GO Enrichment Analysis of Co-expressed Genes with
AT5G27395
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 6 | GO:0031591: wybutosine biosynthetic process | 0.00E+00 |
| 7 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 8 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 9 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 10 | GO:0006364: rRNA processing | 7.45E-16 |
| 11 | GO:0006412: translation | 8.86E-10 |
| 12 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.19E-06 |
| 13 | GO:0010162: seed dormancy process | 5.88E-06 |
| 14 | GO:0009553: embryo sac development | 9.45E-06 |
| 15 | GO:0042273: ribosomal large subunit biogenesis | 1.93E-05 |
| 16 | GO:0000470: maturation of LSU-rRNA | 4.69E-05 |
| 17 | GO:0006458: 'de novo' protein folding | 6.56E-05 |
| 18 | GO:0042254: ribosome biogenesis | 1.02E-04 |
| 19 | GO:0000494: box C/D snoRNA 3'-end processing | 1.56E-04 |
| 20 | GO:0043985: histone H4-R3 methylation | 1.56E-04 |
| 21 | GO:1990258: histone glutamine methylation | 1.56E-04 |
| 22 | GO:0006169: adenosine salvage | 1.56E-04 |
| 23 | GO:0031120: snRNA pseudouridine synthesis | 1.56E-04 |
| 24 | GO:0031118: rRNA pseudouridine synthesis | 1.56E-04 |
| 25 | GO:0045041: protein import into mitochondrial intermembrane space | 3.55E-04 |
| 26 | GO:0034470: ncRNA processing | 3.55E-04 |
| 27 | GO:0048569: post-embryonic animal organ development | 3.55E-04 |
| 28 | GO:0009967: positive regulation of signal transduction | 3.55E-04 |
| 29 | GO:0080009: mRNA methylation | 3.55E-04 |
| 30 | GO:0006626: protein targeting to mitochondrion | 3.74E-04 |
| 31 | GO:0045039: protein import into mitochondrial inner membrane | 5.82E-04 |
| 32 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.84E-04 |
| 33 | GO:0051302: regulation of cell division | 6.43E-04 |
| 34 | GO:0061077: chaperone-mediated protein folding | 7.05E-04 |
| 35 | GO:0007005: mitochondrion organization | 7.69E-04 |
| 36 | GO:0007276: gamete generation | 8.33E-04 |
| 37 | GO:0009855: determination of bilateral symmetry | 8.33E-04 |
| 38 | GO:0051131: chaperone-mediated protein complex assembly | 8.33E-04 |
| 39 | GO:0009294: DNA mediated transformation | 8.37E-04 |
| 40 | GO:0009561: megagametogenesis | 9.07E-04 |
| 41 | GO:0016569: covalent chromatin modification | 1.05E-03 |
| 42 | GO:0008033: tRNA processing | 1.05E-03 |
| 43 | GO:0010501: RNA secondary structure unwinding | 1.05E-03 |
| 44 | GO:1900864: mitochondrial RNA modification | 1.10E-03 |
| 45 | GO:0042274: ribosomal small subunit biogenesis | 1.10E-03 |
| 46 | GO:0000460: maturation of 5.8S rRNA | 1.10E-03 |
| 47 | GO:0006479: protein methylation | 1.10E-03 |
| 48 | GO:0010197: polar nucleus fusion | 1.13E-03 |
| 49 | GO:0044209: AMP salvage | 1.40E-03 |
| 50 | GO:0000380: alternative mRNA splicing, via spliceosome | 1.40E-03 |
| 51 | GO:0010375: stomatal complex patterning | 1.40E-03 |
| 52 | GO:0031167: rRNA methylation | 1.40E-03 |
| 53 | GO:0016554: cytidine to uridine editing | 1.72E-03 |
| 54 | GO:0000741: karyogamy | 1.72E-03 |
| 55 | GO:0016070: RNA metabolic process | 1.72E-03 |
| 56 | GO:0009955: adaxial/abaxial pattern specification | 2.06E-03 |
| 57 | GO:0042026: protein refolding | 2.06E-03 |
| 58 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.06E-03 |
| 59 | GO:0016444: somatic cell DNA recombination | 2.06E-03 |
| 60 | GO:0080186: developmental vegetative growth | 2.42E-03 |
| 61 | GO:0010374: stomatal complex development | 2.42E-03 |
| 62 | GO:0001510: RNA methylation | 3.21E-03 |
| 63 | GO:0001558: regulation of cell growth | 3.21E-03 |
| 64 | GO:0007338: single fertilization | 3.63E-03 |
| 65 | GO:0000387: spliceosomal snRNP assembly | 4.06E-03 |
| 66 | GO:1900865: chloroplast RNA modification | 4.06E-03 |
| 67 | GO:0030422: production of siRNA involved in RNA interference | 4.52E-03 |
| 68 | GO:0006913: nucleocytoplasmic transport | 4.99E-03 |
| 69 | GO:0006457: protein folding | 6.03E-03 |
| 70 | GO:0046686: response to cadmium ion | 6.82E-03 |
| 71 | GO:0010030: positive regulation of seed germination | 7.04E-03 |
| 72 | GO:0000027: ribosomal large subunit assembly | 8.16E-03 |
| 73 | GO:0030150: protein import into mitochondrial matrix | 8.16E-03 |
| 74 | GO:0000398: mRNA splicing, via spliceosome | 9.31E-03 |
| 75 | GO:0006334: nucleosome assembly | 9.34E-03 |
| 76 | GO:0071215: cellular response to abscisic acid stimulus | 1.06E-02 |
| 77 | GO:0070417: cellular response to cold | 1.19E-02 |
| 78 | GO:0000413: protein peptidyl-prolyl isomerization | 1.25E-02 |
| 79 | GO:0006413: translational initiation | 1.30E-02 |
| 80 | GO:0009960: endosperm development | 1.32E-02 |
| 81 | GO:0080156: mitochondrial mRNA modification | 1.54E-02 |
| 82 | GO:0006635: fatty acid beta-oxidation | 1.54E-02 |
| 83 | GO:0009735: response to cytokinin | 1.57E-02 |
| 84 | GO:0016032: viral process | 1.61E-02 |
| 85 | GO:0009567: double fertilization forming a zygote and endosperm | 1.76E-02 |
| 86 | GO:0016049: cell growth | 2.32E-02 |
| 87 | GO:0010311: lateral root formation | 2.50E-02 |
| 88 | GO:0048527: lateral root development | 2.67E-02 |
| 89 | GO:0000724: double-strand break repair via homologous recombination | 2.76E-02 |
| 90 | GO:0006099: tricarboxylic acid cycle | 2.94E-02 |
| 91 | GO:0045892: negative regulation of transcription, DNA-templated | 3.27E-02 |
| 92 | GO:0008283: cell proliferation | 3.42E-02 |
| 93 | GO:0000154: rRNA modification | 3.71E-02 |
| 94 | GO:0032259: methylation | 3.79E-02 |
| 95 | GO:0009793: embryo development ending in seed dormancy | 4.11E-02 |
| 96 | GO:0048367: shoot system development | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0102522: tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity | 0.00E+00 |
| 3 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 4 | GO:0003723: RNA binding | 2.63E-17 |
| 5 | GO:0003735: structural constituent of ribosome | 5.81E-13 |
| 6 | GO:0000166: nucleotide binding | 2.18E-07 |
| 7 | GO:0004407: histone deacetylase activity | 5.06E-07 |
| 8 | GO:0030515: snoRNA binding | 1.01E-06 |
| 9 | GO:0043021: ribonucleoprotein complex binding | 1.19E-06 |
| 10 | GO:0044183: protein binding involved in protein folding | 7.66E-06 |
| 11 | GO:0019843: rRNA binding | 1.77E-05 |
| 12 | GO:0008026: ATP-dependent helicase activity | 1.55E-04 |
| 13 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.56E-04 |
| 14 | GO:0004001: adenosine kinase activity | 1.56E-04 |
| 15 | GO:0048037: cofactor binding | 1.56E-04 |
| 16 | GO:1990259: histone-glutamine methyltransferase activity | 1.56E-04 |
| 17 | GO:0042134: rRNA primary transcript binding | 1.56E-04 |
| 18 | GO:0001055: RNA polymerase II activity | 2.08E-04 |
| 19 | GO:0001054: RNA polymerase I activity | 2.86E-04 |
| 20 | GO:0050897: cobalt ion binding | 3.23E-04 |
| 21 | GO:0001056: RNA polymerase III activity | 3.29E-04 |
| 22 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.55E-04 |
| 23 | GO:0005078: MAP-kinase scaffold activity | 3.55E-04 |
| 24 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.55E-04 |
| 25 | GO:0003746: translation elongation factor activity | 3.64E-04 |
| 26 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 5.82E-04 |
| 27 | GO:0070181: small ribosomal subunit rRNA binding | 5.82E-04 |
| 28 | GO:0008649: rRNA methyltransferase activity | 5.82E-04 |
| 29 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.34E-04 |
| 30 | GO:0051082: unfolded protein binding | 1.14E-03 |
| 31 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.72E-03 |
| 32 | GO:0004004: ATP-dependent RNA helicase activity | 2.34E-03 |
| 33 | GO:0008235: metalloexopeptidase activity | 2.42E-03 |
| 34 | GO:0008135: translation factor activity, RNA binding | 3.21E-03 |
| 35 | GO:0008168: methyltransferase activity | 3.74E-03 |
| 36 | GO:0000049: tRNA binding | 5.48E-03 |
| 37 | GO:0009982: pseudouridine synthase activity | 5.98E-03 |
| 38 | GO:0000175: 3'-5'-exoribonuclease activity | 5.98E-03 |
| 39 | GO:0003729: mRNA binding | 6.30E-03 |
| 40 | GO:0005507: copper ion binding | 6.97E-03 |
| 41 | GO:0003924: GTPase activity | 8.46E-03 |
| 42 | GO:0005525: GTP binding | 8.67E-03 |
| 43 | GO:0051087: chaperone binding | 8.74E-03 |
| 44 | GO:0016787: hydrolase activity | 1.19E-02 |
| 45 | GO:0003676: nucleic acid binding | 1.29E-02 |
| 46 | GO:0004527: exonuclease activity | 1.32E-02 |
| 47 | GO:0010181: FMN binding | 1.39E-02 |
| 48 | GO:0003743: translation initiation factor activity | 1.63E-02 |
| 49 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.32E-02 |
| 50 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.41E-02 |
| 51 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.94E-02 |
| 52 | GO:0005515: protein binding | 2.99E-02 |
| 53 | GO:0042393: histone binding | 3.13E-02 |
| 54 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.13E-02 |
| 55 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.81E-02 |
| 56 | GO:0005524: ATP binding | 3.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 4 | GO:0036396: MIS complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 3.26E-37 |
| 6 | GO:0032040: small-subunit processome | 6.97E-12 |
| 7 | GO:0005840: ribosome | 4.63E-08 |
| 8 | GO:0022625: cytosolic large ribosomal subunit | 8.05E-08 |
| 9 | GO:0030687: preribosome, large subunit precursor | 1.01E-06 |
| 10 | GO:0070545: PeBoW complex | 1.19E-06 |
| 11 | GO:0022626: cytosolic ribosome | 2.30E-06 |
| 12 | GO:0005834: heterotrimeric G-protein complex | 7.51E-06 |
| 13 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.16E-05 |
| 14 | GO:0031428: box C/D snoRNP complex | 4.69E-05 |
| 15 | GO:0022627: cytosolic small ribosomal subunit | 7.04E-05 |
| 16 | GO:0005829: cytosol | 1.25E-04 |
| 17 | GO:0005736: DNA-directed RNA polymerase I complex | 1.73E-04 |
| 18 | GO:0015030: Cajal body | 2.08E-04 |
| 19 | GO:0005666: DNA-directed RNA polymerase III complex | 2.08E-04 |
| 20 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.46E-04 |
| 21 | GO:0005634: nucleus | 2.64E-04 |
| 22 | GO:0005759: mitochondrial matrix | 3.01E-04 |
| 23 | GO:0015934: large ribosomal subunit | 3.23E-04 |
| 24 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.29E-04 |
| 25 | GO:0000419: DNA-directed RNA polymerase V complex | 5.28E-04 |
| 26 | GO:0015935: small ribosomal subunit | 7.05E-04 |
| 27 | GO:0031429: box H/ACA snoRNP complex | 8.33E-04 |
| 28 | GO:0005747: mitochondrial respiratory chain complex I | 9.40E-04 |
| 29 | GO:0005739: mitochondrion | 1.08E-03 |
| 30 | GO:0005618: cell wall | 1.33E-03 |
| 31 | GO:0000178: exosome (RNase complex) | 1.40E-03 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 1.99E-03 |
| 33 | GO:0016363: nuclear matrix | 2.06E-03 |
| 34 | GO:0005688: U6 snRNP | 2.80E-03 |
| 35 | GO:0034399: nuclear periphery | 2.80E-03 |
| 36 | GO:0005774: vacuolar membrane | 3.04E-03 |
| 37 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 3.21E-03 |
| 38 | GO:0005742: mitochondrial outer membrane translocase complex | 3.21E-03 |
| 39 | GO:0005763: mitochondrial small ribosomal subunit | 3.63E-03 |
| 40 | GO:0019013: viral nucleocapsid | 5.98E-03 |
| 41 | GO:0005681: spliceosomal complex | 6.69E-03 |
| 42 | GO:0005758: mitochondrial intermembrane space | 8.16E-03 |
| 43 | GO:0005732: small nucleolar ribonucleoprotein complex | 8.79E-03 |
| 44 | GO:0005654: nucleoplasm | 9.83E-03 |
| 45 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.12E-02 |
| 46 | GO:0016592: mediator complex | 1.61E-02 |
| 47 | GO:0005773: vacuole | 2.10E-02 |
| 48 | GO:0009506: plasmodesma | 2.22E-02 |
| 49 | GO:0005737: cytoplasm | 3.55E-02 |
| 50 | GO:0005622: intracellular | 3.59E-02 |
| 51 | GO:0005743: mitochondrial inner membrane | 3.68E-02 |
| 52 | GO:0016607: nuclear speck | 4.86E-02 |