthetic electron transport chain1.39E-02
150GO:0010207: photosystem II assembly1.51E-02
151GO:0010020: chloroplast fission1.51E-02
152GO:0019253: reductive pentose-phosphate cycle1.51E-02
153GO:0009266: response to temperature stimulus1.51E-02
154GO:0009644: response to high light intensity1.51E-02
155GO:0005985: sucrose metabolic process1.64E-02
156GO:0010025: wax biosynthetic process1.77E-02
157GO:0006636: unsaturated fatty acid biosynthetic process1.77E-02
158GO:0006364: rRNA processing1.89E-02
159GO:0009585: red, far-red light phototransduction1.89E-02
160GO:0000027: ribosomal large subunit assembly1.90E-02
161GO:0009944: polarity specification of adaxial/abaxial axis1.90E-02
162GO:0005975: carbohydrate metabolic process1.93E-02
163GO:0007017: microtubule-based process2.04E-02
164GO:0051302: regulation of cell division2.04E-02
165GO:0016114: terpenoid biosynthetic process2.18E-02
166GO:0061077: chaperone-mediated protein folding2.18E-02
167GO:0035428: hexose transmembrane transport2.33E-02
168GO:0030245: cellulose catabolic process2.33E-02
169GO:0010017: red or far-red light signaling pathway2.33E-02
170GO:0016226: iron-sulfur cluster assembly2.33E-02
171GO:0009686: gibberellin biosynthetic process2.48E-02
172GO:0009411: response to UV2.48E-02
173GO:0001944: vasculature development2.48E-02
174GO:0009624: response to nematode2.69E-02
175GO:0042335: cuticle development2.95E-02
176GO:0000413: protein peptidyl-prolyl isomerization2.95E-02
177GO:0042631: cellular response to water deprivation2.95E-02
178GO:0006508: proteolysis3.07E-02
179GO:0006662: glycerol ether metabolic process3.11E-02
180GO:0048868: pollen tube development3.11E-02
181GO:0046323: glucose import3.11E-02
182GO:0015986: ATP synthesis coupled proton transport3.27E-02
183GO:0009646: response to absence of light3.27E-02
184GO:0048825: cotyledon development3.44E-02
185GO:0000302: response to reactive oxygen species3.61E-02
186GO:0009790: embryo development3.92E-02
187GO:0010090: trichome morphogenesis3.96E-02
188GO:0009793: embryo development ending in seed dormancy4.22E-02
189GO:0000910: cytokinesis4.50E-02
RankGO TermAdjusted P value
1GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0016166: phytoene dehydrogenase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0046408: chlorophyll synthetase activity0.00E+00
7GO:0009899: ent-kaurene synthase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0051738: xanthophyll binding0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
12GO:0005363: maltose transmembrane transporter activity0.00E+00
13GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
14GO:0019843: rRNA binding2.68E-22
15GO:0003735: structural constituent of ribosome1.37E-13
16GO:0005528: FK506 binding1.63E-07
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.91E-07
18GO:0008266: poly(U) RNA binding3.26E-06
19GO:0010297: heteropolysaccharide binding5.76E-06
20GO:0033201: alpha-1,4-glucan synthase activity5.76E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.76E-06
22GO:0002161: aminoacyl-tRNA editing activity2.02E-05
23GO:0004373: glycogen (starch) synthase activity2.02E-05
24GO:0004812: aminoacyl-tRNA ligase activity2.20E-05
25GO:0016851: magnesium chelatase activity4.45E-05
26GO:0004375: glycine dehydrogenase (decarboxylating) activity4.45E-05
27GO:0009011: starch synthase activity7.90E-05
28GO:0004222: metalloendopeptidase activity1.78E-04
29GO:0051920: peroxiredoxin activity2.41E-04
30GO:0004134: 4-alpha-glucanotransferase activity3.57E-04
31GO:0004645: phosphorylase activity3.57E-04
32GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.57E-04
33GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.57E-04
34GO:0008158: hedgehog receptor activity3.57E-04
35GO:0004853: uroporphyrinogen decarboxylase activity3.57E-04
36GO:0045485: omega-6 fatty acid desaturase activity3.57E-04
37GO:0004832: valine-tRNA ligase activity3.57E-04
38GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.57E-04
39GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.57E-04
40GO:0004825: methionine-tRNA ligase activity3.57E-04
41GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.57E-04
42GO:0008184: glycogen phosphorylase activity3.57E-04
43GO:0004856: xylulokinase activity3.57E-04
44GO:0009496: plastoquinol--plastocyanin reductase activity3.57E-04
45GO:0016209: antioxidant activity3.92E-04
46GO:0050662: coenzyme binding4.53E-04
47GO:0004614: phosphoglucomutase activity7.77E-04
48GO:0008967: phosphoglycolate phosphatase activity7.77E-04
49GO:0010291: carotene beta-ring hydroxylase activity7.77E-04
50GO:0004750: ribulose-phosphate 3-epimerase activity7.77E-04
51GO:0018708: thiol S-methyltransferase activity7.77E-04
52GO:0003844: 1,4-alpha-glucan branching enzyme activity7.77E-04
53GO:0016168: chlorophyll binding9.26E-04
54GO:0017150: tRNA dihydrouridine synthase activity1.26E-03
55GO:0004148: dihydrolipoyl dehydrogenase activity1.26E-03
56GO:0045174: glutathione dehydrogenase (ascorbate) activity1.26E-03
57GO:0030267: glyoxylate reductase (NADP) activity1.26E-03
58GO:0015462: ATPase-coupled protein transmembrane transporter activity1.26E-03
59GO:0004324: ferredoxin-NADP+ reductase activity1.26E-03
60GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.26E-03
61GO:0043169: cation binding1.26E-03
62GO:0031409: pigment binding1.66E-03
63GO:0016491: oxidoreductase activity1.75E-03
64GO:0016149: translation release factor activity, codon specific1.81E-03
65GO:0004550: nucleoside diphosphate kinase activity1.81E-03
66GO:0043023: ribosomal large subunit binding1.81E-03
67GO:0019199: transmembrane receptor protein kinase activity2.44E-03
68GO:0008878: glucose-1-phosphate adenylyltransferase activity2.44E-03
69GO:0042277: peptide binding2.44E-03
70GO:0016279: protein-lysine N-methyltransferase activity2.44E-03
71GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.44E-03
72GO:0019104: DNA N-glycosylase activity2.44E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor3.11E-03
74GO:0004040: amidase activity3.11E-03
75GO:0008725: DNA-3-methyladenine glycosylase activity3.11E-03
76GO:0004372: glycine hydroxymethyltransferase activity3.11E-03
77GO:0003959: NADPH dehydrogenase activity3.11E-03
78GO:0004130: cytochrome-c peroxidase activity3.85E-03
79GO:0016615: malate dehydrogenase activity3.85E-03
80GO:2001070: starch binding3.85E-03
81GO:0048038: quinone binding4.50E-03
82GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.64E-03
83GO:0004602: glutathione peroxidase activity4.64E-03
84GO:0030060: L-malate dehydrogenase activity4.64E-03
85GO:0008237: metallopeptidase activity5.80E-03
86GO:0004033: aldo-keto reductase (NADP) activity6.37E-03
87GO:0015078: hydrogen ion transmembrane transporter activity7.30E-03
88GO:0004252: serine-type endopeptidase activity7.83E-03
89GO:0003747: translation release factor activity8.29E-03
90GO:0005384: manganese ion transmembrane transporter activity9.31E-03
91GO:0008047: enzyme activator activity1.04E-02
92GO:0015386: potassium:proton antiporter activity1.15E-02
93GO:0047372: acylglycerol lipase activity1.15E-02
94GO:0000049: tRNA binding1.27E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity1.39E-02
96GO:0004089: carbonate dehydratase activity1.39E-02
97GO:0015095: magnesium ion transmembrane transporter activity1.39E-02
98GO:0031072: heat shock protein binding1.39E-02
99GO:0016787: hydrolase activity1.46E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding1.51E-02
101GO:0000287: magnesium ion binding1.76E-02
102GO:0004601: peroxidase activity1.80E-02
103GO:0051536: iron-sulfur cluster binding1.90E-02
104GO:0004857: enzyme inhibitor activity1.90E-02
105GO:0015079: potassium ion transmembrane transporter activity2.04E-02
106GO:0004176: ATP-dependent peptidase activity2.18E-02
107GO:0008810: cellulase activity2.48E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.48E-02
109GO:0047134: protein-disulfide reductase activity2.79E-02
110GO:0004791: thioredoxin-disulfide reductase activity3.27E-02
111GO:0005355: glucose transmembrane transporter activity3.27E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.46E-02
113GO:0030170: pyridoxal phosphate binding3.73E-02
114GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.96E-02
115GO:0003684: damaged DNA binding4.14E-02
116GO:0005200: structural constituent of cytoskeleton4.32E-02
117GO:0003729: mRNA binding4.86E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0042579: microbody0.00E+00
5GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
6GO:0009507: chloroplast8.19E-110
7GO:0009941: chloroplast envelope3.28E-73
8GO:0009570: chloroplast stroma1.77E-72
9GO:0009534: chloroplast thylakoid6.52E-60
10GO:0009535: chloroplast thylakoid membrane3.96E-53
11GO:0009579: thylakoid8.44E-42
12GO:0009543: chloroplast thylakoid lumen1.85E-17
13GO:0005840: ribosome2.32E-16
14GO:0031977: thylakoid lumen1.40E-15
15GO:0010287: plastoglobule1.44E-14
16GO:0010319: stromule9.47E-11
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.17E-09
18GO:0009706: chloroplast inner membrane6.22E-08
19GO:0016020: membrane3.27E-07
20GO:0009508: plastid chromosome2.46E-06
21GO:0030095: chloroplast photosystem II3.26E-06
22GO:0009295: nucleoid4.11E-06
23GO:0009533: chloroplast stromal thylakoid8.13E-06
24GO:0048046: apoplast1.17E-05
25GO:0009501: amyloplast1.22E-05
26GO:0009538: photosystem I reaction center1.22E-05
27GO:0010007: magnesium chelatase complex2.02E-05
28GO:0005960: glycine cleavage complex4.45E-05
29GO:0031969: chloroplast membrane5.31E-05
30GO:0009536: plastid1.34E-04
31GO:0009654: photosystem II oxygen evolving complex1.84E-04
32GO:0009782: photosystem I antenna complex3.57E-04
33GO:0009523: photosystem II4.97E-04
34GO:0019898: extrinsic component of membrane4.97E-04
35GO:0030093: chloroplast photosystem I7.77E-04
36GO:0000427: plastid-encoded plastid RNA polymerase complex7.77E-04
37GO:0000311: plastid large ribosomal subunit1.04E-03
38GO:0009509: chromoplast1.26E-03
39GO:0015934: large ribosomal subunit1.44E-03
40GO:0030076: light-harvesting complex1.49E-03
41GO:0042651: thylakoid membrane2.03E-03
42GO:0009517: PSII associated light-harvesting complex II2.44E-03
43GO:0055035: plastid thylakoid membrane3.11E-03
44GO:0009512: cytochrome b6f complex3.11E-03
45GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.85E-03
46GO:0009522: photosystem I3.92E-03
47GO:0009840: chloroplastic endopeptidase Clp complex4.64E-03
48GO:0042644: chloroplast nucleoid8.29E-03
49GO:0045298: tubulin complex8.29E-03
50GO:0005763: mitochondrial small ribosomal subunit8.29E-03
51GO:0032040: small-subunit processome1.27E-02
52GO:0009574: preprophase band1.39E-02
53GO:0000312: plastid small ribosomal subunit1.51E-02
54GO:0015935: small ribosomal subunit2.18E-02
55GO:0009532: plastid stroma2.18E-02
56GO:0022625: cytosolic large ribosomal subunit2.52E-02
57GO:0005623: cell3.46E-02
58GO:0005759: mitochondrial matrix4.22E-02
59GO:0030529: intracellular ribonucleoprotein complex4.69E-02
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Gene type



Gene DE type