Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G22620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
3GO:0090627: plant epidermal cell differentiation0.00E+00
4GO:1905177: tracheary element differentiation0.00E+00
5GO:0000023: maltose metabolic process0.00E+00
6GO:1905421: regulation of plant organ morphogenesis0.00E+00
7GO:0002184: cytoplasmic translational termination0.00E+00
8GO:0030155: regulation of cell adhesion0.00E+00
9GO:0019323: pentose catabolic process0.00E+00
10GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
13GO:0006223: uracil salvage0.00E+00
14GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
15GO:0015979: photosynthesis3.84E-12
16GO:0032544: plastid translation5.21E-12
17GO:0006412: translation5.84E-11
18GO:0009735: response to cytokinin3.93E-10
19GO:0009409: response to cold3.51E-09
20GO:0042254: ribosome biogenesis4.03E-09
21GO:0005983: starch catabolic process1.22E-08
22GO:0019252: starch biosynthetic process1.86E-08
23GO:0019464: glycine decarboxylation via glycine cleavage system3.87E-07
24GO:0009773: photosynthetic electron transport in photosystem I6.52E-07
25GO:0030388: fructose 1,6-bisphosphate metabolic process3.83E-06
26GO:0006000: fructose metabolic process1.37E-05
27GO:0005982: starch metabolic process1.95E-05
28GO:0010021: amylopectin biosynthetic process5.52E-05
29GO:0015995: chlorophyll biosynthetic process7.13E-05
30GO:0009658: chloroplast organization9.29E-05
31GO:0042742: defense response to bacterium1.03E-04
32GO:0009631: cold acclimation1.13E-04
33GO:0010196: nonphotochemical quenching2.27E-04
34GO:0045454: cell redox homeostasis2.33E-04
35GO:0005978: glycogen biosynthetic process2.87E-04
36GO:0043489: RNA stabilization2.89E-04
37GO:0044262: cellular carbohydrate metabolic process2.89E-04
38GO:0071588: hydrogen peroxide mediated signaling pathway2.89E-04
39GO:0000025: maltose catabolic process2.89E-04
40GO:0005980: glycogen catabolic process2.89E-04
41GO:0006002: fructose 6-phosphate metabolic process3.53E-04
42GO:0010206: photosystem II repair4.25E-04
43GO:0010027: thylakoid membrane organization5.86E-04
44GO:0006782: protoporphyrinogen IX biosynthetic process5.88E-04
45GO:0005976: polysaccharide metabolic process6.34E-04
46GO:0007154: cell communication6.34E-04
47GO:0010270: photosystem II oxygen evolving complex assembly6.34E-04
48GO:0009629: response to gravity6.34E-04
49GO:0009817: defense response to fungus, incompatible interaction8.19E-04
50GO:0006094: gluconeogenesis8.76E-04
51GO:0005986: sucrose biosynthetic process8.76E-04
52GO:0006518: peptide metabolic process1.03E-03
53GO:0010623: programmed cell death involved in cell development1.03E-03
54GO:0090153: regulation of sphingolipid biosynthetic process1.03E-03
55GO:0048281: inflorescence morphogenesis1.03E-03
56GO:0034599: cellular response to oxidative stress1.16E-03
57GO:0010025: wax biosynthetic process1.22E-03
58GO:0006289: nucleotide-excision repair1.35E-03
59GO:0006165: nucleoside diphosphate phosphorylation1.47E-03
60GO:0010731: protein glutathionylation1.47E-03
61GO:0006228: UTP biosynthetic process1.47E-03
62GO:0010148: transpiration1.47E-03
63GO:0006424: glutamyl-tRNA aminoacylation1.47E-03
64GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.47E-03
65GO:0006241: CTP biosynthetic process1.47E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch1.47E-03
67GO:0007017: microtubule-based process1.49E-03
68GO:0006546: glycine catabolic process1.97E-03
69GO:0010508: positive regulation of autophagy1.97E-03
70GO:0044206: UMP salvage1.97E-03
71GO:0010037: response to carbon dioxide1.97E-03
72GO:0006808: regulation of nitrogen utilization1.97E-03
73GO:0015976: carbon utilization1.97E-03
74GO:0009765: photosynthesis, light harvesting1.97E-03
75GO:0006109: regulation of carbohydrate metabolic process1.97E-03
76GO:0006183: GTP biosynthetic process1.97E-03
77GO:0045727: positive regulation of translation1.97E-03
78GO:2000122: negative regulation of stomatal complex development1.97E-03
79GO:0000413: protein peptidyl-prolyl isomerization2.48E-03
80GO:0006544: glycine metabolic process2.52E-03
81GO:0032543: mitochondrial translation2.52E-03
82GO:0043097: pyrimidine nucleoside salvage2.52E-03
83GO:0006461: protein complex assembly2.52E-03
84GO:0010190: cytochrome b6f complex assembly3.11E-03
85GO:0006206: pyrimidine nucleobase metabolic process3.11E-03
86GO:0006014: D-ribose metabolic process3.11E-03
87GO:0006563: L-serine metabolic process3.11E-03
88GO:0042549: photosystem II stabilization3.11E-03
89GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.11E-03
90GO:0000470: maturation of LSU-rRNA3.11E-03
91GO:0009913: epidermal cell differentiation3.11E-03
92GO:0006828: manganese ion transport3.11E-03
93GO:0000302: response to reactive oxygen species3.30E-03
94GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.74E-03
95GO:1901259: chloroplast rRNA processing3.74E-03
96GO:0010019: chloroplast-nucleus signaling pathway3.74E-03
97GO:0009955: adaxial/abaxial pattern specification3.74E-03
98GO:0055114: oxidation-reduction process4.28E-03
99GO:0070370: cellular heat acclimation4.41E-03
100GO:0009645: response to low light intensity stimulus4.41E-03
101GO:0010103: stomatal complex morphogenesis4.41E-03
102GO:0009704: de-etiolation5.12E-03
103GO:0008610: lipid biosynthetic process5.12E-03
104GO:0009657: plastid organization5.87E-03
105GO:0017004: cytochrome complex assembly5.87E-03
106GO:0001558: regulation of cell growth5.87E-03
107GO:0006783: heme biosynthetic process6.65E-03
108GO:0007623: circadian rhythm6.93E-03
109GO:0006779: porphyrin-containing compound biosynthetic process7.48E-03
110GO:0035999: tetrahydrofolate interconversion7.48E-03
111GO:0042761: very long-chain fatty acid biosynthetic process7.48E-03
112GO:0009853: photorespiration7.88E-03
113GO:0043085: positive regulation of catalytic activity9.22E-03
114GO:0006415: translational termination9.22E-03
115GO:0009750: response to fructose9.22E-03
116GO:0016485: protein processing9.22E-03
117GO:0006816: calcium ion transport9.22E-03
118GO:0010102: lateral root morphogenesis1.11E-02
119GO:0009767: photosynthetic electron transport chain1.11E-02
120GO:0010020: chloroplast fission1.21E-02
121GO:0010207: photosystem II assembly1.21E-02
122GO:0019253: reductive pentose-phosphate cycle1.21E-02
123GO:0009266: response to temperature stimulus1.21E-02
124GO:0005985: sucrose metabolic process1.31E-02
125GO:0009585: red, far-red light phototransduction1.38E-02
126GO:0051017: actin filament bundle assembly1.52E-02
127GO:0009116: nucleoside metabolic process1.52E-02
128GO:0009944: polarity specification of adaxial/abaxial axis1.52E-02
129GO:0000027: ribosomal large subunit assembly1.52E-02
130GO:0006508: proteolysis1.60E-02
131GO:0009768: photosynthesis, light harvesting in photosystem I1.63E-02
132GO:0051302: regulation of cell division1.63E-02
133GO:0006418: tRNA aminoacylation for protein translation1.63E-02
134GO:0016114: terpenoid biosynthetic process1.75E-02
135GO:0061077: chaperone-mediated protein folding1.75E-02
136GO:0035428: hexose transmembrane transport1.86E-02
137GO:0009624: response to nematode1.96E-02
138GO:0009686: gibberellin biosynthetic process1.98E-02
139GO:0009411: response to UV1.98E-02
140GO:0001944: vasculature development1.98E-02
141GO:0006284: base-excision repair2.10E-02
142GO:0010089: xylem development2.10E-02
143GO:0070417: cellular response to cold2.23E-02
144GO:0042335: cuticle development2.35E-02
145GO:0006662: glycerol ether metabolic process2.48E-02
146GO:0048868: pollen tube development2.48E-02
147GO:0046323: glucose import2.48E-02
148GO:0015986: ATP synthesis coupled proton transport2.61E-02
149GO:0048825: cotyledon development2.75E-02
150GO:0042744: hydrogen peroxide catabolic process2.80E-02
151GO:0006810: transport2.84E-02
152GO:0009790: embryo development2.87E-02
153GO:0032502: developmental process3.02E-02
154GO:0010583: response to cyclopentenone3.02E-02
155GO:0006633: fatty acid biosynthetic process3.09E-02
156GO:0046686: response to cadmium ion3.13E-02
157GO:0030163: protein catabolic process3.16E-02
158GO:0006310: DNA recombination3.31E-02
159GO:0016311: dephosphorylation4.37E-02
160GO:0006979: response to oxidative stress4.46E-02
161GO:0018298: protein-chromophore linkage4.53E-02
162GO:0048481: plant ovule development4.53E-02
163GO:0009813: flavonoid biosynthetic process4.69E-02
164GO:0010218: response to far red light4.85E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0051060: pullulanase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0009899: ent-kaurene synthase activity0.00E+00
5GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
6GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
7GO:0051738: xanthophyll binding0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0005363: maltose transmembrane transporter activity0.00E+00
10GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
11GO:0010303: limit dextrinase activity0.00E+00
12GO:0019843: rRNA binding1.78E-18
13GO:0003735: structural constituent of ribosome6.53E-14
14GO:0008266: poly(U) RNA binding1.65E-06
15GO:0051920: peroxiredoxin activity2.96E-06
16GO:0033201: alpha-1,4-glucan synthase activity3.83E-06
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.83E-06
18GO:0016209: antioxidant activity7.22E-06
19GO:0004373: glycogen (starch) synthase activity1.37E-05
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.54E-05
21GO:0004375: glycine dehydrogenase (decarboxylating) activity3.07E-05
22GO:0009011: starch synthase activity5.52E-05
23GO:0005528: FK506 binding1.02E-04
24GO:0004130: cytochrome-c peroxidase activity1.27E-04
25GO:0004645: phosphorylase activity2.89E-04
26GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity2.89E-04
27GO:0004853: uroporphyrinogen decarboxylase activity2.89E-04
28GO:0019203: carbohydrate phosphatase activity2.89E-04
29GO:0008158: hedgehog receptor activity2.89E-04
30GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity2.89E-04
31GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.89E-04
32GO:0008184: glycogen phosphorylase activity2.89E-04
33GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.89E-04
34GO:0004856: xylulokinase activity2.89E-04
35GO:0009496: plastoquinol--plastocyanin reductase activity2.89E-04
36GO:0005534: galactose binding2.89E-04
37GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.89E-04
38GO:0004134: 4-alpha-glucanotransferase activity2.89E-04
39GO:0008967: phosphoglycolate phosphatase activity6.34E-04
40GO:0010297: heteropolysaccharide binding6.34E-04
41GO:0004750: ribulose-phosphate 3-epimerase activity6.34E-04
42GO:0018708: thiol S-methyltransferase activity6.34E-04
43GO:0003844: 1,4-alpha-glucan branching enzyme activity6.34E-04
44GO:0004222: metalloendopeptidase activity9.24E-04
45GO:0004252: serine-type endopeptidase activity9.68E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity1.03E-03
47GO:0017108: 5'-flap endonuclease activity1.03E-03
48GO:0045174: glutathione dehydrogenase (ascorbate) activity1.03E-03
49GO:0030267: glyoxylate reductase (NADP) activity1.03E-03
50GO:0004324: ferredoxin-NADP+ reductase activity1.03E-03
51GO:0043169: cation binding1.03E-03
52GO:0017150: tRNA dihydrouridine synthase activity1.03E-03
53GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.03E-03
54GO:0005504: fatty acid binding1.03E-03
55GO:0002161: aminoacyl-tRNA editing activity1.03E-03
56GO:0016149: translation release factor activity, codon specific1.47E-03
57GO:0016851: magnesium chelatase activity1.47E-03
58GO:0004550: nucleoside diphosphate kinase activity1.47E-03
59GO:0043023: ribosomal large subunit binding1.47E-03
60GO:0019199: transmembrane receptor protein kinase activity1.97E-03
61GO:0008878: glucose-1-phosphate adenylyltransferase activity1.97E-03
62GO:0042277: peptide binding1.97E-03
63GO:0004845: uracil phosphoribosyltransferase activity1.97E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.97E-03
65GO:0019104: DNA N-glycosylase activity1.97E-03
66GO:0045430: chalcone isomerase activity1.97E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor2.52E-03
68GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.52E-03
69GO:0004372: glycine hydroxymethyltransferase activity2.52E-03
70GO:0003959: NADPH dehydrogenase activity2.52E-03
71GO:0004601: peroxidase activity2.61E-03
72GO:0050662: coenzyme binding2.87E-03
73GO:0004556: alpha-amylase activity3.11E-03
74GO:0016688: L-ascorbate peroxidase activity3.11E-03
75GO:2001070: starch binding3.11E-03
76GO:0048038: quinone binding3.30E-03
77GO:0004849: uridine kinase activity3.74E-03
78GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.74E-03
79GO:0004747: ribokinase activity3.74E-03
80GO:0004602: glutathione peroxidase activity3.74E-03
81GO:0005200: structural constituent of cytoskeleton4.24E-03
82GO:0004620: phospholipase activity4.41E-03
83GO:0016168: chlorophyll binding5.03E-03
84GO:0008865: fructokinase activity5.12E-03
85GO:0015078: hydrogen ion transmembrane transporter activity5.87E-03
86GO:0008236: serine-type peptidase activity5.91E-03
87GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.65E-03
88GO:0003747: translation release factor activity6.65E-03
89GO:0005384: manganese ion transmembrane transporter activity7.48E-03
90GO:0016491: oxidoreductase activity8.01E-03
91GO:0008047: enzyme activator activity8.33E-03
92GO:0044183: protein binding involved in protein folding9.22E-03
93GO:0047372: acylglycerol lipase activity9.22E-03
94GO:0015386: potassium:proton antiporter activity9.22E-03
95GO:0000049: tRNA binding1.01E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.11E-02
97GO:0004089: carbonate dehydratase activity1.11E-02
98GO:0015095: magnesium ion transmembrane transporter activity1.11E-02
99GO:0031072: heat shock protein binding1.11E-02
100GO:0031409: pigment binding1.41E-02
101GO:0004857: enzyme inhibitor activity1.52E-02
102GO:0015079: potassium ion transmembrane transporter activity1.63E-02
103GO:0022891: substrate-specific transmembrane transporter activity1.98E-02
104GO:0016787: hydrolase activity2.04E-02
105GO:0047134: protein-disulfide reductase activity2.23E-02
106GO:0004812: aminoacyl-tRNA ligase activity2.23E-02
107GO:0003924: GTPase activity2.60E-02
108GO:0004791: thioredoxin-disulfide reductase activity2.61E-02
109GO:0005355: glucose transmembrane transporter activity2.61E-02
110GO:0030170: pyridoxal phosphate binding2.73E-02
111GO:0004518: nuclease activity3.02E-02
112GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.16E-02
113GO:0051015: actin filament binding3.16E-02
114GO:0005525: GTP binding3.27E-02
115GO:0003684: damaged DNA binding3.31E-02
116GO:0008237: metallopeptidase activity3.45E-02
117GO:0030247: polysaccharide binding4.21E-02
118GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.30E-02
RankGO TermAdjusted P value
1GO:0033557: Slx1-Slx4 complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0009507: chloroplast6.44E-83
5GO:0009570: chloroplast stroma3.13E-66
6GO:0009941: chloroplast envelope2.78E-60
7GO:0009534: chloroplast thylakoid2.15E-49
8GO:0009579: thylakoid3.45E-41
9GO:0009535: chloroplast thylakoid membrane7.79E-38
10GO:0009543: chloroplast thylakoid lumen7.29E-17
11GO:0031977: thylakoid lumen1.12E-14
12GO:0005840: ribosome2.94E-14
13GO:0010319: stromule1.30E-09
14GO:0010287: plastoglobule1.58E-09
15GO:0016020: membrane3.74E-06
16GO:0009533: chloroplast stromal thylakoid4.76E-06
17GO:0009501: amyloplast7.22E-06
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.45E-05
19GO:0005960: glycine cleavage complex3.07E-05
20GO:0030095: chloroplast photosystem II6.11E-05
21GO:0009706: chloroplast inner membrane7.88E-05
22GO:0048046: apoplast1.54E-04
23GO:0009536: plastid1.95E-04
24GO:0009538: photosystem I reaction center2.87E-04
25GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.89E-04
26GO:0009523: photosystem II3.32E-04
27GO:0045298: tubulin complex4.25E-04
28GO:0009295: nucleoid5.05E-04
29GO:0031357: integral component of chloroplast inner membrane6.34E-04
30GO:0030093: chloroplast photosystem I6.34E-04
31GO:0000311: plastid large ribosomal subunit7.74E-04
32GO:0031969: chloroplast membrane8.01E-04
33GO:0009508: plastid chromosome8.76E-04
34GO:0010007: magnesium chelatase complex1.03E-03
35GO:0009654: photosystem II oxygen evolving complex1.49E-03
36GO:0009517: PSII associated light-harvesting complex II1.97E-03
37GO:0055035: plastid thylakoid membrane2.52E-03
38GO:0009512: cytochrome b6f complex2.52E-03
39GO:0019898: extrinsic component of membrane3.08E-03
40GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.11E-03
41GO:0009840: chloroplastic endopeptidase Clp complex3.74E-03
42GO:0022625: cytosolic large ribosomal subunit3.92E-03
43GO:0042644: chloroplast nucleoid6.65E-03
44GO:0005763: mitochondrial small ribosomal subunit6.65E-03
45GO:0015934: large ribosomal subunit7.19E-03
46GO:0000312: plastid small ribosomal subunit1.21E-02
47GO:0030076: light-harvesting complex1.31E-02
48GO:0042651: thylakoid membrane1.63E-02
49GO:0009532: plastid stroma1.75E-02
50GO:0015935: small ribosomal subunit1.75E-02
51GO:0015629: actin cytoskeleton1.98E-02
52GO:0009522: photosystem I2.61E-02
53GO:0005759: mitochondrial matrix3.09E-02
54GO:0030529: intracellular ribonucleoprotein complex3.75E-02
55GO:0022626: cytosolic ribosome4.98E-02
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Gene type



Gene DE type