Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G35590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
2GO:0001881: receptor recycling0.00E+00
3GO:0006592: ornithine biosynthetic process0.00E+00
4GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
5GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
6GO:0048870: cell motility0.00E+00
7GO:0009722: detection of cytokinin stimulus0.00E+00
8GO:0006593: ornithine catabolic process0.00E+00
9GO:0071345: cellular response to cytokine stimulus0.00E+00
10GO:0071284: cellular response to lead ion0.00E+00
11GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
12GO:0023052: signaling0.00E+00
13GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
14GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
15GO:0006511: ubiquitin-dependent protein catabolic process2.03E-26
16GO:0051603: proteolysis involved in cellular protein catabolic process5.53E-09
17GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.03E-08
18GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.94E-07
19GO:0046686: response to cadmium ion6.91E-07
20GO:0043248: proteasome assembly1.81E-06
21GO:0051788: response to misfolded protein4.02E-06
22GO:0030433: ubiquitin-dependent ERAD pathway7.27E-06
23GO:0015991: ATP hydrolysis coupled proton transport1.48E-05
24GO:0010255: glucose mediated signaling pathway3.21E-05
25GO:0015798: myo-inositol transport2.97E-04
26GO:0035266: meristem growth2.97E-04
27GO:0007292: female gamete generation2.97E-04
28GO:0009240: isopentenyl diphosphate biosynthetic process2.97E-04
29GO:0009852: auxin catabolic process2.97E-04
30GO:0003400: regulation of COPII vesicle coating2.97E-04
31GO:0010265: SCF complex assembly2.97E-04
32GO:0031468: nuclear envelope reassembly2.97E-04
33GO:0019544: arginine catabolic process to glutamate2.97E-04
34GO:0015986: ATP synthesis coupled proton transport3.17E-04
35GO:0015996: chlorophyll catabolic process3.66E-04
36GO:0030163: protein catabolic process4.52E-04
37GO:0050992: dimethylallyl diphosphate biosynthetic process6.50E-04
38GO:0019483: beta-alanine biosynthetic process6.50E-04
39GO:0015786: UDP-glucose transport6.50E-04
40GO:0006212: uracil catabolic process6.50E-04
41GO:0007163: establishment or maintenance of cell polarity6.50E-04
42GO:0006432: phenylalanyl-tRNA aminoacylation6.50E-04
43GO:0080026: response to indolebutyric acid6.50E-04
44GO:0010015: root morphogenesis7.02E-04
45GO:0006807: nitrogen compound metabolic process9.08E-04
46GO:0030835: negative regulation of actin filament depolymerization1.05E-03
47GO:0045793: positive regulation of cell size1.05E-03
48GO:0006760: folic acid-containing compound metabolic process1.05E-03
49GO:0015783: GDP-fucose transport1.05E-03
50GO:0060968: regulation of gene silencing1.05E-03
51GO:0010498: proteasomal protein catabolic process1.05E-03
52GO:0046034: ATP metabolic process1.05E-03
53GO:0008333: endosome to lysosome transport1.05E-03
54GO:0043617: cellular response to sucrose starvation1.05E-03
55GO:0051646: mitochondrion localization1.05E-03
56GO:0080121: AMP transport1.05E-03
57GO:0007030: Golgi organization1.14E-03
58GO:0006487: protein N-linked glycosylation1.40E-03
59GO:0006631: fatty acid metabolic process1.43E-03
60GO:0001676: long-chain fatty acid metabolic process1.51E-03
61GO:0032877: positive regulation of DNA endoreduplication1.51E-03
62GO:0046836: glycolipid transport1.51E-03
63GO:0051259: protein oligomerization1.51E-03
64GO:0006166: purine ribonucleoside salvage1.51E-03
65GO:0006107: oxaloacetate metabolic process1.51E-03
66GO:0009647: skotomorphogenesis1.51E-03
67GO:0072334: UDP-galactose transmembrane transport1.51E-03
68GO:0006168: adenine salvage1.51E-03
69GO:0080024: indolebutyric acid metabolic process1.51E-03
70GO:0015992: proton transport1.70E-03
71GO:0016226: iron-sulfur cluster assembly1.86E-03
72GO:0032366: intracellular sterol transport2.02E-03
73GO:0051781: positive regulation of cell division2.02E-03
74GO:0010363: regulation of plant-type hypersensitive response2.02E-03
75GO:0006221: pyrimidine nucleotide biosynthetic process2.02E-03
76GO:0044205: 'de novo' UMP biosynthetic process2.02E-03
77GO:0015867: ATP transport2.02E-03
78GO:1902183: regulation of shoot apical meristem development2.58E-03
79GO:0044209: AMP salvage2.58E-03
80GO:0009697: salicylic acid biosynthetic process2.58E-03
81GO:0030041: actin filament polymerization2.58E-03
82GO:0036065: fucosylation2.58E-03
83GO:0097428: protein maturation by iron-sulfur cluster transfer2.58E-03
84GO:0009651: response to salt stress3.14E-03
85GO:0006561: proline biosynthetic process3.19E-03
86GO:0015866: ADP transport3.19E-03
87GO:0048827: phyllome development3.19E-03
88GO:0048232: male gamete generation3.19E-03
89GO:0018105: peptidyl-serine phosphorylation3.76E-03
90GO:1901001: negative regulation of response to salt stress3.84E-03
91GO:0009612: response to mechanical stimulus3.84E-03
92GO:0006120: mitochondrial electron transport, NADH to ubiquinone3.84E-03
93GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process4.53E-03
94GO:0032880: regulation of protein localization4.53E-03
95GO:0048528: post-embryonic root development4.53E-03
96GO:0051693: actin filament capping4.53E-03
97GO:0055114: oxidation-reduction process4.95E-03
98GO:0009816: defense response to bacterium, incompatible interaction5.22E-03
99GO:0000028: ribosomal small subunit assembly5.26E-03
100GO:0045010: actin nucleation5.26E-03
101GO:0031540: regulation of anthocyanin biosynthetic process5.26E-03
102GO:0016559: peroxisome fission5.26E-03
103GO:0006644: phospholipid metabolic process5.26E-03
104GO:0009690: cytokinin metabolic process5.26E-03
105GO:0010078: maintenance of root meristem identity5.26E-03
106GO:0006506: GPI anchor biosynthetic process5.26E-03
107GO:0043562: cellular response to nitrogen levels6.03E-03
108GO:0022900: electron transport chain6.03E-03
109GO:0006526: arginine biosynthetic process6.03E-03
110GO:0009817: defense response to fungus, incompatible interaction6.45E-03
111GO:0009832: plant-type cell wall biogenesis6.78E-03
112GO:0009060: aerobic respiration6.83E-03
113GO:0000902: cell morphogenesis6.83E-03
114GO:0015780: nucleotide-sugar transport6.83E-03
115GO:0098656: anion transmembrane transport6.83E-03
116GO:0046685: response to arsenic-containing substance6.83E-03
117GO:0009821: alkaloid biosynthetic process6.83E-03
118GO:0009245: lipid A biosynthetic process6.83E-03
119GO:0080144: amino acid homeostasis6.83E-03
120GO:0006754: ATP biosynthetic process6.83E-03
121GO:0006499: N-terminal protein myristoylation7.11E-03
122GO:0006457: protein folding7.27E-03
123GO:0010043: response to zinc ion7.46E-03
124GO:0009853: photorespiration8.18E-03
125GO:0043069: negative regulation of programmed cell death8.55E-03
126GO:0048829: root cap development8.55E-03
127GO:0045036: protein targeting to chloroplast8.55E-03
128GO:0000103: sulfate assimilation8.55E-03
129GO:0071365: cellular response to auxin stimulus1.04E-02
130GO:0006820: anion transport1.04E-02
131GO:0006810: transport1.06E-02
132GO:0006094: gluconeogenesis1.14E-02
133GO:0010102: lateral root morphogenesis1.14E-02
134GO:0006108: malate metabolic process1.14E-02
135GO:0007034: vacuolar transport1.24E-02
136GO:0002237: response to molecule of bacterial origin1.24E-02
137GO:0009933: meristem structural organization1.24E-02
138GO:0009969: xyloglucan biosynthetic process1.34E-02
139GO:0007031: peroxisome organization1.34E-02
140GO:0090351: seedling development1.34E-02
141GO:0006486: protein glycosylation1.43E-02
142GO:0009116: nucleoside metabolic process1.56E-02
143GO:0051017: actin filament bundle assembly1.56E-02
144GO:0006406: mRNA export from nucleus1.56E-02
145GO:0008299: isoprenoid biosynthetic process1.68E-02
146GO:0010431: seed maturation1.79E-02
147GO:0061077: chaperone-mediated protein folding1.79E-02
148GO:0003333: amino acid transmembrane transport1.79E-02
149GO:0035428: hexose transmembrane transport1.91E-02
150GO:0006012: galactose metabolic process2.03E-02
151GO:0045454: cell redox homeostasis2.09E-02
152GO:0010584: pollen exine formation2.16E-02
153GO:0009306: protein secretion2.16E-02
154GO:0042147: retrograde transport, endosome to Golgi2.29E-02
155GO:0000413: protein peptidyl-prolyl isomerization2.42E-02
156GO:0010051: xylem and phloem pattern formation2.42E-02
157GO:0010118: stomatal movement2.42E-02
158GO:0034220: ion transmembrane transport2.42E-02
159GO:0009793: embryo development ending in seed dormancy2.53E-02
160GO:0046323: glucose import2.55E-02
161GO:0008360: regulation of cell shape2.55E-02
162GO:0010154: fruit development2.55E-02
163GO:0006662: glycerol ether metabolic process2.55E-02
164GO:0061025: membrane fusion2.68E-02
165GO:0009646: response to absence of light2.68E-02
166GO:0009408: response to heat2.72E-02
167GO:0008654: phospholipid biosynthetic process2.82E-02
168GO:0048825: cotyledon development2.82E-02
169GO:0006623: protein targeting to vacuole2.82E-02
170GO:0010193: response to ozone2.96E-02
171GO:0016132: brassinosteroid biosynthetic process2.96E-02
172GO:0080156: mitochondrial mRNA modification2.96E-02
173GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.96E-02
174GO:0009630: gravitropism3.10E-02
175GO:0010090: trichome morphogenesis3.25E-02
176GO:0010252: auxin homeostasis3.39E-02
177GO:0007623: circadian rhythm3.52E-02
178GO:0010286: heat acclimation3.55E-02
179GO:0000910: cytokinesis3.70E-02
180GO:0016579: protein deubiquitination3.70E-02
181GO:0009615: response to virus3.85E-02
182GO:0016126: sterol biosynthetic process3.85E-02
183GO:0006888: ER to Golgi vesicle-mediated transport4.32E-02
184GO:0015995: chlorophyll biosynthetic process4.32E-02
185GO:0008219: cell death4.65E-02
186GO:0048767: root hair elongation4.81E-02
187GO:0010311: lateral root formation4.81E-02
188GO:0009735: response to cytokinin4.93E-02
RankGO TermAdjusted P value
1GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
4GO:0003837: beta-ureidopropionase activity0.00E+00
5GO:0032441: pheophorbide a oxygenase activity0.00E+00
6GO:0050152: omega-amidase activity0.00E+00
7GO:0004151: dihydroorotase activity0.00E+00
8GO:0008777: acetylornithine deacetylase activity0.00E+00
9GO:0004298: threonine-type endopeptidase activity9.71E-40
10GO:0008233: peptidase activity5.12E-21
11GO:0036402: proteasome-activating ATPase activity1.03E-08
12GO:0017025: TBP-class protein binding2.34E-06
13GO:0052692: raffinose alpha-galactosidase activity1.44E-05
14GO:0004557: alpha-galactosidase activity1.44E-05
15GO:0008137: NADH dehydrogenase (ubiquinone) activity2.69E-05
16GO:0004576: oligosaccharyl transferase activity5.77E-05
17GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity9.10E-05
18GO:0050897: cobalt ion binding1.20E-04
19GO:0016887: ATPase activity2.30E-04
20GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.87E-04
21GO:0102293: pheophytinase b activity2.97E-04
22GO:0030941: chloroplast targeting sequence binding2.97E-04
23GO:0000248: C-5 sterol desaturase activity2.97E-04
24GO:0016229: steroid dehydrogenase activity2.97E-04
25GO:0004347: glucose-6-phosphate isomerase activity2.97E-04
26GO:0050200: plasmalogen synthase activity2.97E-04
27GO:0004452: isopentenyl-diphosphate delta-isomerase activity2.97E-04
28GO:0005090: Sar guanyl-nucleotide exchange factor activity2.97E-04
29GO:0070401: NADP+ binding2.97E-04
30GO:0030544: Hsp70 protein binding2.97E-04
31GO:0047746: chlorophyllase activity6.50E-04
32GO:1990585: hydroxyproline O-arabinosyltransferase activity6.50E-04
33GO:0004826: phenylalanine-tRNA ligase activity6.50E-04
34GO:0005366: myo-inositol:proton symporter activity6.50E-04
35GO:0008517: folic acid transporter activity6.50E-04
36GO:0046961: proton-transporting ATPase activity, rotational mechanism7.02E-04
37GO:0005457: GDP-fucose transmembrane transporter activity1.05E-03
38GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.05E-03
39GO:0010277: chlorophyllide a oxygenase [overall] activity1.05E-03
40GO:0032403: protein complex binding1.05E-03
41GO:0017089: glycolipid transporter activity1.51E-03
42GO:0003999: adenine phosphoribosyltransferase activity1.51E-03
43GO:0005460: UDP-glucose transmembrane transporter activity1.51E-03
44GO:0051537: 2 iron, 2 sulfur cluster binding1.75E-03
45GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.92E-03
46GO:0015368: calcium:cation antiporter activity2.02E-03
47GO:0010011: auxin binding2.02E-03
48GO:0051861: glycolipid binding2.02E-03
49GO:0015369: calcium:proton antiporter activity2.02E-03
50GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.02E-03
51GO:0050302: indole-3-acetaldehyde oxidase activity2.02E-03
52GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.02E-03
53GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.02E-03
54GO:0005459: UDP-galactose transmembrane transporter activity2.58E-03
55GO:0008198: ferrous iron binding2.58E-03
56GO:0005496: steroid binding2.58E-03
57GO:0080122: AMP transmembrane transporter activity2.58E-03
58GO:0004040: amidase activity2.58E-03
59GO:0031177: phosphopantetheine binding3.19E-03
60GO:0051117: ATPase binding3.19E-03
61GO:0051020: GTPase binding3.84E-03
62GO:0015217: ADP transmembrane transporter activity3.84E-03
63GO:0000035: acyl binding3.84E-03
64GO:0102391: decanoate--CoA ligase activity3.84E-03
65GO:0005347: ATP transmembrane transporter activity3.84E-03
66GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.89E-03
67GO:0004467: long-chain fatty acid-CoA ligase activity4.53E-03
68GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.53E-03
69GO:0005338: nucleotide-sugar transmembrane transporter activity4.53E-03
70GO:0008121: ubiquinol-cytochrome-c reductase activity4.53E-03
71GO:0008143: poly(A) binding4.53E-03
72GO:0008320: protein transmembrane transporter activity4.53E-03
73GO:0015288: porin activity5.26E-03
74GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process5.26E-03
75GO:0004034: aldose 1-epimerase activity5.26E-03
76GO:0004033: aldo-keto reductase (NADP) activity5.26E-03
77GO:0015491: cation:cation antiporter activity5.26E-03
78GO:0009931: calcium-dependent protein serine/threonine kinase activity5.52E-03
79GO:0004683: calmodulin-dependent protein kinase activity5.82E-03
80GO:0015078: hydrogen ion transmembrane transporter activity6.03E-03
81GO:0008308: voltage-gated anion channel activity6.03E-03
82GO:0008417: fucosyltransferase activity6.83E-03
83GO:0000989: transcription factor activity, transcription factor binding6.83E-03
84GO:0016844: strictosidine synthase activity7.67E-03
85GO:0045309: protein phosphorylated amino acid binding7.67E-03
86GO:0005507: copper ion binding8.58E-03
87GO:0008559: xenobiotic-transporting ATPase activity9.46E-03
88GO:0019904: protein domain specific binding9.46E-03
89GO:0004129: cytochrome-c oxidase activity9.46E-03
90GO:0008794: arsenate reductase (glutaredoxin) activity9.46E-03
91GO:0042802: identical protein binding9.86E-03
92GO:0000049: tRNA binding1.04E-02
93GO:0031072: heat shock protein binding1.14E-02
94GO:0043621: protein self-association1.14E-02
95GO:0008266: poly(U) RNA binding1.24E-02
96GO:0004175: endopeptidase activity1.24E-02
97GO:0016788: hydrolase activity, acting on ester bonds1.30E-02
98GO:0051536: iron-sulfur cluster binding1.56E-02
99GO:0043130: ubiquitin binding1.56E-02
100GO:0005528: FK506 binding1.56E-02
101GO:0015171: amino acid transmembrane transporter activity1.58E-02
102GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.79E-02
103GO:0004540: ribonuclease activity1.79E-02
104GO:0003735: structural constituent of ribosome1.91E-02
105GO:0022857: transmembrane transporter activity1.92E-02
106GO:0015035: protein disulfide oxidoreductase activity2.10E-02
107GO:0016746: transferase activity, transferring acyl groups2.10E-02
108GO:0008514: organic anion transmembrane transporter activity2.16E-02
109GO:0047134: protein-disulfide reductase activity2.29E-02
110GO:0016491: oxidoreductase activity2.52E-02
111GO:0019843: rRNA binding2.55E-02
112GO:0004791: thioredoxin-disulfide reductase activity2.68E-02
113GO:0005355: glucose transmembrane transporter activity2.68E-02
114GO:0004872: receptor activity2.82E-02
115GO:0004843: thiol-dependent ubiquitin-specific protease activity2.96E-02
116GO:0009055: electron carrier activity2.97E-02
117GO:0005516: calmodulin binding3.03E-02
118GO:0051015: actin filament binding3.25E-02
119GO:0005351: sugar:proton symporter activity3.44E-02
120GO:0008237: metallopeptidase activity3.55E-02
121GO:0016597: amino acid binding3.70E-02
122GO:0051213: dioxygenase activity3.85E-02
123GO:0015250: water channel activity3.85E-02
124GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.46E-02
125GO:0005096: GTPase activator activity4.81E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
3GO:0000502: proteasome complex5.43E-53
4GO:0005839: proteasome core complex9.71E-40
5GO:0019773: proteasome core complex, alpha-subunit complex1.20E-19
6GO:0005829: cytosol3.27E-13
7GO:0005774: vacuolar membrane1.56E-11
8GO:0005773: vacuole9.92E-11
9GO:0031595: nuclear proteasome complex2.47E-10
10GO:0031597: cytosolic proteasome complex2.27E-08
11GO:0005783: endoplasmic reticulum2.26E-07
12GO:0005747: mitochondrial respiratory chain complex I2.51E-07
13GO:0008540: proteasome regulatory particle, base subcomplex3.35E-07
14GO:0008541: proteasome regulatory particle, lid subcomplex7.07E-07
15GO:0022626: cytosolic ribosome9.52E-07
16GO:0005753: mitochondrial proton-transporting ATP synthase complex2.34E-06
17GO:0005838: proteasome regulatory particle1.44E-05
18GO:0033180: proton-transporting V-type ATPase, V1 domain3.21E-05
19GO:0016020: membrane4.17E-05
20GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)5.77E-05
21GO:0008250: oligosaccharyltransferase complex9.10E-05
22GO:0005737: cytoplasm1.46E-04
23GO:0005759: mitochondrial matrix2.18E-04
24GO:0005794: Golgi apparatus2.72E-04
25GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain6.50E-04
26GO:0000325: plant-type vacuole1.03E-03
27GO:0046861: glyoxysomal membrane1.05E-03
28GO:0045271: respiratory chain complex I1.55E-03
29GO:0070469: respiratory chain1.55E-03
30GO:0005730: nucleolus1.63E-03
31GO:0033179: proton-transporting V-type ATPase, V0 domain2.02E-03
32GO:0005746: mitochondrial respiratory chain2.58E-03
33GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.19E-03
34GO:0005771: multivesicular body3.19E-03
35GO:0030904: retromer complex3.19E-03
36GO:0031209: SCAR complex3.19E-03
37GO:0005801: cis-Golgi network3.84E-03
38GO:0005789: endoplasmic reticulum membrane3.90E-03
39GO:0032580: Golgi cisterna membrane4.15E-03
40GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane4.53E-03
41GO:0031359: integral component of chloroplast outer membrane4.53E-03
42GO:0005618: cell wall4.80E-03
43GO:0005788: endoplasmic reticulum lumen5.22E-03
44GO:0046930: pore complex6.03E-03
45GO:0009514: glyoxysome6.03E-03
46GO:0005779: integral component of peroxisomal membrane6.03E-03
47GO:0005763: mitochondrial small ribosomal subunit6.83E-03
48GO:0009705: plant-type vacuole membrane7.26E-03
49GO:0005750: mitochondrial respiratory chain complex III1.24E-02
50GO:0031966: mitochondrial membrane1.33E-02
51GO:0030176: integral component of endoplasmic reticulum membrane1.34E-02
52GO:0009507: chloroplast1.43E-02
53GO:0005758: mitochondrial intermembrane space1.56E-02
54GO:0005886: plasma membrane1.79E-02
55GO:0015935: small ribosomal subunit1.79E-02
56GO:0005741: mitochondrial outer membrane1.79E-02
57GO:0005777: peroxisome2.03E-02
58GO:0009506: plasmodesma2.19E-02
59GO:0009536: plastid2.23E-02
60GO:0005739: mitochondrion2.59E-02
61GO:0071944: cell periphery3.25E-02
62GO:0005778: peroxisomal membrane3.55E-02
63GO:0009941: chloroplast envelope4.11E-02
64GO:0022627: cytosolic small ribosomal subunit4.64E-02
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Gene type



Gene DE type