GO Enrichment Analysis of Co-expressed Genes with
AT5G22650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 6 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 7 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 8 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 9 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 10 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 11 | GO:0006412: translation | 2.83E-52 |
| 12 | GO:0006364: rRNA processing | 5.69E-16 |
| 13 | GO:0042254: ribosome biogenesis | 1.04E-14 |
| 14 | GO:0006626: protein targeting to mitochondrion | 4.91E-08 |
| 15 | GO:0009735: response to cytokinin | 3.39E-06 |
| 16 | GO:0048569: post-embryonic animal organ development | 6.16E-06 |
| 17 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.16E-06 |
| 18 | GO:0007005: mitochondrion organization | 1.44E-05 |
| 19 | GO:0045039: protein import into mitochondrial inner membrane | 2.16E-05 |
| 20 | GO:0006413: translational initiation | 6.53E-05 |
| 21 | GO:0042274: ribosomal small subunit biogenesis | 8.40E-05 |
| 22 | GO:0042273: ribosomal large subunit biogenesis | 8.40E-05 |
| 23 | GO:0046686: response to cadmium ion | 9.57E-05 |
| 24 | GO:0031167: rRNA methylation | 1.31E-04 |
| 25 | GO:0009553: embryo sac development | 1.59E-04 |
| 26 | GO:0000027: ribosomal large subunit assembly | 1.71E-04 |
| 27 | GO:0000470: maturation of LSU-rRNA | 1.88E-04 |
| 28 | GO:0006458: 'de novo' protein folding | 2.54E-04 |
| 29 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 3.70E-04 |
| 30 | GO:0031120: snRNA pseudouridine synthesis | 3.70E-04 |
| 31 | GO:0000469: cleavage involved in rRNA processing | 3.70E-04 |
| 32 | GO:0031118: rRNA pseudouridine synthesis | 3.70E-04 |
| 33 | GO:0035266: meristem growth | 3.70E-04 |
| 34 | GO:0030490: maturation of SSU-rRNA | 3.70E-04 |
| 35 | GO:0006434: seryl-tRNA aminoacylation | 3.70E-04 |
| 36 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.70E-04 |
| 37 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.70E-04 |
| 38 | GO:0019877: diaminopimelate biosynthetic process | 3.70E-04 |
| 39 | GO:0043985: histone H4-R3 methylation | 3.70E-04 |
| 40 | GO:0006169: adenosine salvage | 3.70E-04 |
| 41 | GO:0006407: rRNA export from nucleus | 3.70E-04 |
| 42 | GO:0008033: tRNA processing | 4.00E-04 |
| 43 | GO:0000028: ribosomal small subunit assembly | 4.14E-04 |
| 44 | GO:0006414: translational elongation | 4.91E-04 |
| 45 | GO:0001510: RNA methylation | 5.06E-04 |
| 46 | GO:0006189: 'de novo' IMP biosynthetic process | 6.07E-04 |
| 47 | GO:0045859: regulation of protein kinase activity | 8.05E-04 |
| 48 | GO:0045905: positive regulation of translational termination | 8.05E-04 |
| 49 | GO:0080009: mRNA methylation | 8.05E-04 |
| 50 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 8.05E-04 |
| 51 | GO:0045901: positive regulation of translational elongation | 8.05E-04 |
| 52 | GO:0045041: protein import into mitochondrial intermembrane space | 8.05E-04 |
| 53 | GO:0034470: ncRNA processing | 8.05E-04 |
| 54 | GO:0006452: translational frameshifting | 8.05E-04 |
| 55 | GO:0009967: positive regulation of signal transduction | 8.05E-04 |
| 56 | GO:0010162: seed dormancy process | 8.35E-04 |
| 57 | GO:0042256: mature ribosome assembly | 1.30E-03 |
| 58 | GO:0006556: S-adenosylmethionine biosynthetic process | 1.30E-03 |
| 59 | GO:0006986: response to unfolded protein | 1.88E-03 |
| 60 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.88E-03 |
| 61 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.88E-03 |
| 62 | GO:0007276: gamete generation | 1.88E-03 |
| 63 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 1.88E-03 |
| 64 | GO:0006164: purine nucleotide biosynthetic process | 1.88E-03 |
| 65 | GO:0009855: determination of bilateral symmetry | 1.88E-03 |
| 66 | GO:0051131: chaperone-mediated protein complex assembly | 1.88E-03 |
| 67 | GO:0030150: protein import into mitochondrial matrix | 1.93E-03 |
| 68 | GO:0051302: regulation of cell division | 2.13E-03 |
| 69 | GO:0061077: chaperone-mediated protein folding | 2.35E-03 |
| 70 | GO:1900864: mitochondrial RNA modification | 2.52E-03 |
| 71 | GO:0051781: positive regulation of cell division | 2.52E-03 |
| 72 | GO:0051205: protein insertion into membrane | 2.52E-03 |
| 73 | GO:0000460: maturation of 5.8S rRNA | 2.52E-03 |
| 74 | GO:0009561: megagametogenesis | 3.04E-03 |
| 75 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 3.23E-03 |
| 76 | GO:0031365: N-terminal protein amino acid modification | 3.23E-03 |
| 77 | GO:0006461: protein complex assembly | 3.23E-03 |
| 78 | GO:0044209: AMP salvage | 3.23E-03 |
| 79 | GO:0010375: stomatal complex patterning | 3.23E-03 |
| 80 | GO:0010501: RNA secondary structure unwinding | 3.57E-03 |
| 81 | GO:0010197: polar nucleus fusion | 3.84E-03 |
| 82 | GO:0016554: cytidine to uridine editing | 3.99E-03 |
| 83 | GO:0000741: karyogamy | 3.99E-03 |
| 84 | GO:0006457: protein folding | 4.01E-03 |
| 85 | GO:0016444: somatic cell DNA recombination | 4.81E-03 |
| 86 | GO:0009955: adaxial/abaxial pattern specification | 4.81E-03 |
| 87 | GO:0042026: protein refolding | 4.81E-03 |
| 88 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.81E-03 |
| 89 | GO:0016569: covalent chromatin modification | 5.10E-03 |
| 90 | GO:0015031: protein transport | 5.38E-03 |
| 91 | GO:0010374: stomatal complex development | 5.68E-03 |
| 92 | GO:0080186: developmental vegetative growth | 5.68E-03 |
| 93 | GO:0043562: cellular response to nitrogen levels | 7.58E-03 |
| 94 | GO:0006002: fructose 6-phosphate metabolic process | 7.58E-03 |
| 95 | GO:0022900: electron transport chain | 7.58E-03 |
| 96 | GO:0001558: regulation of cell growth | 7.58E-03 |
| 97 | GO:0015780: nucleotide-sugar transport | 8.60E-03 |
| 98 | GO:0007338: single fertilization | 8.60E-03 |
| 99 | GO:0048507: meristem development | 8.60E-03 |
| 100 | GO:0010311: lateral root formation | 9.44E-03 |
| 101 | GO:1900865: chloroplast RNA modification | 9.67E-03 |
| 102 | GO:0010449: root meristem growth | 9.67E-03 |
| 103 | GO:0030422: production of siRNA involved in RNA interference | 1.08E-02 |
| 104 | GO:0006259: DNA metabolic process | 1.08E-02 |
| 105 | GO:0006879: cellular iron ion homeostasis | 1.19E-02 |
| 106 | GO:0006352: DNA-templated transcription, initiation | 1.19E-02 |
| 107 | GO:0016485: protein processing | 1.19E-02 |
| 108 | GO:0006913: nucleocytoplasmic transport | 1.19E-02 |
| 109 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.19E-02 |
| 110 | GO:0012501: programmed cell death | 1.32E-02 |
| 111 | GO:0006820: anion transport | 1.32E-02 |
| 112 | GO:0006108: malate metabolic process | 1.44E-02 |
| 113 | GO:2000012: regulation of auxin polar transport | 1.44E-02 |
| 114 | GO:0010030: positive regulation of seed germination | 1.70E-02 |
| 115 | GO:0009651: response to salt stress | 1.77E-02 |
| 116 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.98E-02 |
| 117 | GO:0010073: meristem maintenance | 2.12E-02 |
| 118 | GO:0006334: nucleosome assembly | 2.27E-02 |
| 119 | GO:0016226: iron-sulfur cluster assembly | 2.42E-02 |
| 120 | GO:0006730: one-carbon metabolic process | 2.42E-02 |
| 121 | GO:0009294: DNA mediated transformation | 2.58E-02 |
| 122 | GO:0040007: growth | 2.58E-02 |
| 123 | GO:0009693: ethylene biosynthetic process | 2.58E-02 |
| 124 | GO:0071215: cellular response to abscisic acid stimulus | 2.58E-02 |
| 125 | GO:0000413: protein peptidyl-prolyl isomerization | 3.06E-02 |
| 126 | GO:0006606: protein import into nucleus | 3.06E-02 |
| 127 | GO:0009960: endosperm development | 3.23E-02 |
| 128 | GO:0010305: leaf vascular tissue pattern formation | 3.23E-02 |
| 129 | GO:0006635: fatty acid beta-oxidation | 3.75E-02 |
| 130 | GO:0080156: mitochondrial mRNA modification | 3.75E-02 |
| 131 | GO:0016032: viral process | 3.93E-02 |
| 132 | GO:0071281: cellular response to iron ion | 4.11E-02 |
| 133 | GO:0009790: embryo development | 4.14E-02 |
| 134 | GO:0009567: double fertilization forming a zygote and endosperm | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 3 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 4 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 5.79E-63 |
| 6 | GO:0003746: translation elongation factor activity | 3.06E-14 |
| 7 | GO:0003723: RNA binding | 2.65E-13 |
| 8 | GO:0003729: mRNA binding | 1.51E-11 |
| 9 | GO:0019843: rRNA binding | 1.04E-08 |
| 10 | GO:0000166: nucleotide binding | 6.52E-08 |
| 11 | GO:0030515: snoRNA binding | 9.47E-08 |
| 12 | GO:0044183: protein binding involved in protein folding | 1.47E-06 |
| 13 | GO:0043021: ribonucleoprotein complex binding | 6.16E-06 |
| 14 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.26E-05 |
| 15 | GO:0008649: rRNA methyltransferase activity | 2.16E-05 |
| 16 | GO:0001055: RNA polymerase II activity | 3.50E-05 |
| 17 | GO:0003743: translation initiation factor activity | 1.14E-04 |
| 18 | GO:0051082: unfolded protein binding | 1.69E-04 |
| 19 | GO:0004407: histone deacetylase activity | 1.71E-04 |
| 20 | GO:0008026: ATP-dependent helicase activity | 1.90E-04 |
| 21 | GO:0008235: metalloexopeptidase activity | 3.30E-04 |
| 22 | GO:0008746: NAD(P)+ transhydrogenase activity | 3.70E-04 |
| 23 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 3.70E-04 |
| 24 | GO:0042134: rRNA primary transcript binding | 3.70E-04 |
| 25 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 3.70E-04 |
| 26 | GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase | 3.70E-04 |
| 27 | GO:0030371: translation repressor activity | 3.70E-04 |
| 28 | GO:0004828: serine-tRNA ligase activity | 3.70E-04 |
| 29 | GO:0004679: AMP-activated protein kinase activity | 3.70E-04 |
| 30 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 3.70E-04 |
| 31 | GO:0004001: adenosine kinase activity | 3.70E-04 |
| 32 | GO:0015288: porin activity | 4.14E-04 |
| 33 | GO:0008135: translation factor activity, RNA binding | 5.06E-04 |
| 34 | GO:0036455: iron-sulfur transferase activity | 8.05E-04 |
| 35 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 8.05E-04 |
| 36 | GO:0005078: MAP-kinase scaffold activity | 8.05E-04 |
| 37 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 8.05E-04 |
| 38 | GO:0001054: RNA polymerase I activity | 9.61E-04 |
| 39 | GO:0001056: RNA polymerase III activity | 1.10E-03 |
| 40 | GO:0004004: ATP-dependent RNA helicase activity | 1.13E-03 |
| 41 | GO:0009982: pseudouridine synthase activity | 1.24E-03 |
| 42 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.30E-03 |
| 43 | GO:0004478: methionine adenosyltransferase activity | 1.30E-03 |
| 44 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.30E-03 |
| 45 | GO:0070181: small ribosomal subunit rRNA binding | 1.30E-03 |
| 46 | GO:0005507: copper ion binding | 1.47E-03 |
| 47 | GO:0050897: cobalt ion binding | 1.54E-03 |
| 48 | GO:0051087: chaperone binding | 2.13E-03 |
| 49 | GO:0008198: ferrous iron binding | 3.23E-03 |
| 50 | GO:0004040: amidase activity | 3.23E-03 |
| 51 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-03 |
| 52 | GO:0016615: malate dehydrogenase activity | 3.99E-03 |
| 53 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 3.99E-03 |
| 54 | GO:0019887: protein kinase regulator activity | 4.81E-03 |
| 55 | GO:0030060: L-malate dehydrogenase activity | 4.81E-03 |
| 56 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 5.68E-03 |
| 57 | GO:0003872: 6-phosphofructokinase activity | 5.68E-03 |
| 58 | GO:0043022: ribosome binding | 6.61E-03 |
| 59 | GO:0005524: ATP binding | 7.03E-03 |
| 60 | GO:0008308: voltage-gated anion channel activity | 7.58E-03 |
| 61 | GO:0003678: DNA helicase activity | 8.60E-03 |
| 62 | GO:0003924: GTPase activity | 1.15E-02 |
| 63 | GO:0004177: aminopeptidase activity | 1.19E-02 |
| 64 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.30E-02 |
| 65 | GO:0000049: tRNA binding | 1.32E-02 |
| 66 | GO:0015114: phosphate ion transmembrane transporter activity | 1.44E-02 |
| 67 | GO:0015266: protein channel activity | 1.44E-02 |
| 68 | GO:0005216: ion channel activity | 2.12E-02 |
| 69 | GO:0004176: ATP-dependent peptidase activity | 2.27E-02 |
| 70 | GO:0008536: Ran GTPase binding | 3.23E-02 |
| 71 | GO:0010181: FMN binding | 3.40E-02 |
| 72 | GO:0005515: protein binding | 4.12E-02 |
| 73 | GO:0008565: protein transporter activity | 4.24E-02 |
| 74 | GO:0008483: transaminase activity | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 2.73E-45 |
| 6 | GO:0022626: cytosolic ribosome | 6.82E-37 |
| 7 | GO:0005840: ribosome | 2.88E-35 |
| 8 | GO:0022625: cytosolic large ribosomal subunit | 6.16E-35 |
| 9 | GO:0022627: cytosolic small ribosomal subunit | 3.78E-29 |
| 10 | GO:0005829: cytosol | 6.91E-19 |
| 11 | GO:0009506: plasmodesma | 6.82E-13 |
| 12 | GO:0015934: large ribosomal subunit | 8.14E-13 |
| 13 | GO:0032040: small-subunit processome | 3.71E-12 |
| 14 | GO:0005737: cytoplasm | 2.20E-11 |
| 15 | GO:0015935: small ribosomal subunit | 3.30E-07 |
| 16 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 4.47E-07 |
| 17 | GO:0005774: vacuolar membrane | 4.98E-07 |
| 18 | GO:0005618: cell wall | 1.23E-06 |
| 19 | GO:0031428: box C/D snoRNP complex | 3.23E-06 |
| 20 | GO:0070545: PeBoW complex | 6.16E-06 |
| 21 | GO:0005759: mitochondrial matrix | 6.26E-06 |
| 22 | GO:0005773: vacuole | 7.83E-06 |
| 23 | GO:0030687: preribosome, large subunit precursor | 8.89E-06 |
| 24 | GO:0005834: heterotrimeric G-protein complex | 1.31E-05 |
| 25 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.16E-05 |
| 26 | GO:0015030: Cajal body | 3.50E-05 |
| 27 | GO:0016020: membrane | 3.83E-05 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.55E-05 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 7.16E-05 |
| 30 | GO:0005743: mitochondrial inner membrane | 1.46E-04 |
| 31 | GO:0005758: mitochondrial intermembrane space | 1.71E-04 |
| 32 | GO:0031359: integral component of chloroplast outer membrane | 3.30E-04 |
| 33 | GO:0005739: mitochondrion | 3.32E-04 |
| 34 | GO:0030686: 90S preribosome | 3.70E-04 |
| 35 | GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex | 3.70E-04 |
| 36 | GO:0046930: pore complex | 5.06E-04 |
| 37 | GO:0005742: mitochondrial outer membrane translocase complex | 5.06E-04 |
| 38 | GO:0005736: DNA-directed RNA polymerase I complex | 6.07E-04 |
| 39 | GO:0005666: DNA-directed RNA polymerase III complex | 7.16E-04 |
| 40 | GO:0005747: mitochondrial respiratory chain complex I | 8.11E-04 |
| 41 | GO:0005852: eukaryotic translation initiation factor 3 complex | 9.61E-04 |
| 42 | GO:0019013: viral nucleocapsid | 1.24E-03 |
| 43 | GO:0000419: DNA-directed RNA polymerase V complex | 1.74E-03 |
| 44 | GO:0031429: box H/ACA snoRNP complex | 1.88E-03 |
| 45 | GO:0005741: mitochondrial outer membrane | 2.35E-03 |
| 46 | GO:0009507: chloroplast | 2.52E-03 |
| 47 | GO:0016272: prefoldin complex | 4.81E-03 |
| 48 | GO:0031597: cytosolic proteasome complex | 4.81E-03 |
| 49 | GO:0016363: nuclear matrix | 4.81E-03 |
| 50 | GO:0034399: nuclear periphery | 6.61E-03 |
| 51 | GO:0030529: intracellular ribonucleoprotein complex | 6.87E-03 |
| 52 | GO:0005763: mitochondrial small ribosomal subunit | 8.60E-03 |
| 53 | GO:0008180: COP9 signalosome | 8.60E-03 |
| 54 | GO:0009532: plastid stroma | 2.27E-02 |
| 55 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 2.73E-02 |
| 56 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.09E-02 |
| 57 | GO:0005654: nucleoplasm | 3.46E-02 |
| 58 | GO:0009536: plastid | 3.88E-02 |
| 59 | GO:0016592: mediator complex | 3.93E-02 |
| 60 | GO:0010319: stromule | 4.49E-02 |