GO Enrichment Analysis of Co-expressed Genes with
AT5G22390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:0015678: high-affinity copper ion transport | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 7 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 8 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 9 | GO:0015979: photosynthesis | 3.44E-10 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 1.42E-05 |
| 11 | GO:0018298: protein-chromophore linkage | 1.76E-05 |
| 12 | GO:0006021: inositol biosynthetic process | 2.06E-05 |
| 13 | GO:0046855: inositol phosphate dephosphorylation | 4.99E-05 |
| 14 | GO:0048564: photosystem I assembly | 1.20E-04 |
| 15 | GO:0019761: glucosinolate biosynthetic process | 1.29E-04 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 1.62E-04 |
| 17 | GO:0042371: vitamin K biosynthetic process | 1.62E-04 |
| 18 | GO:0010028: xanthophyll cycle | 1.62E-04 |
| 19 | GO:0006419: alanyl-tRNA aminoacylation | 1.62E-04 |
| 20 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.62E-04 |
| 21 | GO:0071277: cellular response to calcium ion | 1.62E-04 |
| 22 | GO:0033506: glucosinolate biosynthetic process from homomethionine | 1.62E-04 |
| 23 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.62E-04 |
| 24 | GO:0009098: leucine biosynthetic process | 2.20E-04 |
| 25 | GO:0009773: photosynthetic electron transport in photosystem I | 3.02E-04 |
| 26 | GO:0006790: sulfur compound metabolic process | 3.48E-04 |
| 27 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.69E-04 |
| 28 | GO:2000030: regulation of response to red or far red light | 3.69E-04 |
| 29 | GO:0006435: threonyl-tRNA aminoacylation | 3.69E-04 |
| 30 | GO:0009629: response to gravity | 3.69E-04 |
| 31 | GO:0019752: carboxylic acid metabolic process | 3.69E-04 |
| 32 | GO:0030187: melatonin biosynthetic process | 3.69E-04 |
| 33 | GO:0000256: allantoin catabolic process | 3.69E-04 |
| 34 | GO:0046854: phosphatidylinositol phosphorylation | 5.00E-04 |
| 35 | GO:0010114: response to red light | 5.41E-04 |
| 36 | GO:0009405: pathogenesis | 6.04E-04 |
| 37 | GO:0090391: granum assembly | 6.04E-04 |
| 38 | GO:0010136: ureide catabolic process | 6.04E-04 |
| 39 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.78E-04 |
| 40 | GO:0055114: oxidation-reduction process | 8.03E-04 |
| 41 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 8.63E-04 |
| 42 | GO:0006020: inositol metabolic process | 8.63E-04 |
| 43 | GO:0090307: mitotic spindle assembly | 8.63E-04 |
| 44 | GO:0006145: purine nucleobase catabolic process | 8.63E-04 |
| 45 | GO:0042989: sequestering of actin monomers | 8.63E-04 |
| 46 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 8.63E-04 |
| 47 | GO:0046739: transport of virus in multicellular host | 8.63E-04 |
| 48 | GO:0009735: response to cytokinin | 8.64E-04 |
| 49 | GO:0009765: photosynthesis, light harvesting | 1.14E-03 |
| 50 | GO:0031122: cytoplasmic microtubule organization | 1.14E-03 |
| 51 | GO:0009793: embryo development ending in seed dormancy | 1.42E-03 |
| 52 | GO:0035434: copper ion transmembrane transport | 1.45E-03 |
| 53 | GO:0006656: phosphatidylcholine biosynthetic process | 1.45E-03 |
| 54 | GO:0016558: protein import into peroxisome matrix | 1.45E-03 |
| 55 | GO:0030041: actin filament polymerization | 1.45E-03 |
| 56 | GO:0009643: photosynthetic acclimation | 1.78E-03 |
| 57 | GO:0010189: vitamin E biosynthetic process | 2.14E-03 |
| 58 | GO:0071470: cellular response to osmotic stress | 2.14E-03 |
| 59 | GO:1901259: chloroplast rRNA processing | 2.14E-03 |
| 60 | GO:0009451: RNA modification | 2.49E-03 |
| 61 | GO:0009772: photosynthetic electron transport in photosystem II | 2.52E-03 |
| 62 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.52E-03 |
| 63 | GO:0009645: response to low light intensity stimulus | 2.52E-03 |
| 64 | GO:0006400: tRNA modification | 2.52E-03 |
| 65 | GO:0051510: regulation of unidimensional cell growth | 2.52E-03 |
| 66 | GO:0031540: regulation of anthocyanin biosynthetic process | 2.91E-03 |
| 67 | GO:0009231: riboflavin biosynthetic process | 2.91E-03 |
| 68 | GO:0009642: response to light intensity | 2.91E-03 |
| 69 | GO:0030091: protein repair | 2.91E-03 |
| 70 | GO:0009704: de-etiolation | 2.91E-03 |
| 71 | GO:0009407: toxin catabolic process | 3.01E-03 |
| 72 | GO:0010218: response to far red light | 3.01E-03 |
| 73 | GO:0009657: plastid organization | 3.33E-03 |
| 74 | GO:0009637: response to blue light | 3.46E-03 |
| 75 | GO:0006979: response to oxidative stress | 3.52E-03 |
| 76 | GO:0000373: Group II intron splicing | 3.77E-03 |
| 77 | GO:0098656: anion transmembrane transport | 3.77E-03 |
| 78 | GO:0009821: alkaloid biosynthetic process | 3.77E-03 |
| 79 | GO:0090333: regulation of stomatal closure | 3.77E-03 |
| 80 | GO:0009658: chloroplast organization | 4.21E-03 |
| 81 | GO:0009638: phototropism | 4.22E-03 |
| 82 | GO:0009416: response to light stimulus | 4.44E-03 |
| 83 | GO:0006949: syncytium formation | 4.69E-03 |
| 84 | GO:0006259: DNA metabolic process | 4.69E-03 |
| 85 | GO:0009644: response to high light intensity | 4.81E-03 |
| 86 | GO:0009636: response to toxic substance | 4.99E-03 |
| 87 | GO:0006265: DNA topological change | 5.19E-03 |
| 88 | GO:0080167: response to karrikin | 5.53E-03 |
| 89 | GO:0009585: red, far-red light phototransduction | 5.99E-03 |
| 90 | GO:0010224: response to UV-B | 6.20E-03 |
| 91 | GO:0009725: response to hormone | 6.22E-03 |
| 92 | GO:0009767: photosynthetic electron transport chain | 6.22E-03 |
| 93 | GO:0006006: glucose metabolic process | 6.22E-03 |
| 94 | GO:0019253: reductive pentose-phosphate cycle | 6.76E-03 |
| 95 | GO:0090351: seedling development | 7.32E-03 |
| 96 | GO:0019853: L-ascorbic acid biosynthetic process | 7.32E-03 |
| 97 | GO:0006863: purine nucleobase transport | 7.90E-03 |
| 98 | GO:0009863: salicylic acid mediated signaling pathway | 8.48E-03 |
| 99 | GO:0007010: cytoskeleton organization | 8.48E-03 |
| 100 | GO:0080147: root hair cell development | 8.48E-03 |
| 101 | GO:0006825: copper ion transport | 9.09E-03 |
| 102 | GO:0007017: microtubule-based process | 9.09E-03 |
| 103 | GO:0009269: response to desiccation | 9.72E-03 |
| 104 | GO:0006730: one-carbon metabolic process | 1.04E-02 |
| 105 | GO:0009625: response to insect | 1.10E-02 |
| 106 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.10E-02 |
| 107 | GO:0009845: seed germination | 1.16E-02 |
| 108 | GO:0009306: protein secretion | 1.17E-02 |
| 109 | GO:0006606: protein import into nucleus | 1.31E-02 |
| 110 | GO:0048868: pollen tube development | 1.38E-02 |
| 111 | GO:0007059: chromosome segregation | 1.45E-02 |
| 112 | GO:0015986: ATP synthesis coupled proton transport | 1.45E-02 |
| 113 | GO:0008654: phospholipid biosynthetic process | 1.52E-02 |
| 114 | GO:0009791: post-embryonic development | 1.52E-02 |
| 115 | GO:0006635: fatty acid beta-oxidation | 1.60E-02 |
| 116 | GO:0010193: response to ozone | 1.60E-02 |
| 117 | GO:0016032: viral process | 1.67E-02 |
| 118 | GO:0009828: plant-type cell wall loosening | 1.83E-02 |
| 119 | GO:0006810: transport | 2.30E-02 |
| 120 | GO:0042254: ribosome biogenesis | 2.34E-02 |
| 121 | GO:0009817: defense response to fungus, incompatible interaction | 2.51E-02 |
| 122 | GO:0009813: flavonoid biosynthetic process | 2.60E-02 |
| 123 | GO:0006811: ion transport | 2.69E-02 |
| 124 | GO:0048527: lateral root development | 2.78E-02 |
| 125 | GO:0009853: photorespiration | 2.97E-02 |
| 126 | GO:0009867: jasmonic acid mediated signaling pathway | 2.97E-02 |
| 127 | GO:0034599: cellular response to oxidative stress | 3.06E-02 |
| 128 | GO:0009926: auxin polar transport | 3.55E-02 |
| 129 | GO:0009744: response to sucrose | 3.55E-02 |
| 130 | GO:0032259: methylation | 4.01E-02 |
| 131 | GO:0009664: plant-type cell wall organization | 4.18E-02 |
| 132 | GO:0006364: rRNA processing | 4.39E-02 |
| 133 | GO:0006857: oligopeptide transport | 4.61E-02 |
| 134 | GO:0006417: regulation of translation | 4.72E-02 |
| 135 | GO:0006096: glycolytic process | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 4 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 5 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 6 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 7 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 8 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 9 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 10 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 11 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 12 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 13 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.29E-06 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.29E-06 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.29E-06 |
| 17 | GO:0016168: chlorophyll binding | 1.13E-05 |
| 18 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 6.99E-05 |
| 19 | GO:0019899: enzyme binding | 9.33E-05 |
| 20 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.62E-04 |
| 21 | GO:0004451: isocitrate lyase activity | 1.62E-04 |
| 22 | GO:0004813: alanine-tRNA ligase activity | 1.62E-04 |
| 23 | GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity | 1.62E-04 |
| 24 | GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity | 1.62E-04 |
| 25 | GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity | 3.69E-04 |
| 26 | GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity | 3.69E-04 |
| 27 | GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity | 3.69E-04 |
| 28 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.69E-04 |
| 29 | GO:0004829: threonine-tRNA ligase activity | 3.69E-04 |
| 30 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 3.69E-04 |
| 31 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 3.69E-04 |
| 32 | GO:0004364: glutathione transferase activity | 5.15E-04 |
| 33 | GO:0031409: pigment binding | 5.56E-04 |
| 34 | GO:0070402: NADPH binding | 6.04E-04 |
| 35 | GO:0015089: high-affinity copper ion transmembrane transporter activity | 6.04E-04 |
| 36 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.04E-04 |
| 37 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.04E-04 |
| 38 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.04E-04 |
| 39 | GO:0003861: 3-isopropylmalate dehydratase activity | 6.04E-04 |
| 40 | GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity | 6.04E-04 |
| 41 | GO:0016851: magnesium chelatase activity | 8.63E-04 |
| 42 | GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity | 8.63E-04 |
| 43 | GO:0022891: substrate-specific transmembrane transporter activity | 8.83E-04 |
| 44 | GO:0016836: hydro-lyase activity | 1.14E-03 |
| 45 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.14E-03 |
| 46 | GO:0008453: alanine-glyoxylate transaminase activity | 1.14E-03 |
| 47 | GO:0043015: gamma-tubulin binding | 1.14E-03 |
| 48 | GO:0043495: protein anchor | 1.14E-03 |
| 49 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.14E-03 |
| 50 | GO:0051011: microtubule minus-end binding | 1.45E-03 |
| 51 | GO:0003785: actin monomer binding | 1.45E-03 |
| 52 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.78E-03 |
| 53 | GO:0000293: ferric-chelate reductase activity | 1.78E-03 |
| 54 | GO:0035673: oligopeptide transmembrane transporter activity | 1.78E-03 |
| 55 | GO:0042578: phosphoric ester hydrolase activity | 1.78E-03 |
| 56 | GO:0008195: phosphatidate phosphatase activity | 2.14E-03 |
| 57 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.14E-03 |
| 58 | GO:0015631: tubulin binding | 2.14E-03 |
| 59 | GO:0004033: aldo-keto reductase (NADP) activity | 2.91E-03 |
| 60 | GO:0008135: translation factor activity, RNA binding | 3.33E-03 |
| 61 | GO:0005375: copper ion transmembrane transporter activity | 3.33E-03 |
| 62 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.33E-03 |
| 63 | GO:0050661: NADP binding | 3.93E-03 |
| 64 | GO:0016844: strictosidine synthase activity | 4.22E-03 |
| 65 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.81E-03 |
| 66 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.19E-03 |
| 67 | GO:0051287: NAD binding | 5.38E-03 |
| 68 | GO:0016491: oxidoreductase activity | 5.61E-03 |
| 69 | GO:0015198: oligopeptide transporter activity | 5.69E-03 |
| 70 | GO:0000049: tRNA binding | 5.69E-03 |
| 71 | GO:0004089: carbonate dehydratase activity | 6.22E-03 |
| 72 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.22E-03 |
| 73 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.76E-03 |
| 74 | GO:0005345: purine nucleobase transmembrane transporter activity | 9.09E-03 |
| 75 | GO:0004519: endonuclease activity | 1.01E-02 |
| 76 | GO:0019843: rRNA binding | 1.07E-02 |
| 77 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.10E-02 |
| 78 | GO:0003727: single-stranded RNA binding | 1.17E-02 |
| 79 | GO:0008514: organic anion transmembrane transporter activity | 1.17E-02 |
| 80 | GO:0004499: N,N-dimethylaniline monooxygenase activity | 1.17E-02 |
| 81 | GO:0008565: protein transporter activity | 1.28E-02 |
| 82 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 83 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.38E-02 |
| 84 | GO:0016853: isomerase activity | 1.45E-02 |
| 85 | GO:0004872: receptor activity | 1.52E-02 |
| 86 | GO:0048038: quinone binding | 1.60E-02 |
| 87 | GO:0005200: structural constituent of cytoskeleton | 1.91E-02 |
| 88 | GO:0003723: RNA binding | 1.95E-02 |
| 89 | GO:0016597: amino acid binding | 1.99E-02 |
| 90 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.42E-02 |
| 91 | GO:0050660: flavin adenine dinucleotide binding | 2.65E-02 |
| 92 | GO:0050897: cobalt ion binding | 2.78E-02 |
| 93 | GO:0004497: monooxygenase activity | 2.84E-02 |
| 94 | GO:0003746: translation elongation factor activity | 2.97E-02 |
| 95 | GO:0003993: acid phosphatase activity | 3.06E-02 |
| 96 | GO:0043621: protein self-association | 3.76E-02 |
| 97 | GO:0005198: structural molecule activity | 3.86E-02 |
| 98 | GO:0009055: electron carrier activity | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.13E-36 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 8.84E-25 |
| 4 | GO:0009570: chloroplast stroma | 1.28E-12 |
| 5 | GO:0009941: chloroplast envelope | 6.94E-12 |
| 6 | GO:0009534: chloroplast thylakoid | 1.22E-11 |
| 7 | GO:0009579: thylakoid | 3.22E-09 |
| 8 | GO:0009523: photosystem II | 3.89E-06 |
| 9 | GO:0010287: plastoglobule | 1.77E-05 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 3.38E-05 |
| 11 | GO:0009538: photosystem I reaction center | 1.20E-04 |
| 12 | GO:0009706: chloroplast inner membrane | 1.55E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.84E-04 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 2.27E-04 |
| 15 | GO:0008274: gamma-tubulin ring complex | 3.69E-04 |
| 16 | GO:0030095: chloroplast photosystem II | 4.47E-04 |
| 17 | GO:0031977: thylakoid lumen | 4.88E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 6.04E-04 |
| 19 | GO:0033281: TAT protein transport complex | 6.04E-04 |
| 20 | GO:0042651: thylakoid membrane | 6.78E-04 |
| 21 | GO:0000923: equatorial microtubule organizing center | 8.63E-04 |
| 22 | GO:0042646: plastid nucleoid | 8.63E-04 |
| 23 | GO:0030286: dynein complex | 1.14E-03 |
| 24 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 1.14E-03 |
| 25 | GO:0009517: PSII associated light-harvesting complex II | 1.14E-03 |
| 26 | GO:0009522: photosystem I | 1.28E-03 |
| 27 | GO:0019898: extrinsic component of membrane | 1.37E-03 |
| 28 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.78E-03 |
| 29 | GO:0009295: nucleoid | 1.88E-03 |
| 30 | GO:0016020: membrane | 2.75E-03 |
| 31 | GO:0009539: photosystem II reaction center | 3.33E-03 |
| 32 | GO:0042644: chloroplast nucleoid | 3.77E-03 |
| 33 | GO:0000922: spindle pole | 3.77E-03 |
| 34 | GO:0031969: chloroplast membrane | 5.53E-03 |
| 35 | GO:0005938: cell cortex | 6.22E-03 |
| 36 | GO:0009508: plastid chromosome | 6.22E-03 |
| 37 | GO:0030076: light-harvesting complex | 7.32E-03 |
| 38 | GO:0015629: actin cytoskeleton | 1.10E-02 |
| 39 | GO:0009536: plastid | 1.76E-02 |
| 40 | GO:0005778: peroxisomal membrane | 1.91E-02 |
| 41 | GO:0010319: stromule | 1.91E-02 |
| 42 | GO:0046658: anchored component of plasma membrane | 1.96E-02 |
| 43 | GO:0015934: large ribosomal subunit | 2.78E-02 |
| 44 | GO:0048046: apoplast | 3.20E-02 |
| 45 | GO:0043231: intracellular membrane-bounded organelle | 4.60E-02 |