co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G35970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
2	GO:0046677: response to antibiotic	0.00E+00
3	GO:0015882: L-ascorbic acid transport	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0098586: cellular response to virus	0.00E+00
9	GO:0015979: photosynthesis	8.79E-10
10	GO:0010114: response to red light	1.57E-08
11	GO:0009644: response to high light intensity	2.03E-08
12	GO:0006021: inositol biosynthetic process	3.67E-08
13	GO:0015995: chlorophyll biosynthetic process	1.25E-07
14	GO:0009768: photosynthesis, light harvesting in photosystem I	2.53E-07
15	GO:0009645: response to low light intensity stimulus	4.82E-07
16	GO:0042853: L-alanine catabolic process	6.85E-07
17	GO:0010136: ureide catabolic process	2.59E-06
18	GO:0006145: purine nucleobase catabolic process	6.10E-06
19	GO:0018298: protein-chromophore linkage	6.65E-06
20	GO:0010218: response to far red light	8.21E-06
21	GO:0009637: response to blue light	1.10E-05
22	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.87E-05
23	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.87E-05
24	GO:0055114: oxidation-reduction process	3.23E-05
25	GO:0010189: vitamin E biosynthetic process	4.06E-05
26	GO:0009769: photosynthesis, light harvesting in photosystem II	5.48E-05
27	GO:0009642: response to light intensity	7.12E-05
28	GO:0010206: photosystem II repair	1.11E-04
29	GO:0051775: response to redox state	1.16E-04
30	GO:0071277: cellular response to calcium ion	1.16E-04
31	GO:0006659: phosphatidylserine biosynthetic process	1.16E-04
32	GO:0010028: xanthophyll cycle	1.16E-04
33	GO:0009773: photosynthetic electron transport in photosystem I	1.86E-04
34	GO:0009853: photorespiration	2.10E-04
35	GO:0006094: gluconeogenesis	2.47E-04
36	GO:0042548: regulation of photosynthesis, light reaction	2.69E-04
37	GO:0010042: response to manganese ion	2.69E-04
38	GO:0000256: allantoin catabolic process	2.69E-04
39	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.69E-04
40	GO:0016122: xanthophyll metabolic process	2.69E-04
41	GO:0006729: tetrahydrobiopterin biosynthetic process	2.69E-04
42	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.69E-04
43	GO:0046741: transport of virus in host, tissue to tissue	2.69E-04
44	GO:0009915: phloem sucrose loading	2.69E-04
45	GO:0010207: photosystem II assembly	2.81E-04
46	GO:0009416: response to light stimulus	4.38E-04
47	GO:0006000: fructose metabolic process	4.45E-04
48	GO:0090391: granum assembly	4.45E-04
49	GO:0006433: prolyl-tRNA aminoacylation	4.45E-04
50	GO:0009269: response to desiccation	4.74E-04
51	GO:0009793: embryo development ending in seed dormancy	5.00E-04
52	GO:0043572: plastid fission	6.38E-04
53	GO:2001141: regulation of RNA biosynthetic process	6.38E-04
54	GO:0006020: inositol metabolic process	6.38E-04
55	GO:0071484: cellular response to light intensity	6.38E-04
56	GO:0006107: oxaloacetate metabolic process	6.38E-04
57	GO:0071483: cellular response to blue light	8.47E-04
58	GO:0006734: NADH metabolic process	8.47E-04
59	GO:0010109: regulation of photosynthesis	8.47E-04
60	GO:0006545: glycine biosynthetic process	8.47E-04
61	GO:0009765: photosynthesis, light harvesting	8.47E-04
62	GO:0015994: chlorophyll metabolic process	8.47E-04
63	GO:0009791: post-embryonic development	8.79E-04
64	GO:0019252: starch biosynthetic process	8.79E-04
65	GO:0008654: phospholipid biosynthetic process	8.79E-04
66	GO:0010117: photoprotection	1.07E-03
67	GO:0016123: xanthophyll biosynthetic process	1.07E-03
68	GO:0046855: inositol phosphate dephosphorylation	1.31E-03
69	GO:0009643: photosynthetic acclimation	1.31E-03
70	GO:0050665: hydrogen peroxide biosynthetic process	1.31E-03
71	GO:0007623: circadian rhythm	1.34E-03
72	GO:0009854: oxidative photosynthetic carbon pathway	1.56E-03
73	GO:0009648: photoperiodism	1.56E-03
74	GO:0071470: cellular response to osmotic stress	1.56E-03
75	GO:0010196: nonphotochemical quenching	1.84E-03
76	GO:0030026: cellular manganese ion homeostasis	1.84E-03
77	GO:0009735: response to cytokinin	1.89E-03
78	GO:0009704: de-etiolation	2.13E-03
79	GO:0034599: cellular response to oxidative stress	2.28E-03
80	GO:0009658: chloroplast organization	2.32E-03
81	GO:0009657: plastid organization	2.43E-03
82	GO:0010262: somatic embryogenesis	2.43E-03
83	GO:0006002: fructose 6-phosphate metabolic process	2.43E-03
84	GO:0071482: cellular response to light stimulus	2.43E-03
85	GO:0009409: response to cold	2.57E-03
86	GO:0042542: response to hydrogen peroxide	2.69E-03
87	GO:0009821: alkaloid biosynthetic process	2.74E-03
88	GO:0090333: regulation of stomatal closure	2.74E-03
89	GO:0006754: ATP biosynthetic process	2.74E-03
90	GO:0098656: anion transmembrane transport	2.74E-03
91	GO:0006098: pentose-phosphate shunt	2.74E-03
92	GO:0006995: cellular response to nitrogen starvation	3.41E-03
93	GO:0009688: abscisic acid biosynthetic process	3.41E-03
94	GO:0009641: shade avoidance	3.41E-03
95	GO:0009970: cellular response to sulfate starvation	3.41E-03
96	GO:0043085: positive regulation of catalytic activity	3.76E-03
97	GO:0006352: DNA-templated transcription, initiation	3.76E-03
98	GO:0045454: cell redox homeostasis	3.83E-03
99	GO:0006790: sulfur compound metabolic process	4.13E-03
100	GO:0006108: malate metabolic process	4.50E-03
101	GO:0055046: microgametogenesis	4.50E-03
102	GO:0005986: sucrose biosynthetic process	4.50E-03
103	GO:0048316: seed development	4.58E-03
104	GO:0010020: chloroplast fission	4.89E-03
105	GO:0019253: reductive pentose-phosphate cycle	4.89E-03
106	GO:0010223: secondary shoot formation	4.89E-03
107	GO:0009266: response to temperature stimulus	4.89E-03
108	GO:0009408: response to heat	4.99E-03
109	GO:0046688: response to copper ion	5.29E-03
110	GO:0046854: phosphatidylinositol phosphorylation	5.29E-03
111	GO:0006833: water transport	5.70E-03
112	GO:0006979: response to oxidative stress	6.40E-03
113	GO:0051302: regulation of cell division	6.56E-03
114	GO:0008299: isoprenoid biosynthetic process	6.56E-03
115	GO:0006418: tRNA aminoacylation for protein translation	6.56E-03
116	GO:0009058: biosynthetic process	7.04E-03
117	GO:0019748: secondary metabolic process	7.46E-03
118	GO:0006413: translational initiation	8.59E-03
119	GO:0016036: cellular response to phosphate starvation	8.59E-03
120	GO:0034220: ion transmembrane transport	9.38E-03
121	GO:0006606: protein import into nucleus	9.38E-03
122	GO:0006662: glycerol ether metabolic process	9.89E-03
123	GO:0010182: sugar mediated signaling pathway	9.89E-03
124	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.15E-02
125	GO:0000302: response to reactive oxygen species	1.15E-02
126	GO:0046686: response to cadmium ion	1.24E-02
127	GO:0030163: protein catabolic process	1.26E-02
128	GO:0051607: defense response to virus	1.43E-02
129	GO:0001666: response to hypoxia	1.49E-02
130	GO:0010027: thylakoid membrane organization	1.49E-02
131	GO:0016311: dephosphorylation	1.73E-02
132	GO:0048481: plant ovule development	1.80E-02
133	GO:0008219: cell death	1.80E-02
134	GO:0006811: ion transport	1.92E-02
135	GO:0007568: aging	1.99E-02
136	GO:0016051: carbohydrate biosynthetic process	2.12E-02
137	GO:0006099: tricarboxylic acid cycle	2.19E-02
138	GO:0006631: fatty acid metabolic process	2.40E-02
139	GO:0042742: defense response to bacterium	2.52E-02
140	GO:0031347: regulation of defense response	2.91E-02
141	GO:0006812: cation transport	2.99E-02
142	GO:0006364: rRNA processing	3.15E-02
143	GO:0009585: red, far-red light phototransduction	3.15E-02
144	GO:0006417: regulation of translation	3.38E-02
145	GO:0006096: glycolytic process	3.54E-02
146	GO:0009553: embryo sac development	3.96E-02
147	GO:0009624: response to nematode	4.04E-02
148	GO:0006810: transport	4.06E-02
149	GO:0006396: RNA processing	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
2	GO:0009976: tocopherol cyclase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
10	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
11	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
12	GO:0010486: manganese:proton antiporter activity	0.00E+00
13	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
14	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
15	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
16	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
17	GO:0047652: allantoate deiminase activity	0.00E+00
18	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
19	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	0.00E+00
20	GO:0008453: alanine-glyoxylate transaminase activity	3.67E-08
21	GO:0031409: pigment binding	1.55E-07
22	GO:0004512: inositol-3-phosphate synthase activity	6.85E-07
23	GO:0016168: chlorophyll binding	4.22E-06
24	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.10E-06
25	GO:0016851: magnesium chelatase activity	6.10E-06
26	GO:0016853: isomerase activity	4.72E-05
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.16E-04
28	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.16E-04
29	GO:0008746: NAD(P)+ transhydrogenase activity	1.16E-04
30	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.16E-04
31	GO:0035671: enone reductase activity	1.16E-04
32	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.16E-04
33	GO:0046872: metal ion binding	2.37E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	2.69E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	2.69E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	2.69E-04
37	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.69E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	4.45E-04
39	GO:0030267: glyoxylate reductase (NADP) activity	4.45E-04
40	GO:0004096: catalase activity	4.45E-04
41	GO:0070402: NADPH binding	4.45E-04
42	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.45E-04
43	GO:0004827: proline-tRNA ligase activity	4.45E-04
44	GO:0004373: glycogen (starch) synthase activity	4.45E-04
45	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.38E-04
46	GO:0004792: thiosulfate sulfurtransferase activity	6.38E-04
47	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	6.38E-04
48	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	6.38E-04
49	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	6.38E-04
50	GO:0009011: starch synthase activity	8.47E-04
51	GO:0008891: glycolate oxidase activity	8.47E-04
52	GO:0001053: plastid sigma factor activity	8.47E-04
53	GO:0016987: sigma factor activity	8.47E-04
54	GO:0051538: 3 iron, 4 sulfur cluster binding	1.07E-03
55	GO:0000293: ferric-chelate reductase activity	1.31E-03
56	GO:0042578: phosphoric ester hydrolase activity	1.31E-03
57	GO:0016615: malate dehydrogenase activity	1.31E-03
58	GO:0004332: fructose-bisphosphate aldolase activity	1.31E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.56E-03
60	GO:0030060: L-malate dehydrogenase activity	1.56E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.56E-03
62	GO:0050897: cobalt ion binding	1.99E-03
63	GO:0008135: translation factor activity, RNA binding	2.43E-03
64	GO:0071949: FAD binding	2.74E-03
65	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.74E-03
66	GO:0005384: manganese ion transmembrane transporter activity	3.07E-03
67	GO:0016844: strictosidine synthase activity	3.07E-03
68	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.07E-03
69	GO:0008047: enzyme activator activity	3.41E-03
70	GO:0005315: inorganic phosphate transmembrane transporter activity	4.50E-03
71	GO:0031072: heat shock protein binding	4.50E-03
72	GO:0003954: NADH dehydrogenase activity	6.12E-03
73	GO:0008324: cation transmembrane transporter activity	6.56E-03
74	GO:0030170: pyridoxal phosphate binding	7.41E-03
75	GO:0003727: single-stranded RNA binding	8.40E-03
76	GO:0008514: organic anion transmembrane transporter activity	8.40E-03
77	GO:0016887: ATPase activity	8.71E-03
78	GO:0047134: protein-disulfide reductase activity	8.88E-03
79	GO:0004812: aminoacyl-tRNA ligase activity	8.88E-03
80	GO:0016491: oxidoreductase activity	9.60E-03
81	GO:0010181: FMN binding	1.04E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	1.04E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.26E-02
84	GO:0008237: metallopeptidase activity	1.37E-02
85	GO:0015250: water channel activity	1.49E-02
86	GO:0008236: serine-type peptidase activity	1.73E-02
87	GO:0030145: manganese ion binding	1.99E-02
88	GO:0003746: translation elongation factor activity	2.12E-02
89	GO:0003993: acid phosphatase activity	2.19E-02
90	GO:0004185: serine-type carboxypeptidase activity	2.54E-02
91	GO:0003924: GTPase activity	2.62E-02
92	GO:0051537: 2 iron, 2 sulfur cluster binding	2.69E-02
93	GO:0043621: protein self-association	2.69E-02
94	GO:0051287: NAD binding	2.91E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.15E-02
96	GO:0016298: lipase activity	3.22E-02
97	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.63E-02
98	GO:0016874: ligase activity	3.87E-02
99	GO:0051082: unfolded protein binding	4.04E-02
100	GO:0015035: protein disulfide oxidoreductase activity	4.13E-02
101	GO:0005515: protein binding	4.68E-02
102	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.29E-28
2	GO:0009535: chloroplast thylakoid membrane	7.36E-18
3	GO:0009941: chloroplast envelope	4.74E-16
4	GO:0009534: chloroplast thylakoid	9.09E-16
5	GO:0009570: chloroplast stroma	1.40E-13
6	GO:0009579: thylakoid	5.53E-13
7	GO:0010287: plastoglobule	6.82E-09
8	GO:0010007: magnesium chelatase complex	2.59E-06
9	GO:0009706: chloroplast inner membrane	3.60E-06
10	GO:0030076: light-harvesting complex	9.25E-06
11	GO:0009517: PSII associated light-harvesting complex II	1.15E-05
12	GO:0031977: thylakoid lumen	1.58E-05
13	GO:0009522: photosystem I	4.72E-05
14	GO:0009523: photosystem II	5.26E-05
15	GO:0048046: apoplast	9.33E-05
16	GO:0005777: peroxisome	9.58E-05
17	GO:0017101: aminoacyl-tRNA synthetase multienzyme complex	1.16E-04
18	GO:0009515: granal stacked thylakoid	1.16E-04
19	GO:0009782: photosystem I antenna complex	1.16E-04
20	GO:0009569: chloroplast starch grain	2.69E-04
21	GO:0031304: intrinsic component of mitochondrial inner membrane	2.69E-04
22	GO:0042651: thylakoid membrane	4.32E-04
23	GO:0009543: chloroplast thylakoid lumen	9.02E-04
24	GO:0010319: stromule	1.19E-03
25	GO:0009514: glyoxysome	2.43E-03
26	GO:0031969: chloroplast membrane	3.05E-03
27	GO:0016602: CCAAT-binding factor complex	4.50E-03
28	GO:0009654: photosystem II oxygen evolving complex	6.56E-03
29	GO:0022626: cytosolic ribosome	9.78E-03
30	GO:0005770: late endosome	9.89E-03
31	GO:0019898: extrinsic component of membrane	1.09E-02
32	GO:0005739: mitochondrion	1.61E-02
33	GO:0009707: chloroplast outer membrane	1.80E-02
34	GO:0016020: membrane	2.30E-02
35	GO:0031902: late endosome membrane	2.40E-02
36	GO:0005747: mitochondrial respiratory chain complex I	3.63E-02
37	GO:0005623: cell	4.83E-02