co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G23890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042908: xenobiotic transport	0.00E+00
2	GO:0018293: protein-FAD linkage	0.00E+00
3	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
4	GO:0032780: negative regulation of ATPase activity	0.00E+00
5	GO:0010202: response to low fluence red light stimulus	0.00E+00
6	GO:0017012: protein-phytochromobilin linkage	0.00E+00
7	GO:0010336: gibberellic acid homeostasis	0.00E+00
8	GO:0046294: formaldehyde catabolic process	0.00E+00
9	GO:0006721: terpenoid metabolic process	0.00E+00
10	GO:0009903: chloroplast avoidance movement	1.25E-06
11	GO:0009649: entrainment of circadian clock	3.11E-05
12	GO:0009902: chloroplast relocation	3.11E-05
13	GO:0009904: chloroplast accumulation movement	5.00E-05
14	GO:0006099: tricarboxylic acid cycle	5.94E-05
15	GO:0046686: response to cadmium ion	8.73E-05
16	GO:0050790: regulation of catalytic activity	1.35E-04
17	GO:0051603: proteolysis involved in cellular protein catabolic process	1.59E-04
18	GO:0006102: isocitrate metabolic process	1.73E-04
19	GO:0005978: glycogen biosynthetic process	1.73E-04
20	GO:0006835: dicarboxylic acid transport	2.06E-04
21	GO:0016487: farnesol metabolic process	2.06E-04
22	GO:0010036: response to boron-containing substance	2.06E-04
23	GO:1902265: abscisic acid homeostasis	2.06E-04
24	GO:0006007: glucose catabolic process	2.06E-04
25	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	2.06E-04
26	GO:0051453: regulation of intracellular pH	3.11E-04
27	GO:0080183: response to photooxidative stress	4.62E-04
28	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.62E-04
29	GO:0043100: pyrimidine nucleobase salvage	4.62E-04
30	GO:0010343: singlet oxygen-mediated programmed cell death	4.62E-04
31	GO:2000030: regulation of response to red or far red light	4.62E-04
32	GO:0019388: galactose catabolic process	4.62E-04
33	GO:0006898: receptor-mediated endocytosis	4.62E-04
34	GO:0010617: circadian regulation of calcium ion oscillation	4.62E-04
35	GO:0019441: tryptophan catabolic process to kynurenine	4.62E-04
36	GO:0097054: L-glutamate biosynthetic process	4.62E-04
37	GO:0031022: nuclear migration along microfilament	7.52E-04
38	GO:0044210: 'de novo' CTP biosynthetic process	7.52E-04
39	GO:1901562: response to paraquat	7.52E-04
40	GO:0071492: cellular response to UV-A	7.52E-04
41	GO:0071836: nectar secretion	7.52E-04
42	GO:0044375: regulation of peroxisome size	7.52E-04
43	GO:0046713: borate transport	1.07E-03
44	GO:0009584: detection of visible light	1.07E-03
45	GO:0006537: glutamate biosynthetic process	1.07E-03
46	GO:0009647: skotomorphogenesis	1.07E-03
47	GO:0009113: purine nucleobase biosynthetic process	1.07E-03
48	GO:0010148: transpiration	1.07E-03
49	GO:0009963: positive regulation of flavonoid biosynthetic process	1.07E-03
50	GO:0015700: arsenite transport	1.07E-03
51	GO:0009590: detection of gravity	1.07E-03
52	GO:0009585: red, far-red light phototransduction	1.19E-03
53	GO:0009687: abscisic acid metabolic process	1.43E-03
54	GO:0070534: protein K63-linked ubiquitination	1.43E-03
55	GO:0019676: ammonia assimilation cycle	1.43E-03
56	GO:0015743: malate transport	1.43E-03
57	GO:0071486: cellular response to high light intensity	1.43E-03
58	GO:0009765: photosynthesis, light harvesting	1.43E-03
59	GO:0071585: detoxification of cadmium ion	1.43E-03
60	GO:0006221: pyrimidine nucleotide biosynthetic process	1.43E-03
61	GO:0071483: cellular response to blue light	1.43E-03
62	GO:0044205: 'de novo' UMP biosynthetic process	1.43E-03
63	GO:0034613: cellular protein localization	1.43E-03
64	GO:0042391: regulation of membrane potential	1.54E-03
65	GO:0006520: cellular amino acid metabolic process	1.66E-03
66	GO:0000304: response to singlet oxygen	1.81E-03
67	GO:0046283: anthocyanin-containing compound metabolic process	1.81E-03
68	GO:0010236: plastoquinone biosynthetic process	1.81E-03
69	GO:0006508: proteolysis	1.90E-03
70	GO:0019252: starch biosynthetic process	1.91E-03
71	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.24E-03
72	GO:0006301: postreplication repair	2.24E-03
73	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.24E-03
74	GO:0006751: glutathione catabolic process	2.24E-03
75	GO:0070814: hydrogen sulfide biosynthetic process	2.24E-03
76	GO:0006796: phosphate-containing compound metabolic process	2.24E-03
77	GO:0009117: nucleotide metabolic process	2.24E-03
78	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.69E-03
79	GO:0010189: vitamin E biosynthetic process	2.69E-03
80	GO:0010029: regulation of seed germination	3.10E-03
81	GO:0010374: stomatal complex development	3.16E-03
82	GO:0010161: red light signaling pathway	3.16E-03
83	GO:0009396: folic acid-containing compound biosynthetic process	3.16E-03
84	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.16E-03
85	GO:0009231: riboflavin biosynthetic process	3.67E-03
86	GO:0016559: peroxisome fission	3.67E-03
87	GO:0030091: protein repair	3.67E-03
88	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.67E-03
89	GO:0015996: chlorophyll catabolic process	4.20E-03
90	GO:0015780: nucleotide-sugar transport	4.75E-03
91	GO:0046685: response to arsenic-containing substance	4.75E-03
92	GO:0009637: response to blue light	4.84E-03
93	GO:0009638: phototropism	5.32E-03
94	GO:0035999: tetrahydrofolate interconversion	5.32E-03
95	GO:0009098: leucine biosynthetic process	5.32E-03
96	GO:0006349: regulation of gene expression by genetic imprinting	5.32E-03
97	GO:0045036: protein targeting to chloroplast	5.93E-03
98	GO:0009641: shade avoidance	5.93E-03
99	GO:0010048: vernalization response	5.93E-03
100	GO:0009970: cellular response to sulfate starvation	5.93E-03
101	GO:0006325: chromatin organization	5.93E-03
102	GO:0000103: sulfate assimilation	5.93E-03
103	GO:0055114: oxidation-reduction process	6.02E-03
104	GO:0009640: photomorphogenesis	6.23E-03
105	GO:0006879: cellular iron ion homeostasis	6.55E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	6.55E-03
107	GO:0048229: gametophyte development	6.55E-03
108	GO:2000028: regulation of photoperiodism, flowering	7.87E-03
109	GO:0050826: response to freezing	7.87E-03
110	GO:0005986: sucrose biosynthetic process	7.87E-03
111	GO:0030048: actin filament-based movement	7.87E-03
112	GO:0006108: malate metabolic process	7.87E-03
113	GO:0006006: glucose metabolic process	7.87E-03
114	GO:0009266: response to temperature stimulus	8.56E-03
115	GO:0007015: actin filament organization	8.56E-03
116	GO:0007031: peroxisome organization	9.27E-03
117	GO:0009409: response to cold	1.07E-02
118	GO:0006487: protein N-linked glycosylation	1.08E-02
119	GO:0051017: actin filament bundle assembly	1.08E-02
120	GO:0008299: isoprenoid biosynthetic process	1.15E-02
121	GO:0019915: lipid storage	1.23E-02
122	GO:0003333: amino acid transmembrane transport	1.23E-02
123	GO:0005975: carbohydrate metabolic process	1.30E-02
124	GO:0016226: iron-sulfur cluster assembly	1.32E-02
125	GO:0006012: galactose metabolic process	1.40E-02
126	GO:0009693: ethylene biosynthetic process	1.40E-02
127	GO:0009058: biosynthetic process	1.59E-02
128	GO:0010118: stomatal movement	1.66E-02
129	GO:0080022: primary root development	1.66E-02
130	GO:0010268: brassinosteroid homeostasis	1.75E-02
131	GO:0009960: endosperm development	1.75E-02
132	GO:0006814: sodium ion transport	1.84E-02
133	GO:0048544: recognition of pollen	1.84E-02
134	GO:0016132: brassinosteroid biosynthetic process	2.03E-02
135	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.03E-02
136	GO:0009630: gravitropism	2.13E-02
137	GO:0019761: glucosinolate biosynthetic process	2.13E-02
138	GO:1901657: glycosyl compound metabolic process	2.23E-02
139	GO:0016125: sterol metabolic process	2.33E-02
140	GO:0006464: cellular protein modification process	2.33E-02
141	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.75E-02
142	GO:0042128: nitrate assimilation	2.86E-02
143	GO:0010411: xyloglucan metabolic process	2.97E-02
144	GO:0048573: photoperiodism, flowering	2.97E-02
145	GO:0035556: intracellular signal transduction	3.08E-02
146	GO:0018298: protein-chromophore linkage	3.19E-02
147	GO:0010218: response to far red light	3.42E-02
148	GO:0006970: response to osmotic stress	3.46E-02
149	GO:0010043: response to zinc ion	3.54E-02
150	GO:0007568: aging	3.54E-02
151	GO:0010119: regulation of stomatal movement	3.54E-02
152	GO:0009867: jasmonic acid mediated signaling pathway	3.78E-02
153	GO:0006468: protein phosphorylation	3.84E-02
154	GO:0080167: response to karrikin	3.98E-02
155	GO:0015979: photosynthesis	4.54E-02
156	GO:0008643: carbohydrate transport	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
2	GO:0042030: ATPase inhibitor activity	0.00E+00
3	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
4	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
5	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
6	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
7	GO:0015930: glutamate synthase activity	0.00E+00
8	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
9	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
10	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
11	GO:0031517: red light photoreceptor activity	0.00E+00
12	GO:0004151: dihydroorotase activity	0.00E+00
13	GO:0017153: sodium:dicarboxylate symporter activity	0.00E+00
14	GO:0047886: farnesol dehydrogenase activity	0.00E+00
15	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.01E-06
16	GO:0004557: alpha-galactosidase activity	7.40E-06
17	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.69E-05
18	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	7.36E-05
19	GO:0005261: cation channel activity	1.02E-04
20	GO:0004328: formamidase activity	2.06E-04
21	GO:0031516: far-red light photoreceptor activity	2.06E-04
22	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	2.06E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.06E-04
24	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.06E-04
25	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.06E-04
26	GO:0046480: galactolipid galactosyltransferase activity	2.06E-04
27	GO:0080079: cellobiose glucosidase activity	2.06E-04
28	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.06E-04
29	GO:0008802: betaine-aldehyde dehydrogenase activity	2.06E-04
30	GO:1990841: promoter-specific chromatin binding	2.06E-04
31	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.06E-04
32	GO:0080139: borate efflux transmembrane transporter activity	2.06E-04
33	GO:0016783: sulfurtransferase activity	2.06E-04
34	GO:0071992: phytochelatin transmembrane transporter activity	2.06E-04
35	GO:0016041: glutamate synthase (ferredoxin) activity	2.06E-04
36	GO:0016868: intramolecular transferase activity, phosphotransferases	4.62E-04
37	GO:0009883: red or far-red light photoreceptor activity	4.62E-04
38	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.62E-04
39	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.62E-04
40	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	4.62E-04
41	GO:0050347: trans-octaprenyltranstransferase activity	4.62E-04
42	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.62E-04
43	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.62E-04
44	GO:0004046: aminoacylase activity	4.62E-04
45	GO:0004061: arylformamidase activity	4.62E-04
46	GO:0004614: phosphoglucomutase activity	4.62E-04
47	GO:0004329: formate-tetrahydrofolate ligase activity	4.62E-04
48	GO:0030552: cAMP binding	6.92E-04
49	GO:0030553: cGMP binding	6.92E-04
50	GO:0052692: raffinose alpha-galactosidase activity	7.52E-04
51	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.52E-04
52	GO:0046524: sucrose-phosphate synthase activity	7.52E-04
53	GO:0003861: 3-isopropylmalate dehydratase activity	7.52E-04
54	GO:0003935: GTP cyclohydrolase II activity	7.52E-04
55	GO:0008020: G-protein coupled photoreceptor activity	7.52E-04
56	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.52E-04
57	GO:0004185: serine-type carboxypeptidase activity	8.26E-04
58	GO:0042802: identical protein binding	9.25E-04
59	GO:0005216: ion channel activity	9.35E-04
60	GO:0035529: NADH pyrophosphatase activity	1.07E-03
61	GO:0004792: thiosulfate sulfurtransferase activity	1.07E-03
62	GO:0003883: CTP synthase activity	1.07E-03
63	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.07E-03
64	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.07E-03
65	GO:0046715: borate transmembrane transporter activity	1.07E-03
66	GO:0000287: magnesium ion binding	1.21E-03
67	GO:0008234: cysteine-type peptidase activity	1.35E-03
68	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.43E-03
69	GO:0004301: epoxide hydrolase activity	1.43E-03
70	GO:0005249: voltage-gated potassium channel activity	1.54E-03
71	GO:0030551: cyclic nucleotide binding	1.54E-03
72	GO:0015301: anion:anion antiporter activity	1.81E-03
73	GO:0005452: inorganic anion exchanger activity	1.81E-03
74	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.81E-03
75	GO:0051538: 3 iron, 4 sulfur cluster binding	1.81E-03
76	GO:0004197: cysteine-type endopeptidase activity	2.18E-03
77	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.24E-03
78	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.24E-03
79	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.24E-03
80	GO:0016157: sucrose synthase activity	2.69E-03
81	GO:0030060: L-malate dehydrogenase activity	2.69E-03
82	GO:0016491: oxidoreductase activity	3.04E-03
83	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.16E-03
84	GO:0004427: inorganic diphosphatase activity	3.16E-03
85	GO:0015140: malate transmembrane transporter activity	3.16E-03
86	GO:0008236: serine-type peptidase activity	3.63E-03
87	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.67E-03
88	GO:0004034: aldose 1-epimerase activity	3.67E-03
89	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.75E-03
90	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.32E-03
91	GO:0015174: basic amino acid transmembrane transporter activity	5.32E-03
92	GO:0004673: protein histidine kinase activity	5.93E-03
93	GO:0008559: xenobiotic-transporting ATPase activity	6.55E-03
94	GO:0008378: galactosyltransferase activity	7.20E-03
95	GO:0051287: NAD binding	7.55E-03
96	GO:0000155: phosphorelay sensor kinase activity	7.87E-03
97	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.87E-03
98	GO:0016787: hydrolase activity	7.90E-03
99	GO:0008324: cation transmembrane transporter activity	1.15E-02
100	GO:0004672: protein kinase activity	1.23E-02
101	GO:0004176: ATP-dependent peptidase activity	1.23E-02
102	GO:0003727: single-stranded RNA binding	1.48E-02
103	GO:0018024: histone-lysine N-methyltransferase activity	1.57E-02
104	GO:0030170: pyridoxal phosphate binding	1.67E-02
105	GO:0016853: isomerase activity	1.84E-02
106	GO:0050662: coenzyme binding	1.84E-02
107	GO:0048038: quinone binding	2.03E-02
108	GO:0008483: transaminase activity	2.43E-02
109	GO:0008237: metallopeptidase activity	2.43E-02
110	GO:0016413: O-acetyltransferase activity	2.54E-02
111	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.64E-02
112	GO:0016168: chlorophyll binding	2.75E-02
113	GO:0004806: triglyceride lipase activity	2.97E-02
114	GO:0030247: polysaccharide binding	2.97E-02
115	GO:0016788: hydrolase activity, acting on ester bonds	3.28E-02
116	GO:0004222: metalloendopeptidase activity	3.42E-02
117	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.42E-02
118	GO:0030145: manganese ion binding	3.54E-02
119	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-02
120	GO:0008422: beta-glucosidase activity	4.02E-02
121	GO:0051539: 4 iron, 4 sulfur cluster binding	4.15E-02
122	GO:0052689: carboxylic ester hydrolase activity	4.39E-02
123	GO:0005524: ATP binding	4.44E-02
124	GO:0005516: calmodulin binding	4.76E-02
125	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-02
126	GO:0004871: signal transducer activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0005773: vacuole	4.88E-06
3	GO:0009507: chloroplast	9.58E-06
4	GO:0005764: lysosome	2.86E-05
5	GO:0043674: columella	2.06E-04
6	GO:0000152: nuclear ubiquitin ligase complex	2.06E-04
7	GO:0016604: nuclear body	3.11E-04
8	GO:0016328: lateral plasma membrane	7.52E-04
9	GO:0031519: PcG protein complex	7.52E-04
10	GO:0005829: cytosol	9.26E-04
11	GO:0031372: UBC13-MMS2 complex	1.43E-03
12	GO:0009526: plastid envelope	1.43E-03
13	GO:0031463: Cul3-RING ubiquitin ligase complex	2.24E-03
14	GO:0005774: vacuolar membrane	2.52E-03
15	GO:0005623: cell	2.56E-03
16	GO:0010319: stromule	2.62E-03
17	GO:0009536: plastid	2.64E-03
18	GO:0048046: apoplast	2.84E-03
19	GO:0031359: integral component of chloroplast outer membrane	3.16E-03
20	GO:0009501: amyloplast	3.67E-03
21	GO:0031982: vesicle	3.67E-03
22	GO:0005779: integral component of peroxisomal membrane	4.20E-03
23	GO:0005677: chromatin silencing complex	4.20E-03
24	GO:0005615: extracellular space	4.29E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.75E-03
26	GO:0005884: actin filament	6.55E-03
27	GO:0031969: chloroplast membrane	8.52E-03
28	GO:0005777: peroxisome	9.17E-03
29	GO:0009570: chloroplast stroma	1.13E-02
30	GO:0042651: thylakoid membrane	1.15E-02
31	GO:0005759: mitochondrial matrix	1.89E-02
32	GO:0009523: photosystem II	1.94E-02
33	GO:0005887: integral component of plasma membrane	2.06E-02
34	GO:0005778: peroxisomal membrane	2.43E-02
35	GO:0005783: endoplasmic reticulum	3.13E-02
36	GO:0009707: chloroplast outer membrane	3.19E-02
37	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.53E-02
38	GO:0000325: plant-type vacuole	3.54E-02