co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010046: response to mycotoxin	0.00E+00
2	GO:0009560: embryo sac egg cell differentiation	0.00E+00
3	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
4	GO:2000070: regulation of response to water deprivation	5.73E-05
5	GO:0006562: proline catabolic process	1.00E-04
6	GO:0050691: regulation of defense response to virus by host	1.00E-04
7	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.00E-04
8	GO:0009966: regulation of signal transduction	1.00E-04
9	GO:0015853: adenine transport	1.00E-04
10	GO:0015854: guanine transport	1.00E-04
11	GO:0080148: negative regulation of response to water deprivation	2.36E-04
12	GO:0046939: nucleotide phosphorylation	2.36E-04
13	GO:0010155: regulation of proton transport	2.36E-04
14	GO:0010133: proline catabolic process to glutamate	2.36E-04
15	GO:0006611: protein export from nucleus	2.36E-04
16	GO:0010372: positive regulation of gibberellin biosynthetic process	2.36E-04
17	GO:2000030: regulation of response to red or far red light	2.36E-04
18	GO:0009225: nucleotide-sugar metabolic process	2.60E-04
19	GO:0009738: abscisic acid-activated signaling pathway	2.89E-04
20	GO:0009611: response to wounding	3.20E-04
21	GO:0080168: abscisic acid transport	3.92E-04
22	GO:0051176: positive regulation of sulfur metabolic process	3.92E-04
23	GO:0000055: ribosomal large subunit export from nucleus	3.92E-04
24	GO:0010366: negative regulation of ethylene biosynthetic process	3.92E-04
25	GO:0010447: response to acidic pH	3.92E-04
26	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	3.92E-04
27	GO:0009686: gibberellin biosynthetic process	4.69E-04
28	GO:0006537: glutamate biosynthetic process	5.64E-04
29	GO:0033014: tetrapyrrole biosynthetic process	5.64E-04
30	GO:0030100: regulation of endocytosis	5.64E-04
31	GO:0010107: potassium ion import	7.50E-04
32	GO:0001709: cell fate determination	7.50E-04
33	GO:0009694: jasmonic acid metabolic process	7.50E-04
34	GO:0015743: malate transport	7.50E-04
35	GO:0045227: capsule polysaccharide biosynthetic process	7.50E-04
36	GO:0033320: UDP-D-xylose biosynthetic process	7.50E-04
37	GO:0006536: glutamate metabolic process	7.50E-04
38	GO:0033358: UDP-L-arabinose biosynthetic process	7.50E-04
39	GO:0006090: pyruvate metabolic process	9.47E-04
40	GO:0030041: actin filament polymerization	9.47E-04
41	GO:0007029: endoplasmic reticulum organization	9.47E-04
42	GO:0009435: NAD biosynthetic process	9.47E-04
43	GO:0009164: nucleoside catabolic process	9.47E-04
44	GO:0045487: gibberellin catabolic process	9.47E-04
45	GO:0006796: phosphate-containing compound metabolic process	1.16E-03
46	GO:0010337: regulation of salicylic acid metabolic process	1.16E-03
47	GO:0006014: D-ribose metabolic process	1.16E-03
48	GO:0042732: D-xylose metabolic process	1.16E-03
49	GO:0048317: seed morphogenesis	1.16E-03
50	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.38E-03
51	GO:0010044: response to aluminum ion	1.62E-03
52	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.62E-03
53	GO:0006401: RNA catabolic process	1.62E-03
54	GO:0006955: immune response	1.62E-03
55	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.62E-03
56	GO:0006402: mRNA catabolic process	1.87E-03
57	GO:0009850: auxin metabolic process	1.87E-03
58	GO:0009690: cytokinin metabolic process	1.87E-03
59	GO:0045010: actin nucleation	1.87E-03
60	GO:1900150: regulation of defense response to fungus	1.87E-03
61	GO:0006970: response to osmotic stress	2.01E-03
62	GO:0010208: pollen wall assembly	2.14E-03
63	GO:0051707: response to other organism	2.32E-03
64	GO:0046686: response to cadmium ion	2.34E-03
65	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.41E-03
66	GO:0006783: heme biosynthetic process	2.41E-03
67	GO:0009060: aerobic respiration	2.41E-03
68	GO:0046685: response to arsenic-containing substance	2.41E-03
69	GO:0010200: response to chitin	2.50E-03
70	GO:0008202: steroid metabolic process	2.70E-03
71	GO:0006779: porphyrin-containing compound biosynthetic process	2.70E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	3.00E-03
73	GO:0006364: rRNA processing	3.11E-03
74	GO:0010015: root morphogenesis	3.31E-03
75	GO:0071365: cellular response to auxin stimulus	3.63E-03
76	GO:0009408: response to heat	3.92E-03
77	GO:0006108: malate metabolic process	3.95E-03
78	GO:0009620: response to fungus	4.04E-03
79	GO:0034605: cellular response to heat	4.30E-03
80	GO:0002237: response to molecule of bacterial origin	4.30E-03
81	GO:0010167: response to nitrate	4.64E-03
82	GO:0009742: brassinosteroid mediated signaling pathway	4.68E-03
83	GO:0042753: positive regulation of circadian rhythm	5.00E-03
84	GO:0006863: purine nucleobase transport	5.00E-03
85	GO:2000377: regulation of reactive oxygen species metabolic process	5.37E-03
86	GO:0009863: salicylic acid mediated signaling pathway	5.37E-03
87	GO:0009873: ethylene-activated signaling pathway	5.42E-03
88	GO:0043622: cortical microtubule organization	5.75E-03
89	GO:0051260: protein homooligomerization	6.14E-03
90	GO:0061077: chaperone-mediated protein folding	6.14E-03
91	GO:0009269: response to desiccation	6.14E-03
92	GO:0016226: iron-sulfur cluster assembly	6.54E-03
93	GO:0030433: ubiquitin-dependent ERAD pathway	6.54E-03
94	GO:0031348: negative regulation of defense response	6.54E-03
95	GO:0006012: galactose metabolic process	6.94E-03
96	GO:0009306: protein secretion	7.35E-03
97	GO:0019722: calcium-mediated signaling	7.35E-03
98	GO:0009409: response to cold	7.48E-03
99	GO:0010118: stomatal movement	8.21E-03
100	GO:0048868: pollen tube development	8.65E-03
101	GO:0009960: endosperm development	8.65E-03
102	GO:0006470: protein dephosphorylation	8.71E-03
103	GO:0048544: recognition of pollen	9.10E-03
104	GO:0042752: regulation of circadian rhythm	9.10E-03
105	GO:0009749: response to glucose	9.56E-03
106	GO:0019252: starch biosynthetic process	9.56E-03
107	GO:0010193: response to ozone	1.00E-02
108	GO:0031047: gene silencing by RNA	1.05E-02
109	GO:1901657: glycosyl compound metabolic process	1.10E-02
110	GO:0009639: response to red or far red light	1.15E-02
111	GO:0007267: cell-cell signaling	1.20E-02
112	GO:0010286: heat acclimation	1.20E-02
113	GO:0001666: response to hypoxia	1.30E-02
114	GO:0009615: response to virus	1.30E-02
115	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.35E-02
116	GO:0009816: defense response to bacterium, incompatible interaction	1.35E-02
117	GO:0009627: systemic acquired resistance	1.40E-02
118	GO:0015995: chlorophyll biosynthetic process	1.46E-02
119	GO:0080167: response to karrikin	1.47E-02
120	GO:0009737: response to abscisic acid	1.48E-02
121	GO:0008219: cell death	1.57E-02
122	GO:0010311: lateral root formation	1.62E-02
123	GO:0009834: plant-type secondary cell wall biogenesis	1.68E-02
124	GO:0010119: regulation of stomatal movement	1.74E-02
125	GO:0016051: carbohydrate biosynthetic process	1.86E-02
126	GO:0009637: response to blue light	1.86E-02
127	GO:0006897: endocytosis	2.10E-02
128	GO:0006952: defense response	2.12E-02
129	GO:0009640: photomorphogenesis	2.22E-02
130	GO:0009644: response to high light intensity	2.35E-02
131	GO:0008152: metabolic process	2.39E-02
132	GO:0009636: response to toxic substance	2.41E-02
133	GO:0050832: defense response to fungus	2.43E-02
134	GO:0006855: drug transmembrane transport	2.48E-02
135	GO:0031347: regulation of defense response	2.55E-02
136	GO:0009585: red, far-red light phototransduction	2.75E-02
137	GO:0010224: response to UV-B	2.81E-02
138	GO:0009651: response to salt stress	2.91E-02
139	GO:0009626: plant-type hypersensitive response	3.24E-02
140	GO:0009553: embryo sac development	3.46E-02
141	GO:0009624: response to nematode	3.53E-02
142	GO:0006468: protein phosphorylation	3.69E-02
143	GO:0000398: mRNA splicing, via spliceosome	3.91E-02
144	GO:0009058: biosynthetic process	4.30E-02
145	GO:0009845: seed germination	4.38E-02
146	GO:0006633: fatty acid biosynthetic process	4.87E-02
147	GO:0006457: protein folding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030621: U4 snRNA binding	0.00E+00
2	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
3	GO:0070566: adenylyltransferase activity	0.00E+00
4	GO:0008987: quinolinate synthetase A activity	0.00E+00
5	GO:0102425: myricetin 3-O-glucosyltransferase activity	4.38E-05
6	GO:0102360: daphnetin 3-O-glucosyltransferase activity	4.38E-05
7	GO:0047893: flavonol 3-O-glucosyltransferase activity	5.73E-05
8	GO:0004657: proline dehydrogenase activity	1.00E-04
9	GO:0030544: Hsp70 protein binding	1.00E-04
10	GO:0090440: abscisic acid transporter activity	1.00E-04
11	GO:0019888: protein phosphatase regulator activity	2.03E-04
12	GO:0008883: glutamyl-tRNA reductase activity	2.36E-04
13	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	3.92E-04
14	GO:0035251: UDP-glucosyltransferase activity	3.94E-04
15	GO:0043023: ribosomal large subunit binding	5.64E-04
16	GO:0004351: glutamate decarboxylase activity	5.64E-04
17	GO:0019201: nucleotide kinase activity	5.64E-04
18	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	5.64E-04
19	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.64E-04
20	GO:0004470: malic enzyme activity	7.50E-04
21	GO:0005253: anion channel activity	7.50E-04
22	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	7.50E-04
23	GO:0050373: UDP-arabinose 4-epimerase activity	7.50E-04
24	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.50E-04
25	GO:0047631: ADP-ribose diphosphatase activity	9.47E-04
26	GO:0002020: protease binding	9.47E-04
27	GO:0017070: U6 snRNA binding	9.47E-04
28	GO:0008948: oxaloacetate decarboxylase activity	9.47E-04
29	GO:0000210: NAD+ diphosphatase activity	1.16E-03
30	GO:0016462: pyrophosphatase activity	1.16E-03
31	GO:0048040: UDP-glucuronate decarboxylase activity	1.16E-03
32	GO:0004017: adenylate kinase activity	1.38E-03
33	GO:0019900: kinase binding	1.38E-03
34	GO:0070403: NAD+ binding	1.38E-03
35	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.38E-03
36	GO:0004747: ribokinase activity	1.38E-03
37	GO:0003978: UDP-glucose 4-epimerase activity	1.38E-03
38	GO:0019899: enzyme binding	1.62E-03
39	GO:0004143: diacylglycerol kinase activity	1.62E-03
40	GO:0004427: inorganic diphosphatase activity	1.62E-03
41	GO:0015140: malate transmembrane transporter activity	1.62E-03
42	GO:0008865: fructokinase activity	1.87E-03
43	GO:0003951: NAD+ kinase activity	2.14E-03
44	GO:0008142: oxysterol binding	2.14E-03
45	GO:0008047: enzyme activator activity	3.00E-03
46	GO:0000175: 3'-5'-exoribonuclease activity	3.95E-03
47	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.04E-03
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.04E-03
49	GO:0046872: metal ion binding	4.61E-03
50	GO:0016758: transferase activity, transferring hexosyl groups	5.37E-03
51	GO:0005345: purine nucleobase transmembrane transporter activity	5.75E-03
52	GO:0004540: ribonuclease activity	6.14E-03
53	GO:0008194: UDP-glycosyltransferase activity	8.52E-03
54	GO:0008536: Ran GTPase binding	8.65E-03
55	GO:0004518: nuclease activity	1.05E-02
56	GO:0102483: scopolin beta-glucosidase activity	1.46E-02
57	GO:0015238: drug transmembrane transporter activity	1.62E-02
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.74E-02
59	GO:0005509: calcium ion binding	1.79E-02
60	GO:0004722: protein serine/threonine phosphatase activity	1.93E-02
61	GO:0008422: beta-glucosidase activity	1.97E-02
62	GO:0050661: NADP binding	2.03E-02
63	GO:0051539: 4 iron, 4 sulfur cluster binding	2.03E-02
64	GO:0003824: catalytic activity	2.23E-02
65	GO:0005524: ATP binding	2.26E-02
66	GO:0035091: phosphatidylinositol binding	2.35E-02
67	GO:0051287: NAD binding	2.55E-02
68	GO:0031625: ubiquitin protein ligase binding	2.95E-02
69	GO:0004842: ubiquitin-protein transferase activity	2.98E-02
70	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.03E-02
71	GO:0003729: mRNA binding	3.26E-02
72	GO:0016874: ligase activity	3.38E-02
73	GO:0022857: transmembrane transporter activity	3.38E-02
74	GO:0003779: actin binding	3.46E-02
75	GO:0051082: unfolded protein binding	3.53E-02
76	GO:0003677: DNA binding	4.43E-02
77	GO:0030170: pyridoxal phosphate binding	4.46E-02
78	GO:0008565: protein transporter activity	4.70E-02
79	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	1.00E-04
2	GO:0017053: transcriptional repressor complex	3.92E-04
3	GO:0005829: cytosol	6.78E-04
4	GO:0032580: Golgi cisterna membrane	9.40E-04
5	GO:0000178: exosome (RNase complex)	9.47E-04
6	GO:0000932: P-body	1.11E-03
7	GO:0016363: nuclear matrix	1.38E-03
8	GO:0046540: U4/U6 x U5 tri-snRNP complex	2.14E-03
9	GO:0010494: cytoplasmic stress granule	2.41E-03
10	GO:0090404: pollen tube tip	3.31E-03
11	GO:0048471: perinuclear region of cytoplasm	3.31E-03
12	GO:0000159: protein phosphatase type 2A complex	3.31E-03
13	GO:0005886: plasma membrane	3.81E-03
14	GO:0009506: plasmodesma	5.36E-03
15	GO:0005770: late endosome	8.65E-03
16	GO:0005788: endoplasmic reticulum lumen	1.35E-02
17	GO:0005643: nuclear pore	1.57E-02
18	GO:0005768: endosome	1.74E-02
19	GO:0031902: late endosome membrane	2.10E-02
20	GO:0090406: pollen tube	2.22E-02
21	GO:0043231: intracellular membrane-bounded organelle	2.39E-02
22	GO:0005635: nuclear envelope	2.88E-02
23	GO:0005681: spliceosomal complex	3.09E-02
24	GO:0016607: nuclear speck	3.17E-02
25	GO:0010008: endosome membrane	3.17E-02
26	GO:0005737: cytoplasm	3.55E-02
27	GO:0005634: nucleus	4.02E-02
28	GO:0009524: phragmoplast	4.30E-02