co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G35480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0009304: tRNA transcription	0.00E+00
3	GO:0046294: formaldehyde catabolic process	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0009249: protein lipoylation	0.00E+00
9	GO:0009098: leucine biosynthetic process	4.13E-06
10	GO:0009658: chloroplast organization	9.08E-05
11	GO:0019761: glucosinolate biosynthetic process	1.13E-04
12	GO:1902265: abscisic acid homeostasis	1.52E-04
13	GO:0072387: flavin adenine dinucleotide metabolic process	1.52E-04
14	GO:0042371: vitamin K biosynthetic process	1.52E-04
15	GO:0071454: cellular response to anoxia	1.52E-04
16	GO:0071461: cellular response to redox state	1.52E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.47E-04
18	GO:0010343: singlet oxygen-mediated programmed cell death	3.47E-04
19	GO:1901529: positive regulation of anion channel activity	3.47E-04
20	GO:2000030: regulation of response to red or far red light	3.47E-04
21	GO:0080005: photosystem stoichiometry adjustment	3.47E-04
22	GO:0010617: circadian regulation of calcium ion oscillation	3.47E-04
23	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.47E-04
24	GO:0099402: plant organ development	3.47E-04
25	GO:0080153: negative regulation of reductive pentose-phosphate cycle	3.47E-04
26	GO:0009767: photosynthetic electron transport chain	3.61E-04
27	GO:0010207: photosystem II assembly	4.07E-04
28	GO:0031022: nuclear migration along microfilament	5.68E-04
29	GO:1902448: positive regulation of shade avoidance	5.68E-04
30	GO:1901672: positive regulation of systemic acquired resistance	5.68E-04
31	GO:0009150: purine ribonucleotide metabolic process	5.68E-04
32	GO:0006696: ergosterol biosynthetic process	5.68E-04
33	GO:0090307: mitotic spindle assembly	8.13E-04
34	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	8.13E-04
35	GO:0033014: tetrapyrrole biosynthetic process	8.13E-04
36	GO:1901332: negative regulation of lateral root development	8.13E-04
37	GO:2001141: regulation of RNA biosynthetic process	8.13E-04
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.13E-04
39	GO:1902358: sulfate transmembrane transport	8.13E-04
40	GO:0016117: carotenoid biosynthetic process	9.45E-04
41	GO:0031122: cytoplasmic microtubule organization	1.08E-03
42	GO:1902347: response to strigolactone	1.08E-03
43	GO:0009902: chloroplast relocation	1.08E-03
44	GO:0016120: carotene biosynthetic process	1.36E-03
45	GO:0010117: photoprotection	1.36E-03
46	GO:0046283: anthocyanin-containing compound metabolic process	1.36E-03
47	GO:0045038: protein import into chloroplast thylakoid membrane	1.36E-03
48	GO:0035434: copper ion transmembrane transport	1.36E-03
49	GO:0009107: lipoate biosynthetic process	1.36E-03
50	GO:1901371: regulation of leaf morphogenesis	1.67E-03
51	GO:0060918: auxin transport	1.67E-03
52	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.67E-03
53	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.01E-03
54	GO:0034389: lipid particle organization	2.01E-03
55	GO:0009903: chloroplast avoidance movement	2.01E-03
56	GO:0010019: chloroplast-nucleus signaling pathway	2.01E-03
57	GO:0010310: regulation of hydrogen peroxide metabolic process	2.01E-03
58	GO:0015995: chlorophyll biosynthetic process	2.26E-03
59	GO:1900056: negative regulation of leaf senescence	2.36E-03
60	GO:0051510: regulation of unidimensional cell growth	2.36E-03
61	GO:0010038: response to metal ion	2.36E-03
62	GO:0048564: photosystem I assembly	2.73E-03
63	GO:0010928: regulation of auxin mediated signaling pathway	2.73E-03
64	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.73E-03
65	GO:0009704: de-etiolation	2.73E-03
66	GO:0071482: cellular response to light stimulus	3.12E-03
67	GO:0022900: electron transport chain	3.12E-03
68	GO:0032544: plastid translation	3.12E-03
69	GO:0009637: response to blue light	3.15E-03
70	GO:0019432: triglyceride biosynthetic process	3.53E-03
71	GO:0006783: heme biosynthetic process	3.53E-03
72	GO:0009638: phototropism	3.96E-03
73	GO:0006779: porphyrin-containing compound biosynthetic process	3.96E-03
74	GO:0010380: regulation of chlorophyll biosynthetic process	3.96E-03
75	GO:1900426: positive regulation of defense response to bacterium	3.96E-03
76	GO:0009744: response to sucrose	4.05E-03
77	GO:0009644: response to high light intensity	4.38E-03
78	GO:0051555: flavonol biosynthetic process	4.40E-03
79	GO:0043085: positive regulation of catalytic activity	4.86E-03
80	GO:0006352: DNA-templated transcription, initiation	4.86E-03
81	GO:0009684: indoleacetic acid biosynthetic process	4.86E-03
82	GO:0006790: sulfur compound metabolic process	5.34E-03
83	GO:0045037: protein import into chloroplast stroma	5.34E-03
84	GO:0009785: blue light signaling pathway	5.83E-03
85	GO:0030048: actin filament-based movement	5.83E-03
86	GO:0010075: regulation of meristem growth	5.83E-03
87	GO:0009725: response to hormone	5.83E-03
88	GO:0034605: cellular response to heat	6.33E-03
89	GO:0019253: reductive pentose-phosphate cycle	6.33E-03
90	GO:0000162: tryptophan biosynthetic process	7.40E-03
91	GO:0006071: glycerol metabolic process	7.40E-03
92	GO:2000377: regulation of reactive oxygen species metabolic process	7.95E-03
93	GO:0007017: microtubule-based process	8.51E-03
94	GO:0006825: copper ion transport	8.51E-03
95	GO:0098542: defense response to other organism	9.10E-03
96	GO:0016226: iron-sulfur cluster assembly	9.69E-03
97	GO:0070417: cellular response to cold	1.16E-02
98	GO:0010118: stomatal movement	1.22E-02
99	GO:0009958: positive gravitropism	1.29E-02
100	GO:0010197: polar nucleus fusion	1.29E-02
101	GO:0042752: regulation of circadian rhythm	1.36E-02
102	GO:0009646: response to absence of light	1.36E-02
103	GO:0009851: auxin biosynthetic process	1.42E-02
104	GO:0007264: small GTPase mediated signal transduction	1.57E-02
105	GO:0030163: protein catabolic process	1.64E-02
106	GO:0019760: glucosinolate metabolic process	1.71E-02
107	GO:0016126: sterol biosynthetic process	1.94E-02
108	GO:0006810: transport	2.00E-02
109	GO:0010029: regulation of seed germination	2.02E-02
110	GO:0006508: proteolysis	2.06E-02
111	GO:0018298: protein-chromophore linkage	2.34E-02
112	GO:0006811: ion transport	2.51E-02
113	GO:0009407: toxin catabolic process	2.51E-02
114	GO:0010218: response to far red light	2.51E-02
115	GO:0010043: response to zinc ion	2.60E-02
116	GO:0007568: aging	2.60E-02
117	GO:0009910: negative regulation of flower development	2.60E-02
118	GO:0055114: oxidation-reduction process	3.09E-02
119	GO:0009640: photomorphogenesis	3.32E-02
120	GO:0010114: response to red light	3.32E-02
121	GO:0009636: response to toxic substance	3.61E-02
122	GO:0006260: DNA replication	3.81E-02
123	GO:0006364: rRNA processing	4.11E-02
124	GO:0051603: proteolysis involved in cellular protein catabolic process	4.21E-02
125	GO:0006417: regulation of translation	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
7	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
8	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.13E-06
9	GO:0004848: ureidoglycolate hydrolase activity	4.23E-06
10	GO:0019899: enzyme binding	8.40E-05
11	GO:0048038: quinone binding	1.02E-04
12	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.52E-04
13	GO:0004325: ferrochelatase activity	1.52E-04
14	GO:0051996: squalene synthase activity	1.52E-04
15	GO:0046906: tetrapyrrole binding	1.52E-04
16	GO:0071949: FAD binding	1.66E-04
17	GO:0004046: aminoacylase activity	3.47E-04
18	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.47E-04
19	GO:0017118: lipoyltransferase activity	3.47E-04
20	GO:0016415: octanoyltransferase activity	3.47E-04
21	GO:0008430: selenium binding	5.68E-04
22	GO:0004180: carboxypeptidase activity	5.68E-04
23	GO:0010277: chlorophyllide a oxygenase [overall] activity	5.68E-04
24	GO:0032947: protein complex scaffold	5.68E-04
25	GO:0019003: GDP binding	5.68E-04
26	GO:0003861: 3-isopropylmalate dehydratase activity	5.68E-04
27	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.68E-04
28	GO:0004176: ATP-dependent peptidase activity	6.79E-04
29	GO:0000254: C-4 methylsterol oxidase activity	8.13E-04
30	GO:0016851: magnesium chelatase activity	8.13E-04
31	GO:0009882: blue light photoreceptor activity	8.13E-04
32	GO:0047627: adenylylsulfatase activity	8.13E-04
33	GO:0016987: sigma factor activity	1.08E-03
34	GO:0043015: gamma-tubulin binding	1.08E-03
35	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.08E-03
36	GO:0001053: plastid sigma factor activity	1.08E-03
37	GO:0004834: tryptophan synthase activity	1.08E-03
38	GO:0016836: hydro-lyase activity	1.08E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.08E-03
40	GO:0051011: microtubule minus-end binding	1.36E-03
41	GO:0000293: ferric-chelate reductase activity	1.67E-03
42	GO:0008237: metallopeptidase activity	1.71E-03
43	GO:0015631: tubulin binding	2.01E-03
44	GO:0004144: diacylglycerol O-acyltransferase activity	2.01E-03
45	GO:0004222: metalloendopeptidase activity	2.75E-03
46	GO:0005506: iron ion binding	2.86E-03
47	GO:0008271: secondary active sulfate transmembrane transporter activity	3.12E-03
48	GO:0005375: copper ion transmembrane transporter activity	3.12E-03
49	GO:0051537: 2 iron, 2 sulfur cluster binding	4.38E-03
50	GO:0001054: RNA polymerase I activity	4.86E-03
51	GO:0051287: NAD binding	4.90E-03
52	GO:0001056: RNA polymerase III activity	5.34E-03
53	GO:0015116: sulfate transmembrane transporter activity	5.34E-03
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	5.45E-03
55	GO:0031072: heat shock protein binding	5.83E-03
56	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	6.65E-03
57	GO:0003887: DNA-directed DNA polymerase activity	7.40E-03
58	GO:0051536: iron-sulfur cluster binding	7.95E-03
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.99E-03
60	GO:0008080: N-acetyltransferase activity	1.29E-02
61	GO:0004872: receptor activity	1.42E-02
62	GO:0008194: UDP-glycosyltransferase activity	1.51E-02
63	GO:0016491: oxidoreductase activity	1.70E-02
64	GO:0042802: identical protein binding	1.71E-02
65	GO:0005200: structural constituent of cytoskeleton	1.79E-02
66	GO:0000287: magnesium ion binding	2.05E-02
67	GO:0016788: hydrolase activity, acting on ester bonds	2.13E-02
68	GO:0008236: serine-type peptidase activity	2.26E-02
69	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
70	GO:0004364: glutathione transferase activity	3.23E-02
71	GO:0004185: serine-type carboxypeptidase activity	3.32E-02
72	GO:0005198: structural molecule activity	3.61E-02
73	GO:0015293: symporter activity	3.61E-02
74	GO:0003777: microtubule motor activity	4.42E-02
75	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.95E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	4.44E-21
3	GO:0009535: chloroplast thylakoid membrane	1.07E-12
4	GO:0009570: chloroplast stroma	1.48E-04
5	GO:0031972: chloroplast intermembrane space	1.52E-04
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.66E-04
7	GO:0009536: plastid	2.78E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	3.47E-04
9	GO:0008274: gamma-tubulin ring complex	3.47E-04
10	GO:0016605: PML body	5.68E-04
11	GO:0000923: equatorial microtubule organizing center	8.13E-04
12	GO:0031969: chloroplast membrane	8.97E-04
13	GO:0030286: dynein complex	1.08E-03
14	GO:0055035: plastid thylakoid membrane	1.36E-03
15	GO:0005623: cell	1.48E-03
16	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.12E-03
17	GO:0005811: lipid particle	3.12E-03
18	GO:0005736: DNA-directed RNA polymerase I complex	3.53E-03
19	GO:0000922: spindle pole	3.53E-03
20	GO:0016604: nuclear body	3.96E-03
21	GO:0005666: DNA-directed RNA polymerase III complex	3.96E-03
22	GO:0009534: chloroplast thylakoid	5.13E-03
23	GO:0043234: protein complex	7.40E-03
24	GO:0005875: microtubule associated complex	7.40E-03
25	GO:0009706: chloroplast inner membrane	7.76E-03
26	GO:0042651: thylakoid membrane	8.51E-03
27	GO:0015935: small ribosomal subunit	9.10E-03
28	GO:0009543: chloroplast thylakoid lumen	9.73E-03
29	GO:0009707: chloroplast outer membrane	2.34E-02
30	GO:0005819: spindle	2.95E-02
31	GO:0005622: intracellular	3.43E-02
32	GO:0031966: mitochondrial membrane	3.91E-02
33	GO:0009941: chloroplast envelope	4.17E-02