GO Enrichment Analysis of Co-expressed Genes with
AT5G22840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0005997: xylulose metabolic process | 0.00E+00 |
| 3 | GO:0019685: photosynthesis, dark reaction | 0.00E+00 |
| 4 | GO:0015813: L-glutamate transport | 0.00E+00 |
| 5 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 6 | GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine | 0.00E+00 |
| 7 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 8 | GO:0080005: photosystem stoichiometry adjustment | 5.13E-07 |
| 9 | GO:0006013: mannose metabolic process | 1.95E-06 |
| 10 | GO:2001141: regulation of RNA biosynthetic process | 4.63E-06 |
| 11 | GO:0016120: carotene biosynthetic process | 1.46E-05 |
| 12 | GO:0010190: cytochrome b6f complex assembly | 2.21E-05 |
| 13 | GO:0071482: cellular response to light stimulus | 7.06E-05 |
| 14 | GO:0042371: vitamin K biosynthetic process | 9.88E-05 |
| 15 | GO:0071461: cellular response to redox state | 9.88E-05 |
| 16 | GO:0010362: negative regulation of anion channel activity by blue light | 9.88E-05 |
| 17 | GO:0071266: 'de novo' L-methionine biosynthetic process | 9.88E-05 |
| 18 | GO:0019346: transsulfuration | 9.88E-05 |
| 19 | GO:0019343: cysteine biosynthetic process via cystathionine | 9.88E-05 |
| 20 | GO:0006352: DNA-templated transcription, initiation | 1.48E-04 |
| 21 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.32E-04 |
| 22 | GO:0016122: xanthophyll metabolic process | 2.32E-04 |
| 23 | GO:0010343: singlet oxygen-mediated programmed cell death | 2.32E-04 |
| 24 | GO:0048255: mRNA stabilization | 2.32E-04 |
| 25 | GO:0009658: chloroplast organization | 2.56E-04 |
| 26 | GO:0009150: purine ribonucleotide metabolic process | 3.86E-04 |
| 27 | GO:0006696: ergosterol biosynthetic process | 3.86E-04 |
| 28 | GO:0071836: nectar secretion | 3.86E-04 |
| 29 | GO:0044210: 'de novo' CTP biosynthetic process | 3.86E-04 |
| 30 | GO:0016117: carotenoid biosynthetic process | 5.38E-04 |
| 31 | GO:0010371: regulation of gibberellin biosynthetic process | 5.54E-04 |
| 32 | GO:0015729: oxaloacetate transport | 5.54E-04 |
| 33 | GO:0046653: tetrahydrofolate metabolic process | 5.54E-04 |
| 34 | GO:0033014: tetrapyrrole biosynthetic process | 5.54E-04 |
| 35 | GO:0009902: chloroplast relocation | 7.37E-04 |
| 36 | GO:0034613: cellular protein localization | 7.37E-04 |
| 37 | GO:0019676: ammonia assimilation cycle | 7.37E-04 |
| 38 | GO:0015743: malate transport | 7.37E-04 |
| 39 | GO:0009765: photosynthesis, light harvesting | 7.37E-04 |
| 40 | GO:0006552: leucine catabolic process | 7.37E-04 |
| 41 | GO:0016123: xanthophyll biosynthetic process | 9.32E-04 |
| 42 | GO:0071423: malate transmembrane transport | 9.32E-04 |
| 43 | GO:0000304: response to singlet oxygen | 9.32E-04 |
| 44 | GO:0010117: photoprotection | 9.32E-04 |
| 45 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.14E-03 |
| 46 | GO:0010019: chloroplast-nucleus signaling pathway | 1.36E-03 |
| 47 | GO:0006400: tRNA modification | 1.59E-03 |
| 48 | GO:0015693: magnesium ion transport | 1.59E-03 |
| 49 | GO:1900056: negative regulation of leaf senescence | 1.59E-03 |
| 50 | GO:0009396: folic acid-containing compound biosynthetic process | 1.59E-03 |
| 51 | GO:0007568: aging | 1.61E-03 |
| 52 | GO:0009704: de-etiolation | 1.84E-03 |
| 53 | GO:0050821: protein stabilization | 1.84E-03 |
| 54 | GO:0006102: isocitrate metabolic process | 1.84E-03 |
| 55 | GO:0048564: photosystem I assembly | 1.84E-03 |
| 56 | GO:0044030: regulation of DNA methylation | 2.10E-03 |
| 57 | GO:0006783: heme biosynthetic process | 2.37E-03 |
| 58 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 2.37E-03 |
| 59 | GO:0009638: phototropism | 2.65E-03 |
| 60 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.65E-03 |
| 61 | GO:0035999: tetrahydrofolate interconversion | 2.65E-03 |
| 62 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.65E-03 |
| 63 | GO:0009688: abscisic acid biosynthetic process | 2.95E-03 |
| 64 | GO:0045036: protein targeting to chloroplast | 2.95E-03 |
| 65 | GO:0008285: negative regulation of cell proliferation | 3.25E-03 |
| 66 | GO:0043085: positive regulation of catalytic activity | 3.25E-03 |
| 67 | GO:0006790: sulfur compound metabolic process | 3.57E-03 |
| 68 | GO:0009767: photosynthetic electron transport chain | 3.89E-03 |
| 69 | GO:0005986: sucrose biosynthetic process | 3.89E-03 |
| 70 | GO:0010207: photosystem II assembly | 4.22E-03 |
| 71 | GO:0090351: seedling development | 4.57E-03 |
| 72 | GO:0010073: meristem maintenance | 5.65E-03 |
| 73 | GO:0007017: microtubule-based process | 5.65E-03 |
| 74 | GO:0006730: one-carbon metabolic process | 6.42E-03 |
| 75 | GO:0016226: iron-sulfur cluster assembly | 6.42E-03 |
| 76 | GO:0010227: floral organ abscission | 6.82E-03 |
| 77 | GO:0009451: RNA modification | 7.60E-03 |
| 78 | GO:0010228: vegetative to reproductive phase transition of meristem | 7.77E-03 |
| 79 | GO:0010118: stomatal movement | 8.07E-03 |
| 80 | GO:0006662: glycerol ether metabolic process | 8.50E-03 |
| 81 | GO:0006814: sodium ion transport | 8.94E-03 |
| 82 | GO:0009791: post-embryonic development | 9.39E-03 |
| 83 | GO:0010027: thylakoid membrane organization | 1.28E-02 |
| 84 | GO:0009816: defense response to bacterium, incompatible interaction | 1.33E-02 |
| 85 | GO:0006950: response to stress | 1.43E-02 |
| 86 | GO:0015995: chlorophyll biosynthetic process | 1.43E-02 |
| 87 | GO:0046777: protein autophosphorylation | 1.53E-02 |
| 88 | GO:0018298: protein-chromophore linkage | 1.54E-02 |
| 89 | GO:0000160: phosphorelay signal transduction system | 1.60E-02 |
| 90 | GO:0006811: ion transport | 1.65E-02 |
| 91 | GO:0010043: response to zinc ion | 1.71E-02 |
| 92 | GO:0009910: negative regulation of flower development | 1.71E-02 |
| 93 | GO:0009637: response to blue light | 1.82E-02 |
| 94 | GO:0009853: photorespiration | 1.82E-02 |
| 95 | GO:0006099: tricarboxylic acid cycle | 1.88E-02 |
| 96 | GO:0034599: cellular response to oxidative stress | 1.88E-02 |
| 97 | GO:0009640: photomorphogenesis | 2.18E-02 |
| 98 | GO:0006508: proteolysis | 2.46E-02 |
| 99 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.77E-02 |
| 100 | GO:0006417: regulation of translation | 2.90E-02 |
| 101 | GO:0055114: oxidation-reduction process | 3.40E-02 |
| 102 | GO:0009624: response to nematode | 3.47E-02 |
| 103 | GO:0009058: biosynthetic process | 4.22E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 2 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0001053: plastid sigma factor activity | 8.78E-06 |
| 6 | GO:0016987: sigma factor activity | 8.78E-06 |
| 7 | GO:0004559: alpha-mannosidase activity | 3.14E-05 |
| 8 | GO:0030941: chloroplast targeting sequence binding | 9.88E-05 |
| 9 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 9.88E-05 |
| 10 | GO:0004485: methylcrotonoyl-CoA carboxylase activity | 9.88E-05 |
| 11 | GO:0004123: cystathionine gamma-lyase activity | 9.88E-05 |
| 12 | GO:0046906: tetrapyrrole binding | 9.88E-05 |
| 13 | GO:0004325: ferrochelatase activity | 9.88E-05 |
| 14 | GO:0004121: cystathionine beta-lyase activity | 9.88E-05 |
| 15 | GO:0051996: squalene synthase activity | 9.88E-05 |
| 16 | GO:0004856: xylulokinase activity | 9.88E-05 |
| 17 | GO:0016783: sulfurtransferase activity | 9.88E-05 |
| 18 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.32E-04 |
| 19 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 2.32E-04 |
| 20 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 2.32E-04 |
| 21 | GO:0004046: aminoacylase activity | 2.32E-04 |
| 22 | GO:0015367: oxoglutarate:malate antiporter activity | 2.32E-04 |
| 23 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 2.32E-04 |
| 24 | GO:0004176: ATP-dependent peptidase activity | 3.84E-04 |
| 25 | GO:0004180: carboxypeptidase activity | 3.86E-04 |
| 26 | GO:0046524: sucrose-phosphate synthase activity | 3.86E-04 |
| 27 | GO:0003913: DNA photolyase activity | 3.86E-04 |
| 28 | GO:0032947: protein complex scaffold | 3.86E-04 |
| 29 | GO:0003962: cystathionine gamma-synthase activity | 3.86E-04 |
| 30 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 3.86E-04 |
| 31 | GO:0004075: biotin carboxylase activity | 3.86E-04 |
| 32 | GO:0009882: blue light photoreceptor activity | 5.54E-04 |
| 33 | GO:0047627: adenylylsulfatase activity | 5.54E-04 |
| 34 | GO:0015131: oxaloacetate transmembrane transporter activity | 5.54E-04 |
| 35 | GO:0004792: thiosulfate sulfurtransferase activity | 5.54E-04 |
| 36 | GO:0003883: CTP synthase activity | 5.54E-04 |
| 37 | GO:0008080: N-acetyltransferase activity | 6.24E-04 |
| 38 | GO:0051861: glycolipid binding | 7.37E-04 |
| 39 | GO:0005313: L-glutamate transmembrane transporter activity | 7.37E-04 |
| 40 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 9.32E-04 |
| 41 | GO:0008237: metallopeptidase activity | 9.73E-04 |
| 42 | GO:0000293: ferric-chelate reductase activity | 1.14E-03 |
| 43 | GO:0016157: sucrose synthase activity | 1.36E-03 |
| 44 | GO:0004222: metalloendopeptidase activity | 1.54E-03 |
| 45 | GO:0015140: malate transmembrane transporter activity | 1.59E-03 |
| 46 | GO:0019899: enzyme binding | 1.59E-03 |
| 47 | GO:0071949: FAD binding | 2.37E-03 |
| 48 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.04E-03 |
| 49 | GO:0015095: magnesium ion transmembrane transporter activity | 3.89E-03 |
| 50 | GO:0031072: heat shock protein binding | 3.89E-03 |
| 51 | GO:0000155: phosphorelay sensor kinase activity | 3.89E-03 |
| 52 | GO:0051536: iron-sulfur cluster binding | 5.28E-03 |
| 53 | GO:0016491: oxidoreductase activity | 6.91E-03 |
| 54 | GO:0047134: protein-disulfide reductase activity | 7.64E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 8.94E-03 |
| 56 | GO:0010181: FMN binding | 8.94E-03 |
| 57 | GO:0048038: quinone binding | 9.85E-03 |
| 58 | GO:0004518: nuclease activity | 1.03E-02 |
| 59 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.08E-02 |
| 60 | GO:0008236: serine-type peptidase activity | 1.49E-02 |
| 61 | GO:0050897: cobalt ion binding | 1.71E-02 |
| 62 | GO:0004185: serine-type carboxypeptidase activity | 2.18E-02 |
| 63 | GO:0004519: endonuclease activity | 2.30E-02 |
| 64 | GO:0005198: structural molecule activity | 2.37E-02 |
| 65 | GO:0051287: NAD binding | 2.50E-02 |
| 66 | GO:0016757: transferase activity, transferring glycosyl groups | 2.86E-02 |
| 67 | GO:0003777: microtubule motor activity | 2.90E-02 |
| 68 | GO:0016887: ATPase activity | 3.27E-02 |
| 69 | GO:0022857: transmembrane transporter activity | 3.32E-02 |
| 70 | GO:0051082: unfolded protein binding | 3.47E-02 |
| 71 | GO:0015035: protein disulfide oxidoreductase activity | 3.54E-02 |
| 72 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.15E-02 |
| 73 | GO:0030170: pyridoxal phosphate binding | 4.38E-02 |
| 74 | GO:0016787: hydrolase activity | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.99E-18 |
| 2 | GO:0031969: chloroplast membrane | 5.48E-12 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 7.58E-06 |
| 4 | GO:0009536: plastid | 5.79E-05 |
| 5 | GO:0030286: dynein complex | 7.37E-04 |
| 6 | GO:0009517: PSII associated light-harvesting complex II | 7.37E-04 |
| 7 | GO:0055035: plastid thylakoid membrane | 9.32E-04 |
| 8 | GO:0009941: chloroplast envelope | 1.45E-03 |
| 9 | GO:0031359: integral component of chloroplast outer membrane | 1.59E-03 |
| 10 | GO:0009534: chloroplast thylakoid | 2.08E-03 |
| 11 | GO:0005875: microtubule associated complex | 4.92E-03 |
| 12 | GO:0042651: thylakoid membrane | 5.65E-03 |
| 13 | GO:0005777: peroxisome | 9.37E-03 |
| 14 | GO:0009707: chloroplast outer membrane | 1.54E-02 |
| 15 | GO:0031977: thylakoid lumen | 2.06E-02 |
| 16 | GO:0031966: mitochondrial membrane | 2.57E-02 |
| 17 | GO:0009706: chloroplast inner membrane | 3.47E-02 |
| 18 | GO:0010287: plastoglobule | 3.92E-02 |
| 19 | GO:0005759: mitochondrial matrix | 4.78E-02 |