Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071000: response to magnetism0.00E+00
2GO:0042817: pyridoxal metabolic process0.00E+00
3GO:1904281: positive regulation of transcription from RNA polymerase V promoter0.00E+00
4GO:1990280: RNA localization to chromatin0.00E+00
5GO:0015813: L-glutamate transport0.00E+00
6GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
7GO:0009583: detection of light stimulus0.00E+00
8GO:0015995: chlorophyll biosynthetic process1.12E-05
9GO:0044030: regulation of DNA methylation1.40E-05
10GO:0072387: flavin adenine dinucleotide metabolic process3.50E-05
11GO:1902466: positive regulation of histone H3-K27 trimethylation3.50E-05
12GO:0048438: floral whorl development3.50E-05
13GO:1903705: positive regulation of production of siRNA involved in RNA interference3.50E-05
14GO:0080005: photosystem stoichiometry adjustment8.78E-05
15GO:0010617: circadian regulation of calcium ion oscillation8.78E-05
16GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.78E-05
17GO:0099402: plant organ development8.78E-05
18GO:0010343: singlet oxygen-mediated programmed cell death8.78E-05
19GO:0006739: NADP metabolic process8.78E-05
20GO:1901529: positive regulation of anion channel activity8.78E-05
21GO:1902448: positive regulation of shade avoidance1.52E-04
22GO:1901672: positive regulation of systemic acquired resistance1.52E-04
23GO:0033014: tetrapyrrole biosynthetic process2.25E-04
24GO:0008615: pyridoxine biosynthetic process2.25E-04
25GO:1901332: negative regulation of lateral root development2.25E-04
26GO:0015729: oxaloacetate transport2.25E-04
27GO:0046653: tetrahydrofolate metabolic process2.25E-04
28GO:0006734: NADH metabolic process3.05E-04
29GO:1902347: response to strigolactone3.05E-04
30GO:0006346: methylation-dependent chromatin silencing3.05E-04
31GO:0019676: ammonia assimilation cycle3.05E-04
32GO:0015743: malate transport3.05E-04
33GO:0031935: regulation of chromatin silencing3.05E-04
34GO:0009658: chloroplast organization3.23E-04
35GO:0010117: photoprotection3.89E-04
36GO:0046283: anthocyanin-containing compound metabolic process3.89E-04
37GO:0045038: protein import into chloroplast thylakoid membrane3.89E-04
38GO:0016123: xanthophyll biosynthetic process3.89E-04
39GO:0071423: malate transmembrane transport3.89E-04
40GO:0016120: carotene biosynthetic process3.89E-04
41GO:0009910: negative regulation of flower development4.43E-04
42GO:0060918: auxin transport4.78E-04
43GO:1901371: regulation of leaf morphogenesis4.78E-04
44GO:0010076: maintenance of floral meristem identity5.70E-04
45GO:0010019: chloroplast-nucleus signaling pathway5.70E-04
46GO:0010310: regulation of hydrogen peroxide metabolic process5.70E-04
47GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.70E-04
48GO:0051510: regulation of unidimensional cell growth6.66E-04
49GO:0006401: RNA catabolic process6.66E-04
50GO:1900056: negative regulation of leaf senescence6.66E-04
51GO:0080111: DNA demethylation6.66E-04
52GO:0009396: folic acid-containing compound biosynthetic process6.66E-04
53GO:0009644: response to high light intensity6.67E-04
54GO:0006402: mRNA catabolic process7.68E-04
55GO:0006364: rRNA processing8.23E-04
56GO:0032544: plastid translation8.71E-04
57GO:1900426: positive regulation of defense response to bacterium1.09E-03
58GO:0009638: phototropism1.09E-03
59GO:0035999: tetrahydrofolate interconversion1.09E-03
60GO:0010380: regulation of chlorophyll biosynthetic process1.09E-03
61GO:0031425: chloroplast RNA processing1.09E-03
62GO:0006782: protoporphyrinogen IX biosynthetic process1.20E-03
63GO:0043085: positive regulation of catalytic activity1.32E-03
64GO:0010582: floral meristem determinacy1.44E-03
65GO:0010075: regulation of meristem growth1.57E-03
66GO:0009767: photosynthetic electron transport chain1.57E-03
67GO:0009785: blue light signaling pathway1.57E-03
68GO:0009266: response to temperature stimulus1.70E-03
69GO:0019253: reductive pentose-phosphate cycle1.70E-03
70GO:0080188: RNA-directed DNA methylation1.84E-03
71GO:0009451: RNA modification1.99E-03
72GO:2000377: regulation of reactive oxygen species metabolic process2.12E-03
73GO:0006730: one-carbon metabolic process2.56E-03
74GO:0008033: tRNA processing3.20E-03
75GO:0010118: stomatal movement3.20E-03
76GO:0006814: sodium ion transport3.53E-03
77GO:0042752: regulation of circadian rhythm3.53E-03
78GO:0009646: response to absence of light3.53E-03
79GO:0046777: protein autophosphorylation3.95E-03
80GO:0016126: sterol biosynthetic process4.99E-03
81GO:0006397: mRNA processing5.67E-03
82GO:0018298: protein-chromophore linkage5.99E-03
83GO:0010218: response to far red light6.40E-03
84GO:0009637: response to blue light7.05E-03
85GO:0009853: photorespiration7.05E-03
86GO:0010114: response to red light8.41E-03
87GO:0009640: photomorphogenesis8.41E-03
88GO:0006260: DNA replication9.61E-03
89GO:0000165: MAPK cascade9.61E-03
90GO:0006096: glycolytic process1.17E-02
91GO:0055114: oxidation-reduction process1.23E-02
92GO:0009624: response to nematode1.33E-02
93GO:0016036: cellular response to phosphate starvation1.86E-02
94GO:0007623: circadian rhythm1.96E-02
95GO:0010468: regulation of gene expression2.22E-02
96GO:0045944: positive regulation of transcription from RNA polymerase II promoter2.53E-02
97GO:0006810: transport2.88E-02
98GO:0045892: negative regulation of transcription, DNA-templated3.58E-02
99GO:0009793: embryo development ending in seed dormancy4.52E-02
RankGO TermAdjusted P value
1GO:0052857: NADPHX epimerase activity3.50E-05
2GO:0004654: polyribonucleotide nucleotidyltransferase activity3.50E-05
3GO:0046906: tetrapyrrole binding3.50E-05
4GO:0004733: pyridoxamine-phosphate oxidase activity3.50E-05
5GO:0052856: NADHX epimerase activity3.50E-05
6GO:0000175: 3'-5'-exoribonuclease activity4.39E-05
7GO:0004618: phosphoglycerate kinase activity8.78E-05
8GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity8.78E-05
9GO:0004477: methenyltetrahydrofolate cyclohydrolase activity8.78E-05
10GO:0004109: coproporphyrinogen oxidase activity8.78E-05
11GO:0015367: oxoglutarate:malate antiporter activity8.78E-05
12GO:0000900: translation repressor activity, nucleic acid binding1.52E-04
13GO:0004180: carboxypeptidase activity1.52E-04
14GO:0004848: ureidoglycolate hydrolase activity1.52E-04
15GO:0015131: oxaloacetate transmembrane transporter activity2.25E-04
16GO:0009882: blue light photoreceptor activity2.25E-04
17GO:0000254: C-4 methylsterol oxidase activity2.25E-04
18GO:0005313: L-glutamate transmembrane transporter activity3.05E-04
19GO:0019899: enzyme binding6.66E-04
20GO:0015140: malate transmembrane transporter activity6.66E-04
21GO:0071949: FAD binding9.78E-04
22GO:0031072: heat shock protein binding1.57E-03
23GO:0003887: DNA-directed DNA polymerase activity1.97E-03
24GO:0004176: ATP-dependent peptidase activity2.41E-03
25GO:0008408: 3'-5' exonuclease activity2.41E-03
26GO:0042802: identical protein binding2.46E-03
27GO:0003727: single-stranded RNA binding2.87E-03
28GO:0008080: N-acetyltransferase activity3.36E-03
29GO:0010181: FMN binding3.53E-03
30GO:0048038: quinone binding3.88E-03
31GO:0008483: transaminase activity4.60E-03
32GO:0008237: metallopeptidase activity4.60E-03
33GO:0016491: oxidoreductase activity4.84E-03
34GO:0008236: serine-type peptidase activity5.78E-03
35GO:0004519: endonuclease activity5.91E-03
36GO:0004222: metalloendopeptidase activity6.40E-03
37GO:0004712: protein serine/threonine/tyrosine kinase activity7.49E-03
38GO:0051539: 4 iron, 4 sulfur cluster binding7.72E-03
39GO:0000166: nucleotide binding9.64E-03
40GO:0051082: unfolded protein binding1.33E-02
41GO:0016746: transferase activity, transferring acyl groups1.36E-02
42GO:0019843: rRNA binding1.56E-02
43GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.71E-02
44GO:0003676: nucleic acid binding2.05E-02
45GO:0003824: catalytic activity2.15E-02
46GO:0003729: mRNA binding2.92E-02
47GO:0042803: protein homodimerization activity3.66E-02
48GO:0003924: GTPase activity4.11E-02
49GO:0003723: RNA binding4.54E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.04E-11
2GO:0009706: chloroplast inner membrane8.15E-05
3GO:0080085: signal recognition particle, chloroplast targeting8.78E-05
4GO:0009570: chloroplast stroma1.21E-04
5GO:0016605: PML body1.52E-04
6GO:0000123: histone acetyltransferase complex6.66E-04
7GO:0009536: plastid7.83E-04
8GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.71E-04
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.78E-04
10GO:0016604: nuclear body1.09E-03
11GO:0009941: chloroplast envelope1.37E-03
12GO:0009535: chloroplast thylakoid membrane9.49E-03
13GO:0031966: mitochondrial membrane9.86E-03
14GO:0009534: chloroplast thylakoid1.17E-02
15GO:0005654: nucleoplasm1.53E-02
16GO:0005623: cell1.59E-02
17GO:0005622: intracellular1.72E-02
18GO:0031969: chloroplast membrane3.11E-02
19GO:0043231: intracellular membrane-bounded organelle4.41E-02
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Gene type



Gene DE type