GO Enrichment Analysis of Co-expressed Genes with
AT5G22100
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:0097250: mitochondrial respiratory chain supercomplex assembly | 0.00E+00 |
| 7 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 1.92E-15 |
| 9 | GO:0009561: megagametogenesis | 2.12E-05 |
| 10 | GO:0042254: ribosome biogenesis | 2.66E-05 |
| 11 | GO:0010501: RNA secondary structure unwinding | 2.76E-05 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.24E-05 |
| 13 | GO:0009553: embryo sac development | 4.39E-05 |
| 14 | GO:0000028: ribosomal small subunit assembly | 5.73E-05 |
| 15 | GO:0006407: rRNA export from nucleus | 1.00E-04 |
| 16 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.00E-04 |
| 17 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.00E-04 |
| 18 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.00E-04 |
| 19 | GO:1902182: shoot apical meristem development | 1.00E-04 |
| 20 | GO:2000232: regulation of rRNA processing | 1.00E-04 |
| 21 | GO:0043985: histone H4-R3 methylation | 1.00E-04 |
| 22 | GO:0030187: melatonin biosynthetic process | 2.36E-04 |
| 23 | GO:0080009: mRNA methylation | 2.36E-04 |
| 24 | GO:0034470: ncRNA processing | 2.36E-04 |
| 25 | GO:0045604: regulation of epidermal cell differentiation | 3.92E-04 |
| 26 | GO:0007276: gamete generation | 5.64E-04 |
| 27 | GO:0006412: translation | 5.85E-04 |
| 28 | GO:0000460: maturation of 5.8S rRNA | 7.50E-04 |
| 29 | GO:0080037: negative regulation of cytokinin-activated signaling pathway | 7.50E-04 |
| 30 | GO:0006479: protein methylation | 7.50E-04 |
| 31 | GO:0046345: abscisic acid catabolic process | 7.50E-04 |
| 32 | GO:0042274: ribosomal small subunit biogenesis | 7.50E-04 |
| 33 | GO:0042273: ribosomal large subunit biogenesis | 7.50E-04 |
| 34 | GO:2000762: regulation of phenylpropanoid metabolic process | 9.47E-04 |
| 35 | GO:0000380: alternative mRNA splicing, via spliceosome | 9.47E-04 |
| 36 | GO:0010375: stomatal complex patterning | 9.47E-04 |
| 37 | GO:0000470: maturation of LSU-rRNA | 1.16E-03 |
| 38 | GO:0048444: floral organ morphogenesis | 1.38E-03 |
| 39 | GO:0010077: maintenance of inflorescence meristem identity | 1.38E-03 |
| 40 | GO:0009423: chorismate biosynthetic process | 1.38E-03 |
| 41 | GO:0010374: stomatal complex development | 1.62E-03 |
| 42 | GO:0045995: regulation of embryonic development | 1.62E-03 |
| 43 | GO:0030162: regulation of proteolysis | 1.87E-03 |
| 44 | GO:0042255: ribosome assembly | 1.87E-03 |
| 45 | GO:2000024: regulation of leaf development | 2.41E-03 |
| 46 | GO:0000387: spliceosomal snRNP assembly | 2.70E-03 |
| 47 | GO:0051555: flavonol biosynthetic process | 3.00E-03 |
| 48 | GO:0009073: aromatic amino acid family biosynthetic process | 3.31E-03 |
| 49 | GO:0010582: floral meristem determinacy | 3.63E-03 |
| 50 | GO:0032259: methylation | 3.71E-03 |
| 51 | GO:0010030: positive regulation of seed germination | 4.64E-03 |
| 52 | GO:0006406: mRNA export from nucleus | 5.37E-03 |
| 53 | GO:0000027: ribosomal large subunit assembly | 5.37E-03 |
| 54 | GO:0051302: regulation of cell division | 5.75E-03 |
| 55 | GO:0007005: mitochondrion organization | 6.54E-03 |
| 56 | GO:0070417: cellular response to cold | 7.78E-03 |
| 57 | GO:0006342: chromatin silencing | 8.65E-03 |
| 58 | GO:0051301: cell division | 9.06E-03 |
| 59 | GO:0048825: cotyledon development | 9.56E-03 |
| 60 | GO:0006974: cellular response to DNA damage stimulus | 1.40E-02 |
| 61 | GO:0016049: cell growth | 1.51E-02 |
| 62 | GO:0009793: embryo development ending in seed dormancy | 1.68E-02 |
| 63 | GO:0048527: lateral root development | 1.74E-02 |
| 64 | GO:0045892: negative regulation of transcription, DNA-templated | 1.78E-02 |
| 65 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.55E-02 |
| 66 | GO:0009809: lignin biosynthetic process | 2.75E-02 |
| 67 | GO:0009909: regulation of flower development | 2.95E-02 |
| 68 | GO:0006417: regulation of translation | 2.95E-02 |
| 69 | GO:0016569: covalent chromatin modification | 3.38E-02 |
| 70 | GO:0000398: mRNA splicing, via spliceosome | 3.91E-02 |
| 71 | GO:0009790: embryo development | 4.62E-02 |
| 72 | GO:0006457: protein folding | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030744: luteolin O-methyltransferase activity | 0.00E+00 |
| 2 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 3 | GO:0033799: myricetin 3'-O-methyltransferase activity | 0.00E+00 |
| 4 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 5 | GO:0047763: caffeate O-methyltransferase activity | 0.00E+00 |
| 6 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 7 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 8 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 9 | GO:0030755: quercetin 3-O-methyltransferase activity | 0.00E+00 |
| 10 | GO:0000166: nucleotide binding | 1.38E-12 |
| 11 | GO:0003723: RNA binding | 1.30E-08 |
| 12 | GO:0043021: ribonucleoprotein complex binding | 5.31E-07 |
| 13 | GO:0004004: ATP-dependent RNA helicase activity | 3.55E-06 |
| 14 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.33E-05 |
| 15 | GO:0003735: structural constituent of ribosome | 3.98E-05 |
| 16 | GO:0030515: snoRNA binding | 4.38E-05 |
| 17 | GO:0017096: acetylserotonin O-methyltransferase activity | 1.00E-04 |
| 18 | GO:0042134: rRNA primary transcript binding | 1.00E-04 |
| 19 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.00E-04 |
| 20 | GO:0001054: RNA polymerase I activity | 1.52E-04 |
| 21 | GO:0070181: small ribosomal subunit rRNA binding | 3.92E-04 |
| 22 | GO:0008026: ATP-dependent helicase activity | 5.78E-04 |
| 23 | GO:0008168: methyltransferase activity | 1.74E-03 |
| 24 | GO:0001055: RNA polymerase II activity | 2.70E-03 |
| 25 | GO:0001056: RNA polymerase III activity | 3.63E-03 |
| 26 | GO:0003725: double-stranded RNA binding | 3.95E-03 |
| 27 | GO:0004407: histone deacetylase activity | 5.37E-03 |
| 28 | GO:0043130: ubiquitin binding | 5.37E-03 |
| 29 | GO:0019843: rRNA binding | 5.52E-03 |
| 30 | GO:0004527: exonuclease activity | 8.65E-03 |
| 31 | GO:0003713: transcription coactivator activity | 8.65E-03 |
| 32 | GO:0010181: FMN binding | 9.10E-03 |
| 33 | GO:0003676: nucleic acid binding | 1.27E-02 |
| 34 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.51E-02 |
| 35 | GO:0003746: translation elongation factor activity | 1.86E-02 |
| 36 | GO:0003697: single-stranded DNA binding | 1.86E-02 |
| 37 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.91E-02 |
| 38 | GO:0042393: histone binding | 2.03E-02 |
| 39 | GO:0005515: protein binding | 2.64E-02 |
| 40 | GO:0003690: double-stranded DNA binding | 2.81E-02 |
| 41 | GO:0046983: protein dimerization activity | 2.85E-02 |
| 42 | GO:0031625: ubiquitin protein ligase binding | 2.95E-02 |
| 43 | GO:0003729: mRNA binding | 3.26E-02 |
| 44 | GO:0016887: ATPase activity | 3.36E-02 |
| 45 | GO:0051082: unfolded protein binding | 3.53E-02 |
| 46 | GO:0015035: protein disulfide oxidoreductase activity | 3.61E-02 |
| 47 | GO:0004386: helicase activity | 3.76E-02 |
| 48 | GO:0016740: transferase activity | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0070545: PeBoW complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 1.08E-33 |
| 6 | GO:0005634: nucleus | 2.43E-10 |
| 7 | GO:0030687: preribosome, large subunit precursor | 1.36E-09 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.45E-09 |
| 9 | GO:0032040: small-subunit processome | 3.15E-08 |
| 10 | GO:0005834: heterotrimeric G-protein complex | 3.68E-05 |
| 11 | GO:0005736: DNA-directed RNA polymerase I complex | 8.98E-05 |
| 12 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.00E-04 |
| 13 | GO:0030686: 90S preribosome | 1.00E-04 |
| 14 | GO:0022627: cytosolic small ribosomal subunit | 2.06E-04 |
| 15 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 3.92E-04 |
| 16 | GO:0030132: clathrin coat of coated pit | 3.92E-04 |
| 17 | GO:0015935: small ribosomal subunit | 3.94E-04 |
| 18 | GO:0022625: cytosolic large ribosomal subunit | 4.08E-04 |
| 19 | GO:0005654: nucleoplasm | 6.89E-04 |
| 20 | GO:0016363: nuclear matrix | 1.38E-03 |
| 21 | GO:0019005: SCF ubiquitin ligase complex | 1.44E-03 |
| 22 | GO:0022626: cytosolic ribosome | 1.51E-03 |
| 23 | GO:0015934: large ribosomal subunit | 1.65E-03 |
| 24 | GO:0034399: nuclear periphery | 1.87E-03 |
| 25 | GO:0005763: mitochondrial small ribosomal subunit | 2.41E-03 |
| 26 | GO:0005666: DNA-directed RNA polymerase III complex | 2.70E-03 |
| 27 | GO:0015030: Cajal body | 2.70E-03 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.00E-03 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.63E-03 |
| 30 | GO:0019013: viral nucleocapsid | 3.95E-03 |
| 31 | GO:0000419: DNA-directed RNA polymerase V complex | 5.00E-03 |
| 32 | GO:0005840: ribosome | 5.08E-03 |
| 33 | GO:0005759: mitochondrial matrix | 6.93E-03 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 1.30E-02 |
| 35 | GO:0009506: plasmodesma | 1.44E-02 |
| 36 | GO:0005829: cytosol | 1.76E-02 |
| 37 | GO:0005681: spliceosomal complex | 3.09E-02 |
| 38 | GO:0005747: mitochondrial respiratory chain complex I | 3.17E-02 |
| 39 | GO:0016607: nuclear speck | 3.17E-02 |
| 40 | GO:0005618: cell wall | 3.71E-02 |
| 41 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.76E-02 |