co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G28510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032499: detection of peptidoglycan	0.00E+00
2	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
3	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
4	GO:0006005: L-fucose biosynthetic process	0.00E+00
5	GO:0032491: detection of molecule of fungal origin	7.23E-05
6	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	7.23E-05
7	GO:0042350: GDP-L-fucose biosynthetic process	7.23E-05
8	GO:0010726: positive regulation of hydrogen peroxide metabolic process	7.23E-05
9	GO:0018920: glyphosate metabolic process	7.23E-05
10	GO:0010155: regulation of proton transport	1.74E-04
11	GO:0006611: protein export from nucleus	1.74E-04
12	GO:0010372: positive regulation of gibberellin biosynthetic process	1.74E-04
13	GO:0010165: response to X-ray	2.93E-04
14	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	2.93E-04
15	GO:0051176: positive regulation of sulfur metabolic process	2.93E-04
16	GO:0000055: ribosomal large subunit export from nucleus	2.93E-04
17	GO:0010447: response to acidic pH	2.93E-04
18	GO:0071323: cellular response to chitin	4.23E-04
19	GO:0030100: regulation of endocytosis	4.23E-04
20	GO:0042742: defense response to bacterium	4.94E-04
21	GO:0006468: protein phosphorylation	5.05E-04
22	GO:0002229: defense response to oomycetes	5.15E-04
23	GO:1902347: response to strigolactone	5.65E-04
24	GO:0033320: UDP-D-xylose biosynthetic process	5.65E-04
25	GO:0006536: glutamate metabolic process	5.65E-04
26	GO:0071219: cellular response to molecule of bacterial origin	5.65E-04
27	GO:0030041: actin filament polymerization	7.14E-04
28	GO:0007029: endoplasmic reticulum organization	7.14E-04
29	GO:0009435: NAD biosynthetic process	7.14E-04
30	GO:0006090: pyruvate metabolic process	7.14E-04
31	GO:0007166: cell surface receptor signaling pathway	7.27E-04
32	GO:0010337: regulation of salicylic acid metabolic process	8.73E-04
33	GO:0010942: positive regulation of cell death	8.73E-04
34	GO:0042732: D-xylose metabolic process	8.73E-04
35	GO:0048317: seed morphogenesis	8.73E-04
36	GO:0006796: phosphate-containing compound metabolic process	8.73E-04
37	GO:0008219: cell death	9.46E-04
38	GO:0009423: chorismate biosynthetic process	1.04E-03
39	GO:0010044: response to aluminum ion	1.21E-03
40	GO:0006955: immune response	1.21E-03
41	GO:0006744: ubiquinone biosynthetic process	1.21E-03
42	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.21E-03
43	GO:0080167: response to karrikin	1.37E-03
44	GO:0045010: actin nucleation	1.40E-03
45	GO:0048658: anther wall tapetum development	1.40E-03
46	GO:1900150: regulation of defense response to fungus	1.40E-03
47	GO:0006402: mRNA catabolic process	1.40E-03
48	GO:0009808: lignin metabolic process	1.59E-03
49	GO:0010208: pollen wall assembly	1.59E-03
50	GO:0009699: phenylpropanoid biosynthetic process	1.59E-03
51	GO:0009060: aerobic respiration	1.80E-03
52	GO:0007062: sister chromatid cohesion	1.80E-03
53	GO:0046685: response to arsenic-containing substance	1.80E-03
54	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.80E-03
55	GO:0008202: steroid metabolic process	2.01E-03
56	GO:0019538: protein metabolic process	2.23E-03
57	GO:0009698: phenylpropanoid metabolic process	2.46E-03
58	GO:0009073: aromatic amino acid family biosynthetic process	2.46E-03
59	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.70E-03
60	GO:0006108: malate metabolic process	2.94E-03
61	GO:0009742: brassinosteroid mediated signaling pathway	3.03E-03
62	GO:0006302: double-strand break repair	3.19E-03
63	GO:0034605: cellular response to heat	3.19E-03
64	GO:0090351: seedling development	3.44E-03
65	GO:0070588: calcium ion transmembrane transport	3.44E-03
66	GO:0009225: nucleotide-sugar metabolic process	3.44E-03
67	GO:0009845: seed germination	3.86E-03
68	GO:0006487: protein N-linked glycosylation	3.98E-03
69	GO:0009863: salicylic acid mediated signaling pathway	3.98E-03
70	GO:0051260: protein homooligomerization	4.54E-03
71	GO:0061077: chaperone-mediated protein folding	4.54E-03
72	GO:0046686: response to cadmium ion	4.72E-03
73	GO:0030433: ubiquitin-dependent ERAD pathway	4.83E-03
74	GO:0016226: iron-sulfur cluster assembly	4.83E-03
75	GO:0040007: growth	5.13E-03
76	GO:0071215: cellular response to abscisic acid stimulus	5.13E-03
77	GO:0009686: gibberellin biosynthetic process	5.13E-03
78	GO:0009306: protein secretion	5.43E-03
79	GO:0000271: polysaccharide biosynthetic process	6.05E-03
80	GO:0042631: cellular response to water deprivation	6.05E-03
81	GO:0009960: endosperm development	6.38E-03
82	GO:0045489: pectin biosynthetic process	6.38E-03
83	GO:0007059: chromosome segregation	6.70E-03
84	GO:0032502: developmental process	7.72E-03
85	GO:0031047: gene silencing by RNA	7.72E-03
86	GO:0010090: trichome morphogenesis	8.07E-03
87	GO:0006464: cellular protein modification process	8.43E-03
88	GO:0006904: vesicle docking involved in exocytosis	8.79E-03
89	GO:0016310: phosphorylation	9.39E-03
90	GO:0009615: response to virus	9.54E-03
91	GO:0001666: response to hypoxia	9.54E-03
92	GO:0010200: response to chitin	9.74E-03
93	GO:0009816: defense response to bacterium, incompatible interaction	9.92E-03
94	GO:0048573: photoperiodism, flowering	1.07E-02
95	GO:0016049: cell growth	1.11E-02
96	GO:0009817: defense response to fungus, incompatible interaction	1.15E-02
97	GO:0009813: flavonoid biosynthetic process	1.19E-02
98	GO:0009834: plant-type secondary cell wall biogenesis	1.23E-02
99	GO:0000724: double-strand break repair via homologous recombination	1.32E-02
100	GO:0016051: carbohydrate biosynthetic process	1.36E-02
101	GO:0009637: response to blue light	1.36E-02
102	GO:0045087: innate immune response	1.36E-02
103	GO:0009408: response to heat	1.39E-02
104	GO:0006839: mitochondrial transport	1.49E-02
105	GO:0006887: exocytosis	1.54E-02
106	GO:0006897: endocytosis	1.54E-02
107	GO:0006810: transport	1.85E-02
108	GO:0043086: negative regulation of catalytic activity	2.26E-02
109	GO:0009626: plant-type hypersensitive response	2.37E-02
110	GO:0009620: response to fungus	2.42E-02
111	GO:0016569: covalent chromatin modification	2.47E-02
112	GO:0009555: pollen development	2.48E-02
113	GO:0009611: response to wounding	2.53E-02
114	GO:0009624: response to nematode	2.58E-02
115	GO:0035556: intracellular signal transduction	2.62E-02
116	GO:0016567: protein ubiquitination	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:2001080: chitosan binding	0.00E+00
2	GO:0008987: quinolinate synthetase A activity	0.00E+00
3	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
4	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	7.23E-05
5	GO:0050577: GDP-L-fucose synthase activity	7.23E-05
6	GO:0015085: calcium ion transmembrane transporter activity	7.23E-05
7	GO:0005524: ATP binding	1.54E-04
8	GO:0001047: core promoter binding	1.74E-04
9	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.93E-04
10	GO:0016301: kinase activity	3.57E-04
11	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	4.23E-04
12	GO:0043023: ribosomal large subunit binding	4.23E-04
13	GO:0004351: glutamate decarboxylase activity	4.23E-04
14	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	4.23E-04
15	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.64E-04
16	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	5.65E-04
17	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	5.65E-04
18	GO:0019199: transmembrane receptor protein kinase activity	5.65E-04
19	GO:0004470: malic enzyme activity	5.65E-04
20	GO:0004674: protein serine/threonine kinase activity	6.36E-04
21	GO:0002020: protease binding	7.14E-04
22	GO:0045431: flavonol synthase activity	7.14E-04
23	GO:0008948: oxaloacetate decarboxylase activity	7.14E-04
24	GO:0016462: pyrophosphatase activity	8.73E-04
25	GO:0048040: UDP-glucuronate decarboxylase activity	8.73E-04
26	GO:0070403: NAD+ binding	1.04E-03
27	GO:0004143: diacylglycerol kinase activity	1.21E-03
28	GO:0004427: inorganic diphosphatase activity	1.21E-03
29	GO:0004714: transmembrane receptor protein tyrosine kinase activity	1.40E-03
30	GO:0003951: NAD+ kinase activity	1.59E-03
31	GO:0008142: oxysterol binding	1.59E-03
32	GO:0008047: enzyme activator activity	2.23E-03
33	GO:0005515: protein binding	2.82E-03
34	GO:0005388: calcium-transporting ATPase activity	2.94E-03
35	GO:0008061: chitin binding	3.44E-03
36	GO:0033612: receptor serine/threonine kinase binding	4.54E-03
37	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.83E-03
38	GO:0050662: coenzyme binding	6.70E-03
39	GO:0016853: isomerase activity	6.70E-03
40	GO:0004518: nuclease activity	7.72E-03
41	GO:0005516: calmodulin binding	7.78E-03
42	GO:0005509: calcium ion binding	1.02E-02
43	GO:0008375: acetylglucosaminyltransferase activity	1.03E-02
44	GO:0030247: polysaccharide binding	1.07E-02
45	GO:0042803: protein homodimerization activity	1.18E-02
46	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.27E-02
47	GO:0051539: 4 iron, 4 sulfur cluster binding	1.49E-02
48	GO:0004842: ubiquitin-protein transferase activity	1.71E-02
49	GO:0035091: phosphatidylinositol binding	1.72E-02
50	GO:0004672: protein kinase activity	1.85E-02
51	GO:0051287: NAD binding	1.86E-02
52	GO:0003729: mRNA binding	1.88E-02
53	GO:0046872: metal ion binding	1.96E-02
54	GO:0031625: ubiquitin protein ligase binding	2.16E-02
55	GO:0003779: actin binding	2.53E-02
56	GO:0051082: unfolded protein binding	2.58E-02
57	GO:0016758: transferase activity, transferring hexosyl groups	2.97E-02
58	GO:0030170: pyridoxal phosphate binding	3.26E-02
59	GO:0046910: pectinesterase inhibitor activity	3.63E-02
60	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.52E-02
61	GO:0042802: identical protein binding	4.52E-02
62	GO:0044212: transcription regulatory region DNA binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	6.30E-06
2	GO:0016442: RISC complex	7.23E-05
3	GO:0000813: ESCRT I complex	7.14E-04
4	GO:0030915: Smc5-Smc6 complex	7.14E-04
5	GO:0016363: nuclear matrix	1.04E-03
6	GO:0010494: cytoplasmic stress granule	1.80E-03
7	GO:0005768: endosome	2.05E-03
8	GO:0048471: perinuclear region of cytoplasm	2.46E-03
9	GO:0010008: endosome membrane	2.46E-03
10	GO:0090404: pollen tube tip	2.46E-03
11	GO:0043234: protein complex	3.71E-03
12	GO:0005770: late endosome	6.38E-03
13	GO:0000145: exocyst	7.72E-03
14	GO:0032580: Golgi cisterna membrane	8.43E-03
15	GO:0000932: P-body	9.54E-03
16	GO:0016021: integral component of membrane	9.55E-03
17	GO:0005794: Golgi apparatus	1.05E-02
18	GO:0019005: SCF ubiquitin ligase complex	1.15E-02
19	GO:0005783: endoplasmic reticulum	1.47E-02
20	GO:0009506: plasmodesma	1.58E-02
21	GO:0005774: vacuolar membrane	1.58E-02
22	GO:0005635: nuclear envelope	2.11E-02
23	GO:0009524: phragmoplast	3.15E-02
24	GO:0005802: trans-Golgi network	3.96E-02