GO Enrichment Analysis of Co-expressed Genes with
AT5G28840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018293: protein-FAD linkage | 0.00E+00 |
| 2 | GO:0034553: mitochondrial respiratory chain complex II assembly | 0.00E+00 |
| 3 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 4 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 5 | GO:0045747: positive regulation of Notch signaling pathway | 0.00E+00 |
| 6 | GO:0055114: oxidation-reduction process | 4.32E-08 |
| 7 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 2.70E-07 |
| 8 | GO:0006555: methionine metabolic process | 2.72E-05 |
| 9 | GO:0019509: L-methionine salvage from methylthioadenosine | 3.84E-05 |
| 10 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 6.75E-05 |
| 11 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 1.12E-04 |
| 12 | GO:0006835: dicarboxylic acid transport | 1.12E-04 |
| 13 | GO:1902265: abscisic acid homeostasis | 1.12E-04 |
| 14 | GO:0031468: nuclear envelope reassembly | 1.12E-04 |
| 15 | GO:0009853: photorespiration | 1.97E-04 |
| 16 | GO:0019441: tryptophan catabolic process to kynurenine | 2.61E-04 |
| 17 | GO:0043100: pyrimidine nucleobase salvage | 2.61E-04 |
| 18 | GO:2000071: regulation of defense response by callose deposition | 2.61E-04 |
| 19 | GO:0015940: pantothenate biosynthetic process | 4.32E-04 |
| 20 | GO:0071492: cellular response to UV-A | 4.32E-04 |
| 21 | GO:0031022: nuclear migration along microfilament | 4.32E-04 |
| 22 | GO:0009399: nitrogen fixation | 6.19E-04 |
| 23 | GO:0009963: positive regulation of flavonoid biosynthetic process | 6.19E-04 |
| 24 | GO:0009647: skotomorphogenesis | 6.19E-04 |
| 25 | GO:0009902: chloroplast relocation | 8.23E-04 |
| 26 | GO:0034613: cellular protein localization | 8.23E-04 |
| 27 | GO:0006542: glutamine biosynthetic process | 8.23E-04 |
| 28 | GO:0006646: phosphatidylethanolamine biosynthetic process | 8.23E-04 |
| 29 | GO:0070534: protein K63-linked ubiquitination | 8.23E-04 |
| 30 | GO:0015743: malate transport | 8.23E-04 |
| 31 | GO:0071486: cellular response to high light intensity | 8.23E-04 |
| 32 | GO:0009765: photosynthesis, light harvesting | 8.23E-04 |
| 33 | GO:0006221: pyrimidine nucleotide biosynthetic process | 8.23E-04 |
| 34 | GO:0009649: entrainment of circadian clock | 8.23E-04 |
| 35 | GO:0046283: anthocyanin-containing compound metabolic process | 1.04E-03 |
| 36 | GO:0010236: plastoquinone biosynthetic process | 1.04E-03 |
| 37 | GO:0016120: carotene biosynthetic process | 1.04E-03 |
| 38 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 1.27E-03 |
| 39 | GO:0006301: postreplication repair | 1.27E-03 |
| 40 | GO:0007035: vacuolar acidification | 1.27E-03 |
| 41 | GO:0006796: phosphate-containing compound metabolic process | 1.27E-03 |
| 42 | GO:0009903: chloroplast avoidance movement | 1.52E-03 |
| 43 | GO:1901001: negative regulation of response to salt stress | 1.52E-03 |
| 44 | GO:0050790: regulation of catalytic activity | 1.78E-03 |
| 45 | GO:0006955: immune response | 1.78E-03 |
| 46 | GO:0009396: folic acid-containing compound biosynthetic process | 1.78E-03 |
| 47 | GO:0009231: riboflavin biosynthetic process | 2.06E-03 |
| 48 | GO:0030091: protein repair | 2.06E-03 |
| 49 | GO:0006970: response to osmotic stress | 2.41E-03 |
| 50 | GO:0046916: cellular transition metal ion homeostasis | 2.66E-03 |
| 51 | GO:0051453: regulation of intracellular pH | 2.97E-03 |
| 52 | GO:0035999: tetrahydrofolate interconversion | 2.97E-03 |
| 53 | GO:0045036: protein targeting to chloroplast | 3.30E-03 |
| 54 | GO:0009641: shade avoidance | 3.30E-03 |
| 55 | GO:0009682: induced systemic resistance | 3.65E-03 |
| 56 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.72E-03 |
| 57 | GO:0050826: response to freezing | 4.36E-03 |
| 58 | GO:0009718: anthocyanin-containing compound biosynthetic process | 4.36E-03 |
| 59 | GO:0009691: cytokinin biosynthetic process | 4.36E-03 |
| 60 | GO:0030048: actin filament-based movement | 4.36E-03 |
| 61 | GO:0016042: lipid catabolic process | 4.54E-03 |
| 62 | GO:0007030: Golgi organization | 5.13E-03 |
| 63 | GO:0008299: isoprenoid biosynthetic process | 6.35E-03 |
| 64 | GO:0019915: lipid storage | 6.78E-03 |
| 65 | GO:0061077: chaperone-mediated protein folding | 6.78E-03 |
| 66 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 7.22E-03 |
| 67 | GO:0006012: galactose metabolic process | 7.67E-03 |
| 68 | GO:0009693: ethylene biosynthetic process | 7.67E-03 |
| 69 | GO:0016117: carotenoid biosynthetic process | 8.60E-03 |
| 70 | GO:0080022: primary root development | 9.08E-03 |
| 71 | GO:0010118: stomatal movement | 9.08E-03 |
| 72 | GO:0015991: ATP hydrolysis coupled proton transport | 9.08E-03 |
| 73 | GO:0006520: cellular amino acid metabolic process | 9.57E-03 |
| 74 | GO:0061025: membrane fusion | 1.01E-02 |
| 75 | GO:0006814: sodium ion transport | 1.01E-02 |
| 76 | GO:0008654: phospholipid biosynthetic process | 1.06E-02 |
| 77 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.11E-02 |
| 78 | GO:0002229: defense response to oomycetes | 1.11E-02 |
| 79 | GO:0009651: response to salt stress | 1.15E-02 |
| 80 | GO:1901657: glycosyl compound metabolic process | 1.22E-02 |
| 81 | GO:0006464: cellular protein modification process | 1.27E-02 |
| 82 | GO:0016126: sterol biosynthetic process | 1.44E-02 |
| 83 | GO:0010029: regulation of seed germination | 1.50E-02 |
| 84 | GO:0042128: nitrate assimilation | 1.56E-02 |
| 85 | GO:0048573: photoperiodism, flowering | 1.62E-02 |
| 86 | GO:0010411: xyloglucan metabolic process | 1.62E-02 |
| 87 | GO:0009407: toxin catabolic process | 1.86E-02 |
| 88 | GO:0010043: response to zinc ion | 1.93E-02 |
| 89 | GO:0007568: aging | 1.93E-02 |
| 90 | GO:0048527: lateral root development | 1.93E-02 |
| 91 | GO:0010119: regulation of stomatal movement | 1.93E-02 |
| 92 | GO:0009637: response to blue light | 2.06E-02 |
| 93 | GO:0009867: jasmonic acid mediated signaling pathway | 2.06E-02 |
| 94 | GO:0006099: tricarboxylic acid cycle | 2.12E-02 |
| 95 | GO:0030001: metal ion transport | 2.25E-02 |
| 96 | GO:0009640: photomorphogenesis | 2.46E-02 |
| 97 | GO:0009636: response to toxic substance | 2.67E-02 |
| 98 | GO:0031347: regulation of defense response | 2.82E-02 |
| 99 | GO:0042538: hyperosmotic salinity response | 2.89E-02 |
| 100 | GO:0009585: red, far-red light phototransduction | 3.04E-02 |
| 101 | GO:0010224: response to UV-B | 3.12E-02 |
| 102 | GO:0009620: response to fungus | 3.67E-02 |
| 103 | GO:0005975: carbohydrate metabolic process | 4.00E-02 |
| 104 | GO:0009738: abscisic acid-activated signaling pathway | 4.29E-02 |
| 105 | GO:0035556: intracellular signal transduction | 4.67E-02 |
| 106 | GO:0009058: biosynthetic process | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 2 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 3 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 4 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0017153: sodium:dicarboxylate symporter activity | 0.00E+00 |
| 6 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 7 | GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity | 0.00E+00 |
| 8 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 9 | GO:0015391: nucleobase:cation symporter activity | 0.00E+00 |
| 10 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 2.44E-06 |
| 11 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 5.76E-06 |
| 12 | GO:0004307: ethanolaminephosphotransferase activity | 1.12E-04 |
| 13 | GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity | 1.12E-04 |
| 14 | GO:0046480: galactolipid galactosyltransferase activity | 1.12E-04 |
| 15 | GO:0080079: cellobiose glucosidase activity | 1.12E-04 |
| 16 | GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | 1.12E-04 |
| 17 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.12E-04 |
| 18 | GO:0016780: phosphotransferase activity, for other substituted phosphate groups | 1.12E-04 |
| 19 | GO:0043425: bHLH transcription factor binding | 2.61E-04 |
| 20 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 2.61E-04 |
| 21 | GO:0050347: trans-octaprenyltranstransferase activity | 2.61E-04 |
| 22 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 2.61E-04 |
| 23 | GO:0030572: phosphatidyltransferase activity | 2.61E-04 |
| 24 | GO:0004046: aminoacylase activity | 2.61E-04 |
| 25 | GO:0004142: diacylglycerol cholinephosphotransferase activity | 2.61E-04 |
| 26 | GO:0004061: arylformamidase activity | 2.61E-04 |
| 27 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 4.32E-04 |
| 28 | GO:0004848: ureidoglycolate hydrolase activity | 4.32E-04 |
| 29 | GO:0003935: GTP cyclohydrolase II activity | 4.32E-04 |
| 30 | GO:0016491: oxidoreductase activity | 5.51E-04 |
| 31 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 6.19E-04 |
| 32 | GO:0000254: C-4 methylsterol oxidase activity | 6.19E-04 |
| 33 | GO:0016853: isomerase activity | 7.87E-04 |
| 34 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 8.98E-04 |
| 35 | GO:0004197: cysteine-type endopeptidase activity | 9.56E-04 |
| 36 | GO:0004356: glutamate-ammonia ligase activity | 1.04E-03 |
| 37 | GO:0008177: succinate dehydrogenase (ubiquinone) activity | 1.04E-03 |
| 38 | GO:0051117: ATPase binding | 1.27E-03 |
| 39 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 1.27E-03 |
| 40 | GO:0070300: phosphatidic acid binding | 1.52E-03 |
| 41 | GO:0004427: inorganic diphosphatase activity | 1.78E-03 |
| 42 | GO:0015140: malate transmembrane transporter activity | 1.78E-03 |
| 43 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 2.06E-03 |
| 44 | GO:0004034: aldose 1-epimerase activity | 2.06E-03 |
| 45 | GO:0016788: hydrolase activity, acting on ester bonds | 2.24E-03 |
| 46 | GO:0015078: hydrogen ion transmembrane transporter activity | 2.35E-03 |
| 47 | GO:0046914: transition metal ion binding | 2.35E-03 |
| 48 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.89E-03 |
| 49 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.11E-03 |
| 50 | GO:0052689: carboxylic ester hydrolase activity | 3.26E-03 |
| 51 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 3.65E-03 |
| 52 | GO:0008234: cysteine-type peptidase activity | 3.97E-03 |
| 53 | GO:0008378: galactosyltransferase activity | 4.00E-03 |
| 54 | GO:0004089: carbonate dehydratase activity | 4.36E-03 |
| 55 | GO:0031072: heat shock protein binding | 4.36E-03 |
| 56 | GO:0043130: ubiquitin binding | 5.93E-03 |
| 57 | GO:0005528: FK506 binding | 5.93E-03 |
| 58 | GO:0048038: quinone binding | 1.11E-02 |
| 59 | GO:0008483: transaminase activity | 1.33E-02 |
| 60 | GO:0016413: O-acetyltransferase activity | 1.38E-02 |
| 61 | GO:0016168: chlorophyll binding | 1.50E-02 |
| 62 | GO:0046872: metal ion binding | 1.60E-02 |
| 63 | GO:0004806: triglyceride lipase activity | 1.62E-02 |
| 64 | GO:0050897: cobalt ion binding | 1.93E-02 |
| 65 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.06E-02 |
| 66 | GO:0042803: protein homodimerization activity | 2.13E-02 |
| 67 | GO:0008422: beta-glucosidase activity | 2.19E-02 |
| 68 | GO:0005506: iron ion binding | 2.34E-02 |
| 69 | GO:0004364: glutathione transferase activity | 2.39E-02 |
| 70 | GO:0016298: lipase activity | 3.12E-02 |
| 71 | GO:0031625: ubiquitin protein ligase binding | 3.27E-02 |
| 72 | GO:0022857: transmembrane transporter activity | 3.75E-02 |
| 73 | GO:0051082: unfolded protein binding | 3.91E-02 |
| 74 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.68E-02 |
| 75 | GO:0030170: pyridoxal phosphate binding | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005747: mitochondrial respiratory chain complex I | 3.79E-11 |
| 2 | GO:0000152: nuclear ubiquitin ligase complex | 1.12E-04 |
| 3 | GO:0005773: vacuole | 2.55E-04 |
| 4 | GO:0005764: lysosome | 2.68E-04 |
| 5 | GO:0045271: respiratory chain complex I | 4.13E-04 |
| 6 | GO:0005829: cytosol | 5.10E-04 |
| 7 | GO:0031372: UBC13-MMS2 complex | 8.23E-04 |
| 8 | GO:0033179: proton-transporting V-type ATPase, V0 domain | 8.23E-04 |
| 9 | GO:0009526: plastid envelope | 8.23E-04 |
| 10 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 1.04E-03 |
| 11 | GO:0031463: Cul3-RING ubiquitin ligase complex | 1.27E-03 |
| 12 | GO:0005615: extracellular space | 1.46E-03 |
| 13 | GO:0031359: integral component of chloroplast outer membrane | 1.78E-03 |
| 14 | GO:0005737: cytoplasm | 2.02E-03 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.66E-03 |
| 16 | GO:0016604: nuclear body | 2.97E-03 |
| 17 | GO:0031966: mitochondrial membrane | 3.35E-03 |
| 18 | GO:0005758: mitochondrial intermembrane space | 5.93E-03 |
| 19 | GO:0005623: cell | 6.55E-03 |
| 20 | GO:0009523: photosystem II | 1.06E-02 |
| 21 | GO:0005778: peroxisomal membrane | 1.33E-02 |
| 22 | GO:0005783: endoplasmic reticulum | 1.45E-02 |
| 23 | GO:0009707: chloroplast outer membrane | 1.74E-02 |
| 24 | GO:0005739: mitochondrion | 2.35E-02 |
| 25 | GO:0009507: chloroplast | 2.99E-02 |
| 26 | GO:0009536: plastid | 3.07E-02 |
| 27 | GO:0016607: nuclear speck | 3.51E-02 |
| 28 | GO:0005774: vacuolar membrane | 3.77E-02 |
| 29 | GO:0009706: chloroplast inner membrane | 3.91E-02 |
| 30 | GO:0009543: chloroplast thylakoid lumen | 4.59E-02 |