GO Enrichment Analysis of Co-expressed Genes with
AT5G24840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 3 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 6 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 7 | GO:0006412: translation | 4.43E-21 |
| 8 | GO:0006364: rRNA processing | 5.75E-13 |
| 9 | GO:0042254: ribosome biogenesis | 8.81E-09 |
| 10 | GO:0010162: seed dormancy process | 3.49E-06 |
| 11 | GO:0042273: ribosomal large subunit biogenesis | 1.33E-05 |
| 12 | GO:0000470: maturation of LSU-rRNA | 3.28E-05 |
| 13 | GO:0009553: embryo sac development | 7.75E-05 |
| 14 | GO:0043985: histone H4-R3 methylation | 1.25E-04 |
| 15 | GO:1990258: histone glutamine methylation | 1.25E-04 |
| 16 | GO:0031120: snRNA pseudouridine synthesis | 1.25E-04 |
| 17 | GO:0000469: cleavage involved in rRNA processing | 1.25E-04 |
| 18 | GO:0031118: rRNA pseudouridine synthesis | 1.25E-04 |
| 19 | GO:0030490: maturation of SSU-rRNA | 1.25E-04 |
| 20 | GO:0000494: box C/D snoRNA 3'-end processing | 1.25E-04 |
| 21 | GO:0006626: protein targeting to mitochondrion | 2.77E-04 |
| 22 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.90E-04 |
| 23 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 2.90E-04 |
| 24 | GO:0045041: protein import into mitochondrial intermembrane space | 2.90E-04 |
| 25 | GO:0034470: ncRNA processing | 2.90E-04 |
| 26 | GO:0048569: post-embryonic animal organ development | 2.90E-04 |
| 27 | GO:0009967: positive regulation of signal transduction | 2.90E-04 |
| 28 | GO:0000027: ribosomal large subunit assembly | 4.36E-04 |
| 29 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.36E-04 |
| 30 | GO:0045039: protein import into mitochondrial inner membrane | 4.78E-04 |
| 31 | GO:0007005: mitochondrion organization | 5.76E-04 |
| 32 | GO:0009294: DNA mediated transformation | 6.28E-04 |
| 33 | GO:0006164: purine nucleotide biosynthetic process | 6.85E-04 |
| 34 | GO:0009855: determination of bilateral symmetry | 6.85E-04 |
| 35 | GO:0051131: chaperone-mediated protein complex assembly | 6.85E-04 |
| 36 | GO:0010197: polar nucleus fusion | 8.52E-04 |
| 37 | GO:0000460: maturation of 5.8S rRNA | 9.08E-04 |
| 38 | GO:1900864: mitochondrial RNA modification | 9.08E-04 |
| 39 | GO:0031167: rRNA methylation | 1.15E-03 |
| 40 | GO:0000741: karyogamy | 1.41E-03 |
| 41 | GO:0016554: cytidine to uridine editing | 1.41E-03 |
| 42 | GO:0042026: protein refolding | 1.68E-03 |
| 43 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.68E-03 |
| 44 | GO:0006458: 'de novo' protein folding | 1.68E-03 |
| 45 | GO:0009955: adaxial/abaxial pattern specification | 1.68E-03 |
| 46 | GO:0080186: developmental vegetative growth | 1.98E-03 |
| 47 | GO:0000028: ribosomal small subunit assembly | 2.29E-03 |
| 48 | GO:0001510: RNA methylation | 2.61E-03 |
| 49 | GO:0001558: regulation of cell growth | 2.61E-03 |
| 50 | GO:0048507: meristem development | 2.95E-03 |
| 51 | GO:0006189: 'de novo' IMP biosynthetic process | 2.95E-03 |
| 52 | GO:0007338: single fertilization | 2.95E-03 |
| 53 | GO:1900865: chloroplast RNA modification | 3.31E-03 |
| 54 | GO:0030422: production of siRNA involved in RNA interference | 3.68E-03 |
| 55 | GO:0006259: DNA metabolic process | 3.68E-03 |
| 56 | GO:0016569: covalent chromatin modification | 5.61E-03 |
| 57 | GO:0010030: positive regulation of seed germination | 5.71E-03 |
| 58 | GO:0006396: RNA processing | 6.13E-03 |
| 59 | GO:0030150: protein import into mitochondrial matrix | 6.61E-03 |
| 60 | GO:0051302: regulation of cell division | 7.08E-03 |
| 61 | GO:0061077: chaperone-mediated protein folding | 7.56E-03 |
| 62 | GO:0071215: cellular response to abscisic acid stimulus | 8.56E-03 |
| 63 | GO:0008033: tRNA processing | 1.01E-02 |
| 64 | GO:0010501: RNA secondary structure unwinding | 1.01E-02 |
| 65 | GO:0000413: protein peptidyl-prolyl isomerization | 1.01E-02 |
| 66 | GO:0009735: response to cytokinin | 1.06E-02 |
| 67 | GO:0009960: endosperm development | 1.07E-02 |
| 68 | GO:0080156: mitochondrial mRNA modification | 1.24E-02 |
| 69 | GO:0009567: double fertilization forming a zygote and endosperm | 1.42E-02 |
| 70 | GO:0046686: response to cadmium ion | 1.46E-02 |
| 71 | GO:0016049: cell growth | 1.87E-02 |
| 72 | GO:0048527: lateral root development | 2.15E-02 |
| 73 | GO:0000154: rRNA modification | 2.99E-02 |
| 74 | GO:0048367: shoot system development | 3.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 1.26E-27 |
| 4 | GO:0003723: RNA binding | 1.01E-16 |
| 5 | GO:0019843: rRNA binding | 3.59E-10 |
| 6 | GO:0030515: snoRNA binding | 5.88E-07 |
| 7 | GO:0004407: histone deacetylase activity | 1.61E-05 |
| 8 | GO:0003729: mRNA binding | 4.22E-05 |
| 9 | GO:0000166: nucleotide binding | 9.01E-05 |
| 10 | GO:0008026: ATP-dependent helicase activity | 9.10E-05 |
| 11 | GO:1990259: histone-glutamine methyltransferase activity | 1.25E-04 |
| 12 | GO:0042134: rRNA primary transcript binding | 1.25E-04 |
| 13 | GO:0050897: cobalt ion binding | 2.15E-04 |
| 14 | GO:0005078: MAP-kinase scaffold activity | 2.90E-04 |
| 15 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 2.90E-04 |
| 16 | GO:0043021: ribonucleoprotein complex binding | 2.90E-04 |
| 17 | GO:0070181: small ribosomal subunit rRNA binding | 4.78E-04 |
| 18 | GO:0008649: rRNA methyltransferase activity | 4.78E-04 |
| 19 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.78E-04 |
| 20 | GO:0004004: ATP-dependent RNA helicase activity | 1.74E-03 |
| 21 | GO:0008235: metalloexopeptidase activity | 1.98E-03 |
| 22 | GO:0003746: translation elongation factor activity | 2.43E-03 |
| 23 | GO:0003678: DNA helicase activity | 2.95E-03 |
| 24 | GO:0001055: RNA polymerase II activity | 3.31E-03 |
| 25 | GO:0001054: RNA polymerase I activity | 4.06E-03 |
| 26 | GO:0044183: protein binding involved in protein folding | 4.06E-03 |
| 27 | GO:0001056: RNA polymerase III activity | 4.45E-03 |
| 28 | GO:0009982: pseudouridine synthase activity | 4.86E-03 |
| 29 | GO:0000175: 3'-5'-exoribonuclease activity | 4.86E-03 |
| 30 | GO:0051087: chaperone binding | 7.08E-03 |
| 31 | GO:0004527: exonuclease activity | 1.07E-02 |
| 32 | GO:0005507: copper ion binding | 1.87E-02 |
| 33 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.94E-02 |
| 34 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.37E-02 |
| 35 | GO:0003924: GTPase activity | 2.93E-02 |
| 36 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.07E-02 |
| 37 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.40E-02 |
| 38 | GO:0008234: cysteine-type peptidase activity | 3.66E-02 |
| 39 | GO:0051082: unfolded protein binding | 4.37E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 3.53E-33 |
| 4 | GO:0005840: ribosome | 1.16E-17 |
| 5 | GO:0022626: cytosolic ribosome | 1.26E-17 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 3.77E-14 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 4.43E-12 |
| 8 | GO:0032040: small-subunit processome | 4.63E-10 |
| 9 | GO:0005829: cytosol | 5.83E-08 |
| 10 | GO:0015934: large ribosomal subunit | 1.14E-05 |
| 11 | GO:0031428: box C/D snoRNP complex | 3.28E-05 |
| 12 | GO:0030687: preribosome, large subunit precursor | 6.22E-05 |
| 13 | GO:0005834: heterotrimeric G-protein complex | 6.53E-05 |
| 14 | GO:0015030: Cajal body | 1.51E-04 |
| 15 | GO:0070545: PeBoW complex | 2.90E-04 |
| 16 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.99E-04 |
| 17 | GO:0009506: plasmodesma | 5.92E-04 |
| 18 | GO:0031429: box H/ACA snoRNP complex | 6.85E-04 |
| 19 | GO:0000178: exosome (RNase complex) | 1.15E-03 |
| 20 | GO:0005773: vacuole | 1.28E-03 |
| 21 | GO:0005759: mitochondrial matrix | 1.37E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 1.48E-03 |
| 23 | GO:0016363: nuclear matrix | 1.68E-03 |
| 24 | GO:0034399: nuclear periphery | 2.29E-03 |
| 25 | GO:0005736: DNA-directed RNA polymerase I complex | 2.95E-03 |
| 26 | GO:0005666: DNA-directed RNA polymerase III complex | 3.31E-03 |
| 27 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.68E-03 |
| 28 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.06E-03 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.45E-03 |
| 30 | GO:0005739: mitochondrion | 4.47E-03 |
| 31 | GO:0005634: nucleus | 4.71E-03 |
| 32 | GO:0019013: viral nucleocapsid | 4.86E-03 |
| 33 | GO:0005774: vacuolar membrane | 5.08E-03 |
| 34 | GO:0005747: mitochondrial respiratory chain complex I | 5.11E-03 |
| 35 | GO:0000419: DNA-directed RNA polymerase V complex | 6.15E-03 |
| 36 | GO:0005758: mitochondrial intermembrane space | 6.61E-03 |
| 37 | GO:0005618: cell wall | 6.61E-03 |
| 38 | GO:0005654: nucleoplasm | 7.26E-03 |
| 39 | GO:0015935: small ribosomal subunit | 7.56E-03 |
| 40 | GO:0005737: cytoplasm | 8.46E-03 |
| 41 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.07E-03 |
| 42 | GO:0009507: chloroplast | 1.15E-02 |
| 43 | GO:0016592: mediator complex | 1.30E-02 |
| 44 | GO:0005743: mitochondrial inner membrane | 2.73E-02 |
| 45 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.65E-02 |