co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G22340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0010196: nonphotochemical quenching	6.93E-08
7	GO:0010027: thylakoid membrane organization	3.49E-07
8	GO:0090391: granum assembly	6.25E-07
9	GO:0032544: plastid translation	2.60E-05
10	GO:0043007: maintenance of rDNA	5.18E-05
11	GO:0006438: valyl-tRNA aminoacylation	5.18E-05
12	GO:0042254: ribosome biogenesis	5.87E-05
13	GO:0015979: photosynthesis	1.07E-04
14	GO:0006729: tetrahydrobiopterin biosynthetic process	1.27E-04
15	GO:0006418: tRNA aminoacylation for protein translation	1.45E-04
16	GO:0009793: embryo development ending in seed dormancy	1.99E-04
17	GO:0071492: cellular response to UV-A	2.17E-04
18	GO:0006412: translation	2.55E-04
19	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.17E-04
20	GO:0006546: glycine catabolic process	4.24E-04
21	GO:0071486: cellular response to high light intensity	4.24E-04
22	GO:0006109: regulation of carbohydrate metabolic process	4.24E-04
23	GO:0045727: positive regulation of translation	4.24E-04
24	GO:0015994: chlorophyll metabolic process	4.24E-04
25	GO:0032543: mitochondrial translation	5.39E-04
26	GO:0010236: plastoquinone biosynthetic process	5.39E-04
27	GO:0015995: chlorophyll biosynthetic process	5.66E-04
28	GO:0009658: chloroplast organization	6.13E-04
29	GO:0018298: protein-chromophore linkage	6.24E-04
30	GO:0010189: vitamin E biosynthetic process	7.87E-04
31	GO:0009642: response to light intensity	1.06E-03
32	GO:0017004: cytochrome complex assembly	1.20E-03
33	GO:0006364: rRNA processing	1.32E-03
34	GO:0010206: photosystem II repair	1.35E-03
35	GO:0010205: photoinhibition	1.50E-03
36	GO:0009073: aromatic amino acid family biosynthetic process	1.84E-03
37	GO:0043085: positive regulation of catalytic activity	1.84E-03
38	GO:0000272: polysaccharide catabolic process	1.84E-03
39	GO:0018119: peptidyl-cysteine S-nitrosylation	1.84E-03
40	GO:0009773: photosynthetic electron transport in photosystem I	1.84E-03
41	GO:0005983: starch catabolic process	2.01E-03
42	GO:0009735: response to cytokinin	2.37E-03
43	GO:0010207: photosystem II assembly	2.38E-03
44	GO:0006636: unsaturated fatty acid biosynthetic process	2.76E-03
45	GO:0009768: photosynthesis, light harvesting in photosystem I	3.16E-03
46	GO:0061077: chaperone-mediated protein folding	3.37E-03
47	GO:0009561: megagametogenesis	4.03E-03
48	GO:0016117: carotenoid biosynthetic process	4.26E-03
49	GO:0042631: cellular response to water deprivation	4.49E-03
50	GO:0006662: glycerol ether metabolic process	4.72E-03
51	GO:0045454: cell redox homeostasis	7.27E-03
52	GO:0006281: DNA repair	8.97E-03
53	GO:0010218: response to far red light	9.06E-03
54	GO:0009637: response to blue light	9.99E-03
55	GO:0034599: cellular response to oxidative stress	1.03E-02
56	GO:0030001: metal ion transport	1.09E-02
57	GO:0010114: response to red light	1.19E-02
58	GO:0009644: response to high light intensity	1.26E-02
59	GO:0009611: response to wounding	1.63E-02
60	GO:0043086: negative regulation of catalytic activity	1.66E-02
61	GO:0045893: positive regulation of transcription, DNA-templated	1.83E-02
62	GO:0009790: embryo development	2.48E-02
63	GO:0006633: fatty acid biosynthetic process	2.61E-02
64	GO:0007623: circadian rhythm	2.79E-02
65	GO:0006470: protein dephosphorylation	3.07E-02
66	GO:0010468: regulation of gene expression	3.17E-02
67	GO:0006979: response to oxidative stress	3.26E-02
68	GO:0080167: response to karrikin	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
3	GO:0004823: leucine-tRNA ligase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0019843: rRNA binding	1.58E-10
8	GO:0003735: structural constituent of ribosome	1.83E-05
9	GO:0045485: omega-6 fatty acid desaturase activity	5.18E-05
10	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	5.18E-05
11	GO:0019203: carbohydrate phosphatase activity	5.18E-05
12	GO:0004832: valine-tRNA ligase activity	5.18E-05
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	5.18E-05
14	GO:0050308: sugar-phosphatase activity	5.18E-05
15	GO:0031072: heat shock protein binding	7.84E-05
16	GO:0047746: chlorophyllase activity	1.27E-04
17	GO:0010297: heteropolysaccharide binding	1.27E-04
18	GO:0004047: aminomethyltransferase activity	1.27E-04
19	GO:0005528: FK506 binding	1.30E-04
20	GO:0003913: DNA photolyase activity	2.17E-04
21	GO:0002161: aminoacyl-tRNA editing activity	2.17E-04
22	GO:0004812: aminoacyl-tRNA ligase activity	2.31E-04
23	GO:0016168: chlorophyll binding	5.10E-04
24	GO:2001070: starch binding	6.60E-04
25	GO:0009881: photoreceptor activity	9.18E-04
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.15E-03
27	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.35E-03
28	GO:0008047: enzyme activator activity	1.67E-03
29	GO:0051082: unfolded protein binding	1.86E-03
30	GO:0031409: pigment binding	2.76E-03
31	GO:0004857: enzyme inhibitor activity	2.96E-03
32	GO:0022891: substrate-specific transmembrane transporter activity	3.80E-03
33	GO:0016787: hydrolase activity	3.90E-03
34	GO:0003756: protein disulfide isomerase activity	4.03E-03
35	GO:0047134: protein-disulfide reductase activity	4.26E-03
36	GO:0000287: magnesium ion binding	4.82E-03
37	GO:0050662: coenzyme binding	4.96E-03
38	GO:0004791: thioredoxin-disulfide reductase activity	4.96E-03
39	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.97E-03
40	GO:0008483: transaminase activity	6.49E-03
41	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	8.17E-03
42	GO:0016491: oxidoreductase activity	9.20E-03
43	GO:0003746: translation elongation factor activity	9.99E-03
44	GO:0015035: protein disulfide oxidoreductase activity	1.93E-02
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.26E-02
46	GO:0042802: identical protein binding	3.31E-02
47	GO:0008168: methyltransferase activity	3.71E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	3.86E-02
49	GO:0004497: monooxygenase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009507: chloroplast	1.78E-37
4	GO:0009535: chloroplast thylakoid membrane	3.12E-21
5	GO:0009534: chloroplast thylakoid	1.97E-19
6	GO:0009570: chloroplast stroma	2.15E-18
7	GO:0009941: chloroplast envelope	2.55E-18
8	GO:0009579: thylakoid	5.84E-10
9	GO:0005840: ribosome	7.47E-09
10	GO:0009543: chloroplast thylakoid lumen	1.27E-05
11	GO:0031977: thylakoid lumen	5.75E-05
12	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.27E-04
13	GO:0009706: chloroplast inner membrane	1.68E-04
14	GO:0010287: plastoglobule	2.13E-04
15	GO:0015934: large ribosomal subunit	7.17E-04
16	GO:0031969: chloroplast membrane	8.01E-04
17	GO:0009538: photosystem I reaction center	1.06E-03
18	GO:0009508: plastid chromosome	2.19E-03
19	GO:0030076: light-harvesting complex	2.56E-03
20	GO:0042651: thylakoid membrane	3.16E-03
21	GO:0009522: photosystem I	4.96E-03
22	GO:0009523: photosystem II	5.21E-03
23	GO:0010319: stromule	6.49E-03
24	GO:0009295: nucleoid	6.49E-03
25	GO:0022626: cytosolic ribosome	1.53E-02
26	GO:0016020: membrane	1.64E-02
27	GO:0005623: cell	2.26E-02
28	GO:0048046: apoplast	3.31E-02