co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25757

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001732: formation of cytoplasmic translation initiation complex	0.00E+00
2	GO:0002191: cap-dependent translational initiation	0.00E+00
3	GO:0002188: translation reinitiation	0.00E+00
4	GO:0033587: shikimate biosynthetic process	0.00E+00
5	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
6	GO:0048867: stem cell fate determination	0.00E+00
7	GO:0017126: nucleologenesis	0.00E+00
8	GO:0071731: response to nitric oxide	0.00E+00
9	GO:0090069: regulation of ribosome biogenesis	0.00E+00
10	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
11	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
12	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
13	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
14	GO:0051050: positive regulation of transport	0.00E+00
15	GO:0006364: rRNA processing	5.21E-15
16	GO:0042254: ribosome biogenesis	1.38E-07
17	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.94E-07
18	GO:0006413: translational initiation	5.70E-07
19	GO:0009553: embryo sac development	6.30E-05
20	GO:0009793: embryo development ending in seed dormancy	1.14E-04
21	GO:0031120: snRNA pseudouridine synthesis	1.16E-04
22	GO:0000469: cleavage involved in rRNA processing	1.16E-04
23	GO:0031118: rRNA pseudouridine synthesis	1.16E-04
24	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.16E-04
25	GO:0030490: maturation of SSU-rRNA	1.16E-04
26	GO:1902182: shoot apical meristem development	1.16E-04
27	GO:0006007: glucose catabolic process	1.16E-04
28	GO:2000232: regulation of rRNA processing	1.16E-04
29	GO:0043985: histone H4-R3 methylation	1.16E-04
30	GO:0010162: seed dormancy process	1.59E-04
31	GO:0080009: mRNA methylation	2.69E-04
32	GO:0034470: ncRNA processing	2.69E-04
33	GO:0006610: ribosomal protein import into nucleus	2.69E-04
34	GO:0009944: polarity specification of adaxial/abaxial axis	3.91E-04
35	GO:0051302: regulation of cell division	4.32E-04
36	GO:0006556: S-adenosylmethionine biosynthetic process	4.45E-04
37	GO:0045604: regulation of epidermal cell differentiation	4.45E-04
38	GO:0009294: DNA mediated transformation	5.64E-04
39	GO:0009561: megagametogenesis	6.12E-04
40	GO:0007276: gamete generation	6.38E-04
41	GO:0046686: response to cadmium ion	8.45E-04
42	GO:0000460: maturation of 5.8S rRNA	8.47E-04
43	GO:0006479: protein methylation	8.47E-04
44	GO:0046345: abscisic acid catabolic process	8.47E-04
45	GO:0042274: ribosomal small subunit biogenesis	8.47E-04
46	GO:0042273: ribosomal large subunit biogenesis	8.47E-04
47	GO:0006412: translation	9.36E-04
48	GO:0000380: alternative mRNA splicing, via spliceosome	1.07E-03
49	GO:0000060: protein import into nucleus, translocation	1.31E-03
50	GO:0001731: formation of translation preinitiation complex	1.31E-03
51	GO:0000470: maturation of LSU-rRNA	1.31E-03
52	GO:0009423: chorismate biosynthetic process	1.56E-03
53	GO:0048444: floral organ morphogenesis	1.56E-03
54	GO:0010077: maintenance of inflorescence meristem identity	1.56E-03
55	GO:0045995: regulation of embryonic development	1.84E-03
56	GO:0006875: cellular metal ion homeostasis	2.13E-03
57	GO:0000028: ribosomal small subunit assembly	2.13E-03
58	GO:0042255: ribosome assembly	2.13E-03
59	GO:2000024: regulation of leaf development	2.74E-03
60	GO:0006607: NLS-bearing protein import into nucleus	2.74E-03
61	GO:0006098: pentose-phosphate shunt	2.74E-03
62	GO:0000387: spliceosomal snRNP assembly	3.07E-03
63	GO:0006457: protein folding	3.21E-03
64	GO:0009073: aromatic amino acid family biosynthetic process	3.76E-03
65	GO:0006352: DNA-templated transcription, initiation	3.76E-03
66	GO:0009651: response to salt stress	3.82E-03
67	GO:0045892: negative regulation of transcription, DNA-templated	3.90E-03
68	GO:0010152: pollen maturation	4.13E-03
69	GO:0010582: floral meristem determinacy	4.13E-03
70	GO:0006096: glycolytic process	4.44E-03
71	GO:0006108: malate metabolic process	4.50E-03
72	GO:0006446: regulation of translational initiation	4.89E-03
73	GO:0016569: covalent chromatin modification	5.02E-03
74	GO:0010030: positive regulation of seed germination	5.29E-03
75	GO:0030150: protein import into mitochondrial matrix	6.12E-03
76	GO:0010073: meristem maintenance	6.56E-03
77	GO:0006874: cellular calcium ion homeostasis	6.56E-03
78	GO:0006730: one-carbon metabolic process	7.46E-03
79	GO:0007005: mitochondrion organization	7.46E-03
80	GO:0009790: embryo development	7.79E-03
81	GO:0009693: ethylene biosynthetic process	7.92E-03
82	GO:0070417: cellular response to cold	8.88E-03
83	GO:0009735: response to cytokinin	9.24E-03
84	GO:0010501: RNA secondary structure unwinding	9.38E-03
85	GO:0010118: stomatal movement	9.38E-03
86	GO:0006342: chromatin silencing	9.89E-03
87	GO:0009555: pollen development	1.04E-02
88	GO:0048825: cotyledon development	1.09E-02
89	GO:0071281: cellular response to iron ion	1.26E-02
90	GO:0006414: translational elongation	1.72E-02
91	GO:0016049: cell growth	1.73E-02
92	GO:0048527: lateral root development	1.99E-02
93	GO:0006099: tricarboxylic acid cycle	2.19E-02
94	GO:0006839: mitochondrial transport	2.33E-02
95	GO:0032259: methylation	2.51E-02
96	GO:0009640: photomorphogenesis	2.54E-02
97	GO:0000154: rRNA modification	2.76E-02
98	GO:0009846: pollen germination	2.99E-02
99	GO:0009809: lignin biosynthetic process	3.15E-02
100	GO:0009909: regulation of flower development	3.38E-02
101	GO:0006417: regulation of translation	3.38E-02
102	GO:0006396: RNA processing	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
3	GO:0004164: diphthine synthase activity	0.00E+00
4	GO:0004107: chorismate synthase activity	0.00E+00
5	GO:0003723: RNA binding	6.75E-10
6	GO:0030515: snoRNA binding	4.82E-07
7	GO:0000166: nucleotide binding	5.55E-07
8	GO:0043021: ribonucleoprotein complex binding	6.85E-07
9	GO:0003743: translation initiation factor activity	1.14E-06
10	GO:0004407: histone deacetylase activity	1.34E-05
11	GO:0008746: NAD(P)+ transhydrogenase activity	1.16E-04
12	GO:0042134: rRNA primary transcript binding	1.16E-04
13	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.16E-04
14	GO:0030371: translation repressor activity	1.16E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.16E-04
16	GO:0001054: RNA polymerase I activity	1.86E-04
17	GO:0003746: translation elongation factor activity	2.10E-04
18	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.69E-04
19	GO:0003735: structural constituent of ribosome	3.53E-04
20	GO:0004478: methionine adenosyltransferase activity	4.45E-04
21	GO:0019829: cation-transporting ATPase activity	4.45E-04
22	GO:0070181: small ribosomal subunit rRNA binding	4.45E-04
23	GO:0008026: ATP-dependent helicase activity	7.34E-04
24	GO:0003729: mRNA binding	7.72E-04
25	GO:0016615: malate dehydrogenase activity	1.31E-03
26	GO:0030060: L-malate dehydrogenase activity	1.56E-03
27	GO:0008168: methyltransferase activity	2.21E-03
28	GO:0008135: translation factor activity, RNA binding	2.43E-03
29	GO:0030955: potassium ion binding	3.07E-03
30	GO:0004743: pyruvate kinase activity	3.07E-03
31	GO:0044183: protein binding involved in protein folding	3.76E-03
32	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.76E-03
33	GO:0004521: endoribonuclease activity	4.13E-03
34	GO:0001056: RNA polymerase III activity	4.13E-03
35	GO:0008139: nuclear localization sequence binding	4.50E-03
36	GO:0009982: pseudouridine synthase activity	4.50E-03
37	GO:0015114: phosphate ion transmembrane transporter activity	4.50E-03
38	GO:0005388: calcium-transporting ATPase activity	4.50E-03
39	GO:0003924: GTPase activity	4.99E-03
40	GO:0043130: ubiquitin binding	6.12E-03
41	GO:0003713: transcription coactivator activity	9.89E-03
42	GO:0010181: FMN binding	1.04E-02
43	GO:0005515: protein binding	1.31E-02
44	GO:0004721: phosphoprotein phosphatase activity	1.67E-02
45	GO:0004004: ATP-dependent RNA helicase activity	1.67E-02
46	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.73E-02
47	GO:0003676: nucleic acid binding	1.77E-02
48	GO:0005525: GTP binding	1.95E-02
49	GO:0050897: cobalt ion binding	1.99E-02
50	GO:0030145: manganese ion binding	1.99E-02
51	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.19E-02
52	GO:0042393: histone binding	2.33E-02
53	GO:0008270: zinc ion binding	3.64E-02
54	GO:0051082: unfolded protein binding	4.04E-02
55	GO:0019843: rRNA binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e	0.00E+00
3	GO:0034455: t-UTP complex	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0070545: PeBoW complex	0.00E+00
6	GO:0030692: Noc4p-Nop14p complex	0.00E+00
7	GO:0005730: nucleolus	1.36E-35
8	GO:0032040: small-subunit processome	7.44E-15
9	GO:0005829: cytosol	9.57E-08
10	GO:0030687: preribosome, large subunit precursor	4.82E-07
11	GO:0005634: nucleus	1.79E-06
12	GO:0005618: cell wall	2.42E-05
13	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.88E-05
14	GO:0034399: nuclear periphery	7.12E-05
15	GO:0005654: nucleoplasm	9.59E-05
16	GO:0005736: DNA-directed RNA polymerase I complex	1.11E-04
17	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	1.16E-04
18	GO:0030688: preribosome, small subunit precursor	1.16E-04
19	GO:0043614: multi-eIF complex	1.16E-04
20	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	1.16E-04
21	GO:0005852: eukaryotic translation initiation factor 3 complex	1.86E-04
22	GO:0030089: phycobilisome	2.69E-04
23	GO:0022627: cytosolic small ribosomal subunit	2.83E-04
24	GO:0030130: clathrin coat of trans-Golgi network vesicle	4.45E-04
25	GO:0030132: clathrin coat of coated pit	4.45E-04
26	GO:0005834: heterotrimeric G-protein complex	5.86E-04
27	GO:0031429: box H/ACA snoRNP complex	6.38E-04
28	GO:0009506: plasmodesma	1.17E-03
29	GO:0016282: eukaryotic 43S preinitiation complex	1.31E-03
30	GO:0031428: box C/D snoRNP complex	1.31E-03
31	GO:0033290: eukaryotic 48S preinitiation complex	1.56E-03
32	GO:0031597: cytosolic proteasome complex	1.56E-03
33	GO:0016363: nuclear matrix	1.56E-03
34	GO:0005840: ribosome	1.64E-03
35	GO:0008180: COP9 signalosome	2.74E-03
36	GO:0005763: mitochondrial small ribosomal subunit	2.74E-03
37	GO:0005666: DNA-directed RNA polymerase III complex	3.07E-03
38	GO:0015030: Cajal body	3.07E-03
39	GO:0005740: mitochondrial envelope	3.41E-03
40	GO:0031307: integral component of mitochondrial outer membrane	4.13E-03
41	GO:0019013: viral nucleocapsid	4.50E-03
42	GO:0005743: mitochondrial inner membrane	4.56E-03
43	GO:0015935: small ribosomal subunit	7.00E-03
44	GO:0009532: plastid stroma	7.00E-03
45	GO:0005759: mitochondrial matrix	8.39E-03
46	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.40E-03
47	GO:0031965: nuclear membrane	1.09E-02
48	GO:0005774: vacuolar membrane	1.32E-02
49	GO:0010319: stromule	1.37E-02
50	GO:0030529: intracellular ribonucleoprotein complex	1.49E-02
51	GO:0022625: cytosolic large ribosomal subunit	1.87E-02
52	GO:0015934: large ribosomal subunit	1.99E-02
53	GO:0005737: cytoplasm	2.66E-02
54	GO:0009536: plastid	3.25E-02
55	GO:0005747: mitochondrial respiratory chain complex I	3.63E-02
56	GO:0016607: nuclear speck	3.63E-02
57	GO:0005732: small nucleolar ribonucleoprotein complex	4.30E-02
58	GO:0022626: cytosolic ribosome	4.44E-02
59	GO:0016020: membrane	4.63E-02