co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G25265

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006592: ornithine biosynthetic process	0.00E+00
2	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
5	GO:0006511: ubiquitin-dependent protein catabolic process	1.62E-11
6	GO:0006412: translation	1.59E-05
7	GO:0051603: proteolysis involved in cellular protein catabolic process	7.02E-05
8	GO:0000027: ribosomal large subunit assembly	1.50E-04
9	GO:0043248: proteasome assembly	1.70E-04
10	GO:0006457: protein folding	2.66E-04
11	GO:0000066: mitochondrial ornithine transport	3.47E-04
12	GO:2001006: regulation of cellulose biosynthetic process	3.47E-04
13	GO:0031468: nuclear envelope reassembly	3.47E-04
14	GO:0010265: SCF complex assembly	3.47E-04
15	GO:0000413: protein peptidyl-prolyl isomerization	3.53E-04
16	GO:0000028: ribosomal small subunit assembly	3.76E-04
17	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.95E-04
18	GO:0098656: anion transmembrane transport	5.52E-04
19	GO:0009245: lipid A biosynthetic process	5.52E-04
20	GO:0010267: production of ta-siRNAs involved in RNA interference	6.53E-04
21	GO:0006420: arginyl-tRNA aminoacylation	7.56E-04
22	GO:0016560: protein import into peroxisome matrix, docking	7.56E-04
23	GO:0051788: response to misfolded protein	7.56E-04
24	GO:1901703: protein localization involved in auxin polar transport	7.56E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	7.56E-04
26	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.56E-04
27	GO:0071668: plant-type cell wall assembly	7.56E-04
28	GO:0042254: ribosome biogenesis	9.10E-04
29	GO:0006820: anion transport	1.00E-03
30	GO:0000398: mRNA splicing, via spliceosome	1.10E-03
31	GO:0060145: viral gene silencing in virus induced gene silencing	1.22E-03
32	GO:0010452: histone H3-K36 methylation	1.22E-03
33	GO:0046168: glycerol-3-phosphate catabolic process	1.22E-03
34	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	1.22E-03
35	GO:1902626: assembly of large subunit precursor of preribosome	1.22E-03
36	GO:0008333: endosome to lysosome transport	1.22E-03
37	GO:1904278: positive regulation of wax biosynthetic process	1.22E-03
38	GO:0046417: chorismate metabolic process	1.22E-03
39	GO:0045793: positive regulation of cell size	1.22E-03
40	GO:0006760: folic acid-containing compound metabolic process	1.22E-03
41	GO:0010043: response to zinc ion	1.37E-03
42	GO:0051259: protein oligomerization	1.76E-03
43	GO:0006166: purine ribonucleoside salvage	1.76E-03
44	GO:0046653: tetrahydrofolate metabolic process	1.76E-03
45	GO:0045454: cell redox homeostasis	1.76E-03
46	GO:0006072: glycerol-3-phosphate metabolic process	1.76E-03
47	GO:0009647: skotomorphogenesis	1.76E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.76E-03
49	GO:0006168: adenine salvage	1.76E-03
50	GO:0006406: mRNA export from nucleus	1.76E-03
51	GO:0006289: nucleotide-excision repair	1.76E-03
52	GO:0001676: long-chain fatty acid metabolic process	1.76E-03
53	GO:0032877: positive regulation of DNA endoreduplication	1.76E-03
54	GO:0046836: glycolipid transport	1.76E-03
55	GO:0009793: embryo development ending in seed dormancy	2.21E-03
56	GO:0016226: iron-sulfur cluster assembly	2.33E-03
57	GO:0046686: response to cadmium ion	2.35E-03
58	GO:0015976: carbon utilization	2.37E-03
59	GO:0051781: positive regulation of cell division	2.37E-03
60	GO:0010387: COP9 signalosome assembly	2.37E-03
61	GO:0071249: cellular response to nitrate	2.37E-03
62	GO:0010363: regulation of plant-type hypersensitive response	2.37E-03
63	GO:0006221: pyrimidine nucleotide biosynthetic process	2.37E-03
64	GO:0006625: protein targeting to peroxisome	2.37E-03
65	GO:0044205: 'de novo' UMP biosynthetic process	2.37E-03
66	GO:0009755: hormone-mediated signaling pathway	2.37E-03
67	GO:0044209: AMP salvage	3.03E-03
68	GO:0036065: fucosylation	3.03E-03
69	GO:0051568: histone H3-K4 methylation	3.74E-03
70	GO:0034314: Arp2/3 complex-mediated actin nucleation	3.74E-03
71	GO:0006014: D-ribose metabolic process	3.74E-03
72	GO:0048825: cotyledon development	4.02E-03
73	GO:0009612: response to mechanical stimulus	4.50E-03
74	GO:0009554: megasporogenesis	4.50E-03
75	GO:0032880: regulation of protein localization	5.32E-03
76	GO:0048528: post-embryonic root development	5.32E-03
77	GO:0000338: protein deneddylation	5.32E-03
78	GO:0009396: folic acid-containing compound biosynthetic process	5.32E-03
79	GO:0006826: iron ion transport	5.32E-03
80	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	5.32E-03
81	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.32E-03
82	GO:0010286: heat acclimation	5.55E-03
83	GO:0009690: cytokinin metabolic process	6.17E-03
84	GO:0050821: protein stabilization	6.17E-03
85	GO:0031540: regulation of anthocyanin biosynthetic process	6.17E-03
86	GO:0016126: sterol biosynthetic process	6.23E-03
87	GO:0009808: lignin metabolic process	7.08E-03
88	GO:0022900: electron transport chain	7.08E-03
89	GO:0006526: arginine biosynthetic process	7.08E-03
90	GO:0010204: defense response signaling pathway, resistance gene-independent	7.08E-03
91	GO:0048589: developmental growth	8.04E-03
92	GO:0009060: aerobic respiration	8.04E-03
93	GO:0000387: spliceosomal snRNP assembly	9.03E-03
94	GO:0035999: tetrahydrofolate interconversion	9.03E-03
95	GO:0010449: root meristem growth	9.03E-03
96	GO:0007623: circadian rhythm	9.78E-03
97	GO:0009408: response to heat	9.90E-03
98	GO:0016441: posttranscriptional gene silencing	1.01E-02
99	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.01E-02
100	GO:0045087: innate immune response	1.03E-02
101	GO:0010015: root morphogenesis	1.12E-02
102	GO:0072593: reactive oxygen species metabolic process	1.12E-02
103	GO:0009073: aromatic amino acid family biosynthetic process	1.12E-02
104	GO:0048229: gametophyte development	1.12E-02
105	GO:0016485: protein processing	1.12E-02
106	GO:0006839: mitochondrial transport	1.18E-02
107	GO:0006631: fatty acid metabolic process	1.23E-02
108	GO:0010152: pollen maturation	1.23E-02
109	GO:0016925: protein sumoylation	1.23E-02
110	GO:0008283: cell proliferation	1.34E-02
111	GO:0010102: lateral root morphogenesis	1.34E-02
112	GO:0006626: protein targeting to mitochondrion	1.34E-02
113	GO:0009926: auxin polar transport	1.34E-02
114	GO:0048467: gynoecium development	1.46E-02
115	GO:0002237: response to molecule of bacterial origin	1.46E-02
116	GO:0010020: chloroplast fission	1.46E-02
117	GO:0007015: actin filament organization	1.46E-02
118	GO:0009965: leaf morphogenesis	1.50E-02
119	GO:0009969: xyloglucan biosynthetic process	1.59E-02
120	GO:0007031: peroxisome organization	1.59E-02
121	GO:0007030: Golgi organization	1.59E-02
122	GO:0010039: response to iron ion	1.59E-02
123	GO:0034976: response to endoplasmic reticulum stress	1.71E-02
124	GO:0042753: positive regulation of circadian rhythm	1.71E-02
125	GO:0006486: protein glycosylation	1.81E-02
126	GO:0009116: nucleoside metabolic process	1.85E-02
127	GO:0010073: meristem maintenance	1.98E-02
128	GO:0016575: histone deacetylation	1.98E-02
129	GO:0009908: flower development	2.02E-02
130	GO:0010431: seed maturation	2.12E-02
131	GO:0061077: chaperone-mediated protein folding	2.12E-02
132	GO:0007005: mitochondrion organization	2.26E-02
133	GO:0080092: regulation of pollen tube growth	2.26E-02
134	GO:0006012: galactose metabolic process	2.40E-02
135	GO:0009294: DNA mediated transformation	2.40E-02
136	GO:0016569: covalent chromatin modification	2.42E-02
137	GO:0048443: stamen development	2.55E-02
138	GO:0042147: retrograde transport, endosome to Golgi	2.70E-02
139	GO:0051726: regulation of cell cycle	2.73E-02
140	GO:0015991: ATP hydrolysis coupled proton transport	2.85E-02
141	GO:0080022: primary root development	2.85E-02
142	GO:0010051: xylem and phloem pattern formation	2.85E-02
143	GO:0008360: regulation of cell shape	3.01E-02
144	GO:0010154: fruit development	3.01E-02
145	GO:0006662: glycerol ether metabolic process	3.01E-02
146	GO:0010182: sugar mediated signaling pathway	3.01E-02
147	GO:0061025: membrane fusion	3.17E-02
148	GO:0010183: pollen tube guidance	3.33E-02
149	GO:0009749: response to glucose	3.33E-02
150	GO:0009556: microsporogenesis	3.33E-02
151	GO:0032259: methylation	3.44E-02
152	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.50E-02
153	GO:0010193: response to ozone	3.50E-02
154	GO:0009630: gravitropism	3.67E-02
155	GO:0031047: gene silencing by RNA	3.67E-02
156	GO:0048364: root development	3.83E-02
157	GO:0030163: protein catabolic process	3.84E-02
158	GO:0010090: trichome morphogenesis	3.84E-02
159	GO:0006633: fatty acid biosynthetic process	4.04E-02
160	GO:0051607: defense response to virus	4.36E-02
161	GO:0000910: cytokinesis	4.36E-02
162	GO:0006810: transport	4.43E-02
163	GO:0010029: regulation of seed germination	4.73E-02
164	GO:0009627: systemic acquired resistance	4.91E-02
165	GO:0006974: cellular response to DNA damage stimulus	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0030272: 5-formyltetrahydrofolate cyclo-ligase activity	0.00E+00
2	GO:0004151: dihydroorotase activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	9.26E-26
6	GO:0008233: peptidase activity	1.94E-14
7	GO:0003735: structural constituent of ribosome	3.68E-08
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.71E-05
9	GO:0010011: auxin binding	7.53E-05
10	GO:0031177: phosphopantetheine binding	1.70E-04
11	GO:0000035: acyl binding	2.30E-04
12	GO:0035614: snRNA stem-loop binding	3.47E-04
13	GO:0000824: inositol tetrakisphosphate 3-kinase activity	3.47E-04
14	GO:0047326: inositol tetrakisphosphate 5-kinase activity	3.47E-04
15	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	3.47E-04
16	GO:0030544: Hsp70 protein binding	3.47E-04
17	GO:0003838: sterol 24-C-methyltransferase activity	3.47E-04
18	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	3.47E-04
19	GO:0015288: porin activity	3.76E-04
20	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.76E-04
21	GO:0008308: voltage-gated anion channel activity	4.61E-04
22	GO:0004814: arginine-tRNA ligase activity	7.56E-04
23	GO:0000064: L-ornithine transmembrane transporter activity	7.56E-04
24	GO:0004106: chorismate mutase activity	7.56E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	7.56E-04
26	GO:0030619: U1 snRNA binding	7.56E-04
27	GO:0052692: raffinose alpha-galactosidase activity	1.22E-03
28	GO:0008430: selenium binding	1.22E-03
29	GO:0005047: signal recognition particle binding	1.22E-03
30	GO:0004557: alpha-galactosidase activity	1.22E-03
31	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.22E-03
32	GO:0008097: 5S rRNA binding	1.76E-03
33	GO:0017089: glycolipid transporter activity	1.76E-03
34	GO:0043130: ubiquitin binding	1.76E-03
35	GO:0000254: C-4 methylsterol oxidase activity	1.76E-03
36	GO:0003999: adenine phosphoribosyltransferase activity	1.76E-03
37	GO:0000166: nucleotide binding	1.98E-03
38	GO:0051861: glycolipid binding	2.37E-03
39	GO:0070628: proteasome binding	2.37E-03
40	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.37E-03
41	GO:0031386: protein tag	3.03E-03
42	GO:0031593: polyubiquitin binding	3.74E-03
43	GO:0051117: ATPase binding	3.74E-03
44	GO:0102391: decanoate--CoA ligase activity	4.50E-03
45	GO:0004747: ribokinase activity	4.50E-03
46	GO:0019887: protein kinase regulator activity	4.50E-03
47	GO:0022857: transmembrane transporter activity	4.51E-03
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.91E-03
49	GO:0015035: protein disulfide oxidoreductase activity	5.05E-03
50	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	5.32E-03
51	GO:0008235: metalloexopeptidase activity	5.32E-03
52	GO:0042162: telomeric DNA binding	5.32E-03
53	GO:0008143: poly(A) binding	5.32E-03
54	GO:0004467: long-chain fatty acid-CoA ligase activity	5.32E-03
55	GO:0008237: metallopeptidase activity	5.55E-03
56	GO:0035064: methylated histone binding	6.17E-03
57	GO:0004034: aldose 1-epimerase activity	6.17E-03
58	GO:0008375: acetylglucosaminyltransferase activity	6.96E-03
59	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.08E-03
60	GO:0008417: fucosyltransferase activity	8.04E-03
61	GO:0000989: transcription factor activity, transcription factor binding	8.04E-03
62	GO:0050897: cobalt ion binding	9.43E-03
63	GO:0008047: enzyme activator activity	1.01E-02
64	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.12E-02
65	GO:0004129: cytochrome-c oxidase activity	1.12E-02
66	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.12E-02
67	GO:0008794: arsenate reductase (glutaredoxin) activity	1.12E-02
68	GO:0008327: methyl-CpG binding	1.12E-02
69	GO:0004177: aminopeptidase activity	1.12E-02
70	GO:0008378: galactosyltransferase activity	1.23E-02
71	GO:0000049: tRNA binding	1.23E-02
72	GO:0004089: carbonate dehydratase activity	1.34E-02
73	GO:0031072: heat shock protein binding	1.34E-02
74	GO:0003725: double-stranded RNA binding	1.34E-02
75	GO:0004175: endopeptidase activity	1.46E-02
76	GO:0003729: mRNA binding	1.71E-02
77	GO:0004407: histone deacetylase activity	1.85E-02
78	GO:0005528: FK506 binding	1.85E-02
79	GO:0003714: transcription corepressor activity	1.85E-02
80	GO:0004540: ribonuclease activity	2.12E-02
81	GO:0008514: organic anion transmembrane transporter activity	2.55E-02
82	GO:0003756: protein disulfide isomerase activity	2.55E-02
83	GO:0005102: receptor binding	2.70E-02
84	GO:0047134: protein-disulfide reductase activity	2.70E-02
85	GO:0004791: thioredoxin-disulfide reductase activity	3.17E-02
86	GO:0004872: receptor activity	3.33E-02
87	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.50E-02
88	GO:0051015: actin filament binding	3.84E-02
89	GO:0008565: protein transporter activity	3.85E-02
90	GO:0009055: electron carrier activity	3.96E-02
91	GO:0003684: damaged DNA binding	4.01E-02
92	GO:0005515: protein binding	4.24E-02
93	GO:0016597: amino acid binding	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0005839: proteasome core complex	9.26E-26
4	GO:0000502: proteasome complex	6.37E-25
5	GO:0019773: proteasome core complex, alpha-subunit complex	1.72E-16
6	GO:0005829: cytosol	3.52E-16
7	GO:0022626: cytosolic ribosome	2.21E-10
8	GO:0005737: cytoplasm	3.80E-08
9	GO:0022625: cytosolic large ribosomal subunit	4.90E-08
10	GO:0005840: ribosome	2.84E-07
11	GO:0005774: vacuolar membrane	6.94E-06
12	GO:0005773: vacuole	1.77E-05
13	GO:0005730: nucleolus	9.03E-05
14	GO:0005662: DNA replication factor A complex	3.47E-04
15	GO:1990429: peroxisomal importomer complex	3.47E-04
16	GO:0019774: proteasome core complex, beta-subunit complex	3.47E-04
17	GO:0046930: pore complex	4.61E-04
18	GO:0071011: precatalytic spliceosome	6.53E-04
19	GO:0005697: telomerase holoenzyme complex	7.56E-04
20	GO:0008541: proteasome regulatory particle, lid subcomplex	8.76E-04
21	GO:0071013: catalytic step 2 spliceosome	8.76E-04
22	GO:0005732: small nucleolar ribonucleoprotein complex	1.01E-03
23	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.03E-03
24	GO:0000439: core TFIIH complex	1.22E-03
25	GO:0046861: glyoxysomal membrane	1.22E-03
26	GO:0005838: proteasome regulatory particle	1.22E-03
27	GO:0005853: eukaryotic translation elongation factor 1 complex	1.22E-03
28	GO:0005956: protein kinase CK2 complex	1.76E-03
29	GO:0033180: proton-transporting V-type ATPase, V1 domain	1.76E-03
30	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.76E-03
31	GO:1990726: Lsm1-7-Pat1 complex	1.76E-03
32	GO:0070469: respiratory chain	1.94E-03
33	GO:0005741: mitochondrial outer membrane	2.13E-03
34	GO:0016593: Cdc73/Paf1 complex	2.37E-03
35	GO:0000445: THO complex part of transcription export complex	2.37E-03
36	GO:0005746: mitochondrial respiratory chain	3.03E-03
37	GO:0005783: endoplasmic reticulum	3.15E-03
38	GO:0030904: retromer complex	3.74E-03
39	GO:0000974: Prp19 complex	3.74E-03
40	GO:0005771: multivesicular body	3.74E-03
41	GO:0005885: Arp2/3 protein complex	4.50E-03
42	GO:0000347: THO complex	5.32E-03
43	GO:0005688: U6 snRNP	6.17E-03
44	GO:0005788: endoplasmic reticulum lumen	6.59E-03
45	GO:0005794: Golgi apparatus	6.77E-03
46	GO:0009514: glyoxysome	7.08E-03
47	GO:0046540: U4/U6 x U5 tri-snRNP complex	7.08E-03
48	GO:0005763: mitochondrial small ribosomal subunit	8.04E-03
49	GO:0005685: U1 snRNP	8.04E-03
50	GO:0008180: COP9 signalosome	8.04E-03
51	GO:0005759: mitochondrial matrix	8.67E-03
52	GO:0019013: viral nucleocapsid	1.34E-02
53	GO:0009508: plastid chromosome	1.34E-02
54	GO:0005769: early endosome	1.71E-02
55	GO:0005758: mitochondrial intermembrane space	1.85E-02
56	GO:0005834: heterotrimeric G-protein complex	2.28E-02
57	GO:0009706: chloroplast inner membrane	2.57E-02
58	GO:0005743: mitochondrial inner membrane	3.32E-02
59	GO:0005739: mitochondrion	3.95E-02
60	GO:0032580: Golgi cisterna membrane	4.01E-02
61	GO:0009295: nucleoid	4.19E-02
62	GO:0005778: peroxisomal membrane	4.19E-02
63	GO:0000932: P-body	4.55E-02