co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G27730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0008298: intracellular mRNA localization	0.00E+00
2	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0016123: xanthophyll biosynthetic process	1.75E-05
5	GO:0016120: carotene biosynthetic process	1.75E-05
6	GO:0009657: plastid organization	8.31E-05
7	GO:0031426: polycistronic mRNA processing	1.10E-04
8	GO:1904966: positive regulation of vitamin E biosynthetic process	1.10E-04
9	GO:1904964: positive regulation of phytol biosynthetic process	1.10E-04
10	GO:0006436: tryptophanyl-tRNA aminoacylation	1.10E-04
11	GO:0019646: aerobic electron transport chain	1.10E-04
12	GO:0030187: melatonin biosynthetic process	2.57E-04
13	GO:0000256: allantoin catabolic process	2.57E-04
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.57E-04
15	GO:0034755: iron ion transmembrane transport	2.57E-04
16	GO:0006435: threonyl-tRNA aminoacylation	2.57E-04
17	GO:0080005: photosystem stoichiometry adjustment	2.57E-04
18	GO:0010136: ureide catabolic process	4.25E-04
19	GO:0009405: pathogenesis	4.25E-04
20	GO:0006013: mannose metabolic process	4.25E-04
21	GO:0002230: positive regulation of defense response to virus by host	4.25E-04
22	GO:1901672: positive regulation of systemic acquired resistance	4.25E-04
23	GO:0046739: transport of virus in multicellular host	6.10E-04
24	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.10E-04
25	GO:0010239: chloroplast mRNA processing	6.10E-04
26	GO:0090307: mitotic spindle assembly	6.10E-04
27	GO:0006145: purine nucleobase catabolic process	6.10E-04
28	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	6.10E-04
29	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.10E-04
30	GO:0009226: nucleotide-sugar biosynthetic process	6.10E-04
31	GO:0006021: inositol biosynthetic process	8.10E-04
32	GO:0031935: regulation of chromatin silencing	8.10E-04
33	GO:0009765: photosynthesis, light harvesting	8.10E-04
34	GO:0031122: cytoplasmic microtubule organization	8.10E-04
35	GO:0016032: viral process	9.34E-04
36	GO:0031365: N-terminal protein amino acid modification	1.02E-03
37	GO:0006282: regulation of DNA repair	1.02E-03
38	GO:0034052: positive regulation of plant-type hypersensitive response	1.02E-03
39	GO:0042549: photosystem II stabilization	1.25E-03
40	GO:0046855: inositol phosphate dephosphorylation	1.25E-03
41	GO:0006655: phosphatidylglycerol biosynthetic process	1.25E-03
42	GO:0010189: vitamin E biosynthetic process	1.49E-03
43	GO:0042372: phylloquinone biosynthetic process	1.49E-03
44	GO:0006401: RNA catabolic process	1.75E-03
45	GO:1900056: negative regulation of leaf senescence	1.75E-03
46	GO:0007568: aging	1.86E-03
47	GO:0048564: photosystem I assembly	2.03E-03
48	GO:0006402: mRNA catabolic process	2.03E-03
49	GO:0030091: protein repair	2.03E-03
50	GO:0071482: cellular response to light stimulus	2.32E-03
51	GO:0006098: pentose-phosphate shunt	2.62E-03
52	GO:0048507: meristem development	2.62E-03
53	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.62E-03
54	GO:0008202: steroid metabolic process	2.93E-03
55	GO:1900426: positive regulation of defense response to bacterium	2.93E-03
56	GO:0010380: regulation of chlorophyll biosynthetic process	2.93E-03
57	GO:0031425: chloroplast RNA processing	2.93E-03
58	GO:0006879: cellular iron ion homeostasis	3.59E-03
59	GO:0006415: translational termination	3.59E-03
60	GO:0006790: sulfur compound metabolic process	3.93E-03
61	GO:0016024: CDP-diacylglycerol biosynthetic process	3.93E-03
62	GO:0055114: oxidation-reduction process	3.99E-03
63	GO:0006094: gluconeogenesis	4.30E-03
64	GO:0010207: photosystem II assembly	4.66E-03
65	GO:0046854: phosphatidylinositol phosphorylation	5.04E-03
66	GO:0019853: L-ascorbic acid biosynthetic process	5.04E-03
67	GO:0006396: RNA processing	5.13E-03
68	GO:0009793: embryo development ending in seed dormancy	5.80E-03
69	GO:0006418: tRNA aminoacylation for protein translation	6.25E-03
70	GO:0006413: translational initiation	8.01E-03
71	GO:0016117: carotenoid biosynthetic process	8.46E-03
72	GO:0008033: tRNA processing	8.93E-03
73	GO:0010468: regulation of gene expression	1.03E-02
74	GO:0008654: phospholipid biosynthetic process	1.04E-02
75	GO:0009791: post-embryonic development	1.04E-02
76	GO:0010193: response to ozone	1.09E-02
77	GO:0031047: gene silencing by RNA	1.14E-02
78	GO:1901657: glycosyl compound metabolic process	1.20E-02
79	GO:0006464: cellular protein modification process	1.25E-02
80	GO:0009658: chloroplast organization	1.33E-02
81	GO:0051607: defense response to virus	1.36E-02
82	GO:0001666: response to hypoxia	1.42E-02
83	GO:0009816: defense response to bacterium, incompatible interaction	1.47E-02
84	GO:0042128: nitrate assimilation	1.53E-02
85	GO:0015995: chlorophyll biosynthetic process	1.59E-02
86	GO:0080167: response to karrikin	1.66E-02
87	GO:0018298: protein-chromophore linkage	1.71E-02
88	GO:0009817: defense response to fungus, incompatible interaction	1.71E-02
89	GO:0048481: plant ovule development	1.71E-02
90	GO:0009813: flavonoid biosynthetic process	1.77E-02
91	GO:0009910: negative regulation of flower development	1.89E-02
92	GO:0032259: methylation	2.34E-02
93	GO:0010114: response to red light	2.42E-02
94	GO:0006397: mRNA processing	2.55E-02
95	GO:0006364: rRNA processing	2.99E-02
96	GO:0010224: response to UV-B	3.07E-02
97	GO:0006417: regulation of translation	3.22E-02
98	GO:0006096: glycolytic process	3.37E-02
99	GO:0009626: plant-type hypersensitive response	3.53E-02
100	GO:0016569: covalent chromatin modification	3.69E-02
101	GO:0009845: seed germination	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.10E-04
7	GO:0004830: tryptophan-tRNA ligase activity	1.10E-04
8	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.10E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.10E-04
10	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.10E-04
11	GO:0004829: threonine-tRNA ligase activity	2.57E-04
12	GO:0052832: inositol monophosphate 3-phosphatase activity	2.57E-04
13	GO:0008934: inositol monophosphate 1-phosphatase activity	2.57E-04
14	GO:0052833: inositol monophosphate 4-phosphatase activity	2.57E-04
15	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.25E-04
16	GO:0004751: ribose-5-phosphate isomerase activity	4.25E-04
17	GO:0004148: dihydrolipoyl dehydrogenase activity	4.25E-04
18	GO:0016491: oxidoreductase activity	5.25E-04
19	GO:0016149: translation release factor activity, codon specific	6.10E-04
20	GO:0048027: mRNA 5'-UTR binding	6.10E-04
21	GO:0008080: N-acetyltransferase activity	7.18E-04
22	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	8.10E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.10E-04
24	GO:0043015: gamma-tubulin binding	8.10E-04
25	GO:0043495: protein anchor	8.10E-04
26	GO:0051011: microtubule minus-end binding	1.02E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	1.25E-03
28	GO:0004332: fructose-bisphosphate aldolase activity	1.25E-03
29	GO:0004559: alpha-mannosidase activity	1.49E-03
30	GO:0015631: tubulin binding	1.49E-03
31	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.49E-03
32	GO:0019899: enzyme binding	1.75E-03
33	GO:0008235: metalloexopeptidase activity	1.75E-03
34	GO:0008142: oxysterol binding	2.32E-03
35	GO:0003747: translation release factor activity	2.62E-03
36	GO:0005381: iron ion transmembrane transporter activity	2.93E-03
37	GO:0004177: aminopeptidase activity	3.59E-03
38	GO:0031625: ubiquitin protein ligase binding	3.88E-03
39	GO:0000175: 3'-5'-exoribonuclease activity	4.30E-03
40	GO:0003954: NADH dehydrogenase activity	5.84E-03
41	GO:0005528: FK506 binding	5.84E-03
42	GO:0004176: ATP-dependent peptidase activity	6.67E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	7.55E-03
44	GO:0003727: single-stranded RNA binding	8.00E-03
45	GO:0004812: aminoacyl-tRNA ligase activity	8.46E-03
46	GO:0010181: FMN binding	9.91E-03
47	GO:0003743: translation initiation factor activity	1.00E-02
48	GO:0048038: quinone binding	1.09E-02
49	GO:0004518: nuclease activity	1.14E-02
50	GO:0008168: methyltransferase activity	1.28E-02
51	GO:0005200: structural constituent of cytoskeleton	1.30E-02
52	GO:0016168: chlorophyll binding	1.47E-02
53	GO:0102483: scopolin beta-glucosidase activity	1.59E-02
54	GO:0008233: peptidase activity	1.63E-02
55	GO:0061630: ubiquitin protein ligase activity	1.74E-02
56	GO:0050897: cobalt ion binding	1.89E-02
57	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.02E-02
58	GO:0008422: beta-glucosidase activity	2.15E-02
59	GO:0051537: 2 iron, 2 sulfur cluster binding	2.56E-02
60	GO:0043621: protein self-association	2.56E-02
61	GO:0009055: electron carrier activity	2.63E-02
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.70E-02
63	GO:0016746: transferase activity, transferring acyl groups	3.93E-02
64	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.60E-02
65	GO:0003676: nucleic acid binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.12E-20
2	GO:0009535: chloroplast thylakoid membrane	1.66E-06
3	GO:0009941: chloroplast envelope	3.53E-05
4	GO:0031969: chloroplast membrane	5.49E-05
5	GO:0009543: chloroplast thylakoid lumen	8.87E-05
6	GO:0008274: gamma-tubulin ring complex	2.57E-04
7	GO:0031304: intrinsic component of mitochondrial inner membrane	2.57E-04
8	GO:0000923: equatorial microtubule organizing center	6.10E-04
9	GO:0009523: photosystem II	8.23E-04
10	GO:0009570: chloroplast stroma	1.36E-03
11	GO:0031977: thylakoid lumen	2.41E-03
12	GO:0009534: chloroplast thylakoid	2.60E-03
13	GO:0000922: spindle pole	2.62E-03
14	GO:0042644: chloroplast nucleoid	2.62E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.62E-03
16	GO:0030095: chloroplast photosystem II	4.66E-03
17	GO:0042651: thylakoid membrane	6.25E-03
18	GO:0009707: chloroplast outer membrane	1.71E-02
19	GO:0009536: plastid	2.99E-02
20	GO:0005747: mitochondrial respiratory chain complex I	3.45E-02
21	GO:0010287: plastoglobule	4.34E-02