co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0007172: signal complex assembly	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:1905177: tracheary element differentiation	0.00E+00
9	GO:0071474: cellular hyperosmotic response	0.00E+00
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.08E-05
11	GO:0061077: chaperone-mediated protein folding	8.49E-05
12	GO:0010028: xanthophyll cycle	2.32E-04
13	GO:0010450: inflorescence meristem growth	2.32E-04
14	GO:0000025: maltose catabolic process	2.32E-04
15	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.32E-04
16	GO:0005980: glycogen catabolic process	2.32E-04
17	GO:0060261: positive regulation of transcription initiation from RNA polymerase II promoter	2.32E-04
18	GO:0015671: oxygen transport	2.32E-04
19	GO:0010480: microsporocyte differentiation	2.32E-04
20	GO:0032544: plastid translation	2.55E-04
21	GO:0015995: chlorophyll biosynthetic process	4.81E-04
22	GO:0009773: photosynthetic electron transport in photosystem I	4.97E-04
23	GO:0009735: response to cytokinin	5.09E-04
24	GO:0016122: xanthophyll metabolic process	5.15E-04
25	GO:0006521: regulation of cellular amino acid metabolic process	5.15E-04
26	GO:0051262: protein tetramerization	5.15E-04
27	GO:0031648: protein destabilization	5.15E-04
28	GO:0015979: photosynthesis	5.72E-04
29	GO:0009934: regulation of meristem structural organization	7.26E-04
30	GO:0045490: pectin catabolic process	8.29E-04
31	GO:0045165: cell fate commitment	8.37E-04
32	GO:0048281: inflorescence morphogenesis	8.37E-04
33	GO:0010623: programmed cell death involved in cell development	8.37E-04
34	GO:0080055: low-affinity nitrate transport	8.37E-04
35	GO:0016050: vesicle organization	8.37E-04
36	GO:0009944: polarity specification of adaxial/abaxial axis	9.95E-04
37	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.19E-03
38	GO:0010148: transpiration	1.19E-03
39	GO:0010306: rhamnogalacturonan II biosynthetic process	1.19E-03
40	GO:0010731: protein glutathionylation	1.19E-03
41	GO:1901332: negative regulation of lateral root development	1.19E-03
42	GO:0006412: translation	1.42E-03
43	GO:0019464: glycine decarboxylation via glycine cleavage system	1.59E-03
44	GO:0006109: regulation of carbohydrate metabolic process	1.59E-03
45	GO:0015994: chlorophyll metabolic process	1.59E-03
46	GO:0022622: root system development	1.59E-03
47	GO:0010600: regulation of auxin biosynthetic process	1.59E-03
48	GO:0006552: leucine catabolic process	1.59E-03
49	GO:0010508: positive regulation of autophagy	1.59E-03
50	GO:0006546: glycine catabolic process	1.59E-03
51	GO:0010021: amylopectin biosynthetic process	1.59E-03
52	GO:1902183: regulation of shoot apical meristem development	2.03E-03
53	GO:0010158: abaxial cell fate specification	2.03E-03
54	GO:0000304: response to singlet oxygen	2.03E-03
55	GO:0048497: maintenance of floral organ identity	2.03E-03
56	GO:0042549: photosystem II stabilization	2.50E-03
57	GO:0000470: maturation of LSU-rRNA	2.50E-03
58	GO:0009913: epidermal cell differentiation	2.50E-03
59	GO:0010190: cytochrome b6f complex assembly	2.50E-03
60	GO:0003006: developmental process involved in reproduction	2.50E-03
61	GO:0009955: adaxial/abaxial pattern specification	3.00E-03
62	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.00E-03
63	GO:0042026: protein refolding	3.00E-03
64	GO:1901259: chloroplast rRNA processing	3.00E-03
65	GO:0006458: 'de novo' protein folding	3.00E-03
66	GO:0010161: red light signaling pathway	3.54E-03
67	GO:0048437: floral organ development	3.54E-03
68	GO:0070370: cellular heat acclimation	3.54E-03
69	GO:0022904: respiratory electron transport chain	3.54E-03
70	GO:0010103: stomatal complex morphogenesis	3.54E-03
71	GO:0032880: regulation of protein localization	3.54E-03
72	GO:0010928: regulation of auxin mediated signaling pathway	4.10E-03
73	GO:0005978: glycogen biosynthetic process	4.10E-03
74	GO:0006353: DNA-templated transcription, termination	4.10E-03
75	GO:0009704: de-etiolation	4.10E-03
76	GO:0009409: response to cold	4.47E-03
77	GO:0010093: specification of floral organ identity	4.70E-03
78	GO:0001558: regulation of cell growth	4.70E-03
79	GO:0006810: transport	5.24E-03
80	GO:0019432: triglyceride biosynthetic process	5.32E-03
81	GO:0048507: meristem development	5.32E-03
82	GO:0051865: protein autoubiquitination	5.32E-03
83	GO:2000024: regulation of leaf development	5.32E-03
84	GO:0006783: heme biosynthetic process	5.32E-03
85	GO:0005982: starch metabolic process	5.97E-03
86	GO:0042761: very long-chain fatty acid biosynthetic process	5.97E-03
87	GO:0006782: protoporphyrinogen IX biosynthetic process	6.65E-03
88	GO:0048829: root cap development	6.65E-03
89	GO:0006631: fatty acid metabolic process	6.78E-03
90	GO:0019684: photosynthesis, light reaction	7.35E-03
91	GO:0009089: lysine biosynthetic process via diaminopimelate	7.35E-03
92	GO:0043085: positive regulation of catalytic activity	7.35E-03
93	GO:0048229: gametophyte development	7.35E-03
94	GO:0071365: cellular response to auxin stimulus	8.08E-03
95	GO:0005983: starch catabolic process	8.08E-03
96	GO:0010582: floral meristem determinacy	8.08E-03
97	GO:0042254: ribosome biogenesis	8.20E-03
98	GO:0010075: regulation of meristem growth	8.84E-03
99	GO:0006094: gluconeogenesis	8.84E-03
100	GO:2000012: regulation of auxin polar transport	8.84E-03
101	GO:0010102: lateral root morphogenesis	8.84E-03
102	GO:0006006: glucose metabolic process	8.84E-03
103	GO:0018107: peptidyl-threonine phosphorylation	8.84E-03
104	GO:0009266: response to temperature stimulus	9.62E-03
105	GO:0006302: double-strand break repair	9.62E-03
106	GO:0048467: gynoecium development	9.62E-03
107	GO:0009933: meristem structural organization	9.62E-03
108	GO:0010207: photosystem II assembly	9.62E-03
109	GO:0030154: cell differentiation	9.78E-03
110	GO:0010030: positive regulation of seed germination	1.04E-02
111	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.10E-02
112	GO:0010025: wax biosynthetic process	1.13E-02
113	GO:0006289: nucleotide-excision repair	1.21E-02
114	GO:0051302: regulation of cell division	1.30E-02
115	GO:0007017: microtubule-based process	1.30E-02
116	GO:0048511: rhythmic process	1.39E-02
117	GO:0019915: lipid storage	1.39E-02
118	GO:0031408: oxylipin biosynthetic process	1.39E-02
119	GO:0051321: meiotic cell cycle	1.39E-02
120	GO:0003333: amino acid transmembrane transport	1.39E-02
121	GO:0019748: secondary metabolic process	1.48E-02
122	GO:0030245: cellulose catabolic process	1.48E-02
123	GO:0010017: red or far-red light signaling pathway	1.48E-02
124	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.48E-02
125	GO:0006869: lipid transport	1.49E-02
126	GO:0009686: gibberellin biosynthetic process	1.57E-02
127	GO:0001944: vasculature development	1.57E-02
128	GO:0032259: methylation	1.64E-02
129	GO:0010089: xylem development	1.67E-02
130	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.77E-02
131	GO:0008284: positive regulation of cell proliferation	1.77E-02
132	GO:0048653: anther development	1.87E-02
133	GO:0042631: cellular response to water deprivation	1.87E-02
134	GO:0009960: endosperm development	1.97E-02
135	GO:0010154: fruit development	1.97E-02
136	GO:0009958: positive gravitropism	1.97E-02
137	GO:0006662: glycerol ether metabolic process	1.97E-02
138	GO:0048868: pollen tube development	1.97E-02
139	GO:0042752: regulation of circadian rhythm	2.07E-02
140	GO:0009646: response to absence of light	2.07E-02
141	GO:0048825: cotyledon development	2.18E-02
142	GO:0019252: starch biosynthetic process	2.18E-02
143	GO:0032502: developmental process	2.40E-02
144	GO:1901657: glycosyl compound metabolic process	2.51E-02
145	GO:0071281: cellular response to iron ion	2.51E-02
146	GO:0009734: auxin-activated signaling pathway	2.66E-02
147	GO:0042742: defense response to bacterium	2.75E-02
148	GO:0010027: thylakoid membrane organization	2.98E-02
149	GO:0009607: response to biotic stimulus	3.10E-02
150	GO:0009627: systemic acquired resistance	3.22E-02
151	GO:0009817: defense response to fungus, incompatible interaction	3.59E-02
152	GO:0009658: chloroplast organization	3.79E-02
153	GO:0006499: N-terminal protein myristoylation	3.85E-02
154	GO:0009631: cold acclimation	3.98E-02
155	GO:0048527: lateral root development	3.98E-02
156	GO:0006970: response to osmotic stress	4.08E-02
157	GO:0006865: amino acid transport	4.12E-02
158	GO:0034599: cellular response to oxidative stress	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0009899: ent-kaurene synthase activity	0.00E+00
6	GO:0030570: pectate lyase activity	4.10E-06
7	GO:0019843: rRNA binding	4.99E-06
8	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.78E-05
9	GO:0005344: oxygen transporter activity	2.32E-04
10	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.32E-04
11	GO:0005227: calcium activated cation channel activity	2.32E-04
12	GO:0008184: glycogen phosphorylase activity	2.32E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.32E-04
14	GO:0004853: uroporphyrinogen decarboxylase activity	2.32E-04
15	GO:0004134: 4-alpha-glucanotransferase activity	2.32E-04
16	GO:0004645: phosphorylase activity	2.32E-04
17	GO:0048038: quinone binding	2.37E-04
18	GO:0003735: structural constituent of ribosome	3.06E-04
19	GO:0044183: protein binding involved in protein folding	4.97E-04
20	GO:0016868: intramolecular transferase activity, phosphotransferases	5.15E-04
21	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	5.15E-04
22	GO:0018708: thiol S-methyltransferase activity	5.15E-04
23	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.15E-04
24	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.15E-04
25	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.37E-04
26	GO:0043169: cation binding	8.37E-04
27	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.37E-04
28	GO:0005528: FK506 binding	9.95E-04
29	GO:0043621: protein self-association	1.12E-03
30	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.19E-03
31	GO:0016851: magnesium chelatase activity	1.19E-03
32	GO:0043023: ribosomal large subunit binding	1.19E-03
33	GO:0033612: receptor serine/threonine kinase binding	1.20E-03
34	GO:0010328: auxin influx transmembrane transporter activity	1.59E-03
35	GO:0019199: transmembrane receptor protein kinase activity	1.59E-03
36	GO:0042277: peptide binding	1.59E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	2.50E-03
38	GO:0051920: peroxiredoxin activity	3.00E-03
39	GO:0005261: cation channel activity	3.00E-03
40	GO:0016829: lyase activity	3.37E-03
41	GO:0016209: antioxidant activity	4.10E-03
42	GO:0004033: aldo-keto reductase (NADP) activity	4.10E-03
43	GO:0008289: lipid binding	6.62E-03
44	GO:0008047: enzyme activator activity	6.65E-03
45	GO:0015020: glucuronosyltransferase activity	6.65E-03
46	GO:0004185: serine-type carboxypeptidase activity	7.36E-03
47	GO:0008168: methyltransferase activity	7.63E-03
48	GO:0051537: 2 iron, 2 sulfur cluster binding	7.96E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.59E-03
50	GO:0005515: protein binding	8.75E-03
51	GO:0008083: growth factor activity	9.62E-03
52	GO:0004857: enzyme inhibitor activity	1.21E-02
53	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.21E-02
54	GO:0016491: oxidoreductase activity	1.36E-02
55	GO:0008408: 3'-5' exonuclease activity	1.39E-02
56	GO:0008810: cellulase activity	1.57E-02
57	GO:0047134: protein-disulfide reductase activity	1.77E-02
58	GO:0009055: electron carrier activity	1.89E-02
59	GO:0001085: RNA polymerase II transcription factor binding	1.97E-02
60	GO:0003713: transcription coactivator activity	1.97E-02
61	GO:0004791: thioredoxin-disulfide reductase activity	2.07E-02
62	GO:0043565: sequence-specific DNA binding	2.34E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.51E-02
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.74E-02
65	GO:0005200: structural constituent of cytoskeleton	2.74E-02
66	GO:0016597: amino acid binding	2.86E-02
67	GO:0102483: scopolin beta-glucosidase activity	3.34E-02
68	GO:0030145: manganese ion binding	3.98E-02
69	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.98E-02
70	GO:0008422: beta-glucosidase activity	4.53E-02
71	GO:0051539: 4 iron, 4 sulfur cluster binding	4.67E-02
72	GO:0004364: glutathione transferase activity	4.95E-02
73	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009507: chloroplast	9.09E-18
4	GO:0009535: chloroplast thylakoid membrane	6.43E-16
5	GO:0009570: chloroplast stroma	3.47E-14
6	GO:0009534: chloroplast thylakoid	2.00E-11
7	GO:0009941: chloroplast envelope	4.20E-09
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.68E-08
9	GO:0009579: thylakoid	5.03E-07
10	GO:0009543: chloroplast thylakoid lumen	4.99E-06
11	GO:0005840: ribosome	2.01E-04
12	GO:0009501: amyloplast	2.06E-04
13	GO:0009538: photosystem I reaction center	2.06E-04
14	GO:0000791: euchromatin	2.32E-04
15	GO:0030870: Mre11 complex	5.15E-04
16	GO:0030095: chloroplast photosystem II	7.26E-04
17	GO:0010007: magnesium chelatase complex	8.37E-04
18	GO:0031977: thylakoid lumen	9.15E-04
19	GO:0009654: photosystem II oxygen evolving complex	1.09E-03
20	GO:0005960: glycine cleavage complex	1.19E-03
21	GO:0015935: small ribosomal subunit	1.20E-03
22	GO:0000795: synaptonemal complex	2.03E-03
23	GO:0019898: extrinsic component of membrane	2.24E-03
24	GO:0010287: plastoglobule	2.85E-03
25	GO:0010319: stromule	3.08E-03
26	GO:0009295: nucleoid	3.08E-03
27	GO:0005667: transcription factor complex	3.86E-03
28	GO:0031305: integral component of mitochondrial inner membrane	4.10E-03
29	GO:0005763: mitochondrial small ribosomal subunit	5.32E-03
30	GO:0045298: tubulin complex	5.32E-03
31	GO:0005740: mitochondrial envelope	6.65E-03
32	GO:0009508: plastid chromosome	8.84E-03
33	GO:0043234: protein complex	1.13E-02
34	GO:0042651: thylakoid membrane	1.30E-02
35	GO:0009706: chloroplast inner membrane	1.42E-02
36	GO:0000785: chromatin	2.40E-02
37	GO:0048046: apoplast	2.98E-02
38	GO:0000325: plant-type vacuole	3.98E-02
39	GO:0015934: large ribosomal subunit	3.98E-02
40	GO:0005874: microtubule	4.53E-02