co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G21222

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0097164: ammonium ion metabolic process	0.00E+00
8	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
9	GO:0015739: sialic acid transport	0.00E+00
10	GO:0019685: photosynthesis, dark reaction	0.00E+00
11	GO:0010343: singlet oxygen-mediated programmed cell death	0.00E+00
12	GO:0080005: photosystem stoichiometry adjustment	3.96E-06
13	GO:0090307: mitotic spindle assembly	3.17E-05
14	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	3.17E-05
15	GO:2001141: regulation of RNA biosynthetic process	3.17E-05
16	GO:0009902: chloroplast relocation	5.68E-05
17	GO:0000304: response to singlet oxygen	8.98E-05
18	GO:0010117: photoprotection	8.98E-05
19	GO:0046283: anthocyanin-containing compound metabolic process	8.98E-05
20	GO:0009658: chloroplast organization	9.87E-05
21	GO:0010362: negative regulation of anion channel activity by blue light	2.94E-04
22	GO:0015969: guanosine tetraphosphate metabolic process	2.94E-04
23	GO:0034972: histone H3-R26 methylation	2.94E-04
24	GO:0051418: microtubule nucleation by microtubule organizing center	2.94E-04
25	GO:1902265: abscisic acid homeostasis	2.94E-04
26	GO:0034971: histone H3-R17 methylation	2.94E-04
27	GO:0072387: flavin adenine dinucleotide metabolic process	2.94E-04
28	GO:0042371: vitamin K biosynthetic process	2.94E-04
29	GO:0071454: cellular response to anoxia	2.94E-04
30	GO:0071461: cellular response to redox state	2.94E-04
31	GO:0034080: CENP-A containing nucleosome assembly	2.94E-04
32	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.94E-04
33	GO:0048564: photosystem I assembly	2.94E-04
34	GO:0034970: histone H3-R2 methylation	2.94E-04
35	GO:0071482: cellular response to light stimulus	3.62E-04
36	GO:0015780: nucleotide-sugar transport	4.36E-04
37	GO:0009638: phototropism	5.16E-04
38	GO:0045036: protein targeting to chloroplast	6.02E-04
39	GO:1901529: positive regulation of anion channel activity	6.45E-04
40	GO:0033566: gamma-tubulin complex localization	6.45E-04
41	GO:0060359: response to ammonium ion	6.45E-04
42	GO:0048255: mRNA stabilization	6.45E-04
43	GO:0010617: circadian regulation of calcium ion oscillation	6.45E-04
44	GO:0070981: L-asparagine biosynthetic process	6.45E-04
45	GO:0007154: cell communication	6.45E-04
46	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.45E-04
47	GO:0099402: plant organ development	6.45E-04
48	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	6.45E-04
49	GO:0006529: asparagine biosynthetic process	6.45E-04
50	GO:0016122: xanthophyll metabolic process	6.45E-04
51	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	6.45E-04
52	GO:0080153: negative regulation of reductive pentose-phosphate cycle	6.45E-04
53	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.45E-04
54	GO:0006352: DNA-templated transcription, initiation	6.94E-04
55	GO:0009767: photosynthetic electron transport chain	8.98E-04
56	GO:0010207: photosystem II assembly	1.01E-03
57	GO:1902448: positive regulation of shade avoidance	1.04E-03
58	GO:0006013: mannose metabolic process	1.04E-03
59	GO:1901672: positive regulation of systemic acquired resistance	1.04E-03
60	GO:0009150: purine ribonucleotide metabolic process	1.04E-03
61	GO:0006696: ergosterol biosynthetic process	1.04E-03
62	GO:0071836: nectar secretion	1.04E-03
63	GO:0044375: regulation of peroxisome size	1.04E-03
64	GO:0043157: response to cation stress	1.04E-03
65	GO:0007052: mitotic spindle organization	1.04E-03
66	GO:0045910: negative regulation of DNA recombination	1.04E-03
67	GO:0031022: nuclear migration along microfilament	1.04E-03
68	GO:0009637: response to blue light	1.13E-03
69	GO:0007623: circadian rhythm	1.39E-03
70	GO:0009647: skotomorphogenesis	1.50E-03
71	GO:0033014: tetrapyrrole biosynthetic process	1.50E-03
72	GO:0009113: purine nucleobase biosynthetic process	1.50E-03
73	GO:1901332: negative regulation of lateral root development	1.50E-03
74	GO:0009963: positive regulation of flavonoid biosynthetic process	1.50E-03
75	GO:0034508: centromere complex assembly	1.50E-03
76	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.50E-03
77	GO:0010371: regulation of gibberellin biosynthetic process	1.50E-03
78	GO:0009640: photomorphogenesis	1.56E-03
79	GO:0016226: iron-sulfur cluster assembly	1.83E-03
80	GO:0031122: cytoplasmic microtubule organization	2.01E-03
81	GO:0006552: leucine catabolic process	2.01E-03
82	GO:0009649: entrainment of circadian clock	2.01E-03
83	GO:1902347: response to strigolactone	2.01E-03
84	GO:0034613: cellular protein localization	2.01E-03
85	GO:0016117: carotenoid biosynthetic process	2.35E-03
86	GO:0010118: stomatal movement	2.54E-03
87	GO:0016120: carotene biosynthetic process	2.56E-03
88	GO:0009646: response to absence of light	2.94E-03
89	GO:0060918: auxin transport	3.16E-03
90	GO:0010190: cytochrome b6f complex assembly	3.16E-03
91	GO:1901371: regulation of leaf morphogenesis	3.16E-03
92	GO:0000741: karyogamy	3.16E-03
93	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.16E-03
94	GO:0009959: negative gravitropism	3.16E-03
95	GO:0006555: methionine metabolic process	3.16E-03
96	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.81E-03
97	GO:0034389: lipid particle organization	3.81E-03
98	GO:0009903: chloroplast avoidance movement	3.81E-03
99	GO:0010019: chloroplast-nucleus signaling pathway	3.81E-03
100	GO:0010310: regulation of hydrogen peroxide metabolic process	3.81E-03
101	GO:0019509: L-methionine salvage from methylthioadenosine	3.81E-03
102	GO:0046777: protein autophosphorylation	4.17E-03
103	GO:0009396: folic acid-containing compound biosynthetic process	4.49E-03
104	GO:0051510: regulation of unidimensional cell growth	4.49E-03
105	GO:1900056: negative regulation of leaf senescence	4.49E-03
106	GO:0016126: sterol biosynthetic process	4.88E-03
107	GO:0010928: regulation of auxin mediated signaling pathway	5.21E-03
108	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.21E-03
109	GO:0009704: de-etiolation	5.21E-03
110	GO:0009231: riboflavin biosynthetic process	5.21E-03
111	GO:0006102: isocitrate metabolic process	5.21E-03
112	GO:0016559: peroxisome fission	5.21E-03
113	GO:0019430: removal of superoxide radicals	5.98E-03
114	GO:0022900: electron transport chain	5.98E-03
115	GO:0018298: protein-chromophore linkage	6.37E-03
116	GO:0000160: phosphorelay signal transduction system	6.69E-03
117	GO:0009821: alkaloid biosynthetic process	6.77E-03
118	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.77E-03
119	GO:0019432: triglyceride biosynthetic process	6.77E-03
120	GO:0046916: cellular transition metal ion homeostasis	6.77E-03
121	GO:0006783: heme biosynthetic process	6.77E-03
122	GO:0006811: ion transport	7.03E-03
123	GO:0010228: vegetative to reproductive phase transition of meristem	7.58E-03
124	GO:0035999: tetrahydrofolate interconversion	7.60E-03
125	GO:0010380: regulation of chlorophyll biosynthetic process	7.60E-03
126	GO:0008356: asymmetric cell division	7.60E-03
127	GO:1900426: positive regulation of defense response to bacterium	7.60E-03
128	GO:0006779: porphyrin-containing compound biosynthetic process	7.60E-03
129	GO:0051555: flavonol biosynthetic process	8.48E-03
130	GO:0006535: cysteine biosynthetic process from serine	8.48E-03
131	GO:0000103: sulfate assimilation	8.48E-03
132	GO:0009688: abscisic acid biosynthetic process	8.48E-03
133	GO:0009641: shade avoidance	8.48E-03
134	GO:0006298: mismatch repair	8.48E-03
135	GO:0043085: positive regulation of catalytic activity	9.38E-03
136	GO:0008285: negative regulation of cell proliferation	9.38E-03
137	GO:0045037: protein import into chloroplast stroma	1.03E-02
138	GO:0006790: sulfur compound metabolic process	1.03E-02
139	GO:0009744: response to sucrose	1.04E-02
140	GO:0030048: actin filament-based movement	1.13E-02
141	GO:0008643: carbohydrate transport	1.13E-02
142	GO:0009785: blue light signaling pathway	1.13E-02
143	GO:0050826: response to freezing	1.13E-02
144	GO:0010075: regulation of meristem growth	1.13E-02
145	GO:0009725: response to hormone	1.13E-02
146	GO:0005986: sucrose biosynthetic process	1.13E-02
147	GO:0034605: cellular response to heat	1.23E-02
148	GO:0006541: glutamine metabolic process	1.23E-02
149	GO:0019253: reductive pentose-phosphate cycle	1.23E-02
150	GO:0007031: peroxisome organization	1.33E-02
151	GO:0006071: glycerol metabolic process	1.44E-02
152	GO:2000377: regulation of reactive oxygen species metabolic process	1.55E-02
153	GO:0019344: cysteine biosynthetic process	1.55E-02
154	GO:0009416: response to light stimulus	1.62E-02
155	GO:0007017: microtubule-based process	1.66E-02
156	GO:0010073: meristem maintenance	1.66E-02
157	GO:0080092: regulation of pollen tube growth	1.90E-02
158	GO:0009693: ethylene biosynthetic process	2.02E-02
159	GO:0010227: floral organ abscission	2.02E-02
160	GO:0070417: cellular response to cold	2.27E-02
161	GO:0000226: microtubule cytoskeleton organization	2.40E-02
162	GO:0010051: xylem and phloem pattern formation	2.40E-02
163	GO:0010087: phloem or xylem histogenesis	2.40E-02
164	GO:0009958: positive gravitropism	2.53E-02
165	GO:0006520: cellular amino acid metabolic process	2.53E-02
166	GO:0010197: polar nucleus fusion	2.53E-02
167	GO:0010182: sugar mediated signaling pathway	2.53E-02
168	GO:0009058: biosynthetic process	2.66E-02
169	GO:0042752: regulation of circadian rhythm	2.66E-02
170	GO:0009791: post-embryonic development	2.80E-02
171	GO:0006810: transport	2.96E-02
172	GO:0009630: gravitropism	3.08E-02
173	GO:0007264: small GTPase mediated signal transduction	3.08E-02
174	GO:0030163: protein catabolic process	3.22E-02
175	GO:1901657: glycosyl compound metabolic process	3.22E-02
176	GO:0055114: oxidation-reduction process	3.23E-02
177	GO:0009451: RNA modification	3.56E-02
178	GO:0010027: thylakoid membrane organization	3.82E-02
179	GO:0010029: regulation of seed germination	3.97E-02
180	GO:0009816: defense response to bacterium, incompatible interaction	3.97E-02
181	GO:0006508: proteolysis	4.16E-02
182	GO:0015995: chlorophyll biosynthetic process	4.29E-02
183	GO:0048573: photoperiodism, flowering	4.29E-02
184	GO:0030244: cellulose biosynthetic process	4.61E-02
185	GO:0009407: toxin catabolic process	4.94E-02
186	GO:0010218: response to far red light	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0015136: sialic acid transmembrane transporter activity	0.00E+00
4	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
9	GO:0045436: lycopene beta cyclase activity	0.00E+00
10	GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity	0.00E+00
11	GO:0004848: ureidoglycolate hydrolase activity	1.41E-05
12	GO:0048038: quinone binding	2.63E-05
13	GO:0009882: blue light photoreceptor activity	3.17E-05
14	GO:0000254: C-4 methylsterol oxidase activity	3.17E-05
15	GO:0016987: sigma factor activity	5.68E-05
16	GO:0043015: gamma-tubulin binding	5.68E-05
17	GO:0001053: plastid sigma factor activity	5.68E-05
18	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.33E-04
19	GO:0016783: sulfurtransferase activity	2.94E-04
20	GO:0004071: aspartate-ammonia ligase activity	2.94E-04
21	GO:0004325: ferrochelatase activity	2.94E-04
22	GO:0051996: squalene synthase activity	2.94E-04
23	GO:0004328: formamidase activity	2.94E-04
24	GO:0030941: chloroplast targeting sequence binding	2.94E-04
25	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.94E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.94E-04
27	GO:0004485: methylcrotonoyl-CoA carboxylase activity	2.94E-04
28	GO:0046480: galactolipid galactosyltransferase activity	2.94E-04
29	GO:0046906: tetrapyrrole binding	2.94E-04
30	GO:0080079: cellobiose glucosidase activity	2.94E-04
31	GO:0071949: FAD binding	4.36E-04
32	GO:0004329: formate-tetrahydrofolate ligase activity	6.45E-04
33	GO:0004046: aminoacylase activity	6.45E-04
34	GO:0004450: isocitrate dehydrogenase (NADP+) activity	6.45E-04
35	GO:0035241: protein-arginine omega-N monomethyltransferase activity	6.45E-04
36	GO:0008728: GTP diphosphokinase activity	6.45E-04
37	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.45E-04
38	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	6.45E-04
39	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	6.45E-04
40	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	6.45E-04
41	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.45E-04
42	GO:0004047: aminomethyltransferase activity	6.45E-04
43	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	6.45E-04
44	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.45E-04
45	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	6.45E-04
46	GO:0004222: metalloendopeptidase activity	9.53E-04
47	GO:0032947: protein complex scaffold	1.04E-03
48	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.04E-03
49	GO:0019003: GDP binding	1.04E-03
50	GO:0004075: biotin carboxylase activity	1.04E-03
51	GO:0003935: GTP cyclohydrolase II activity	1.04E-03
52	GO:0008469: histone-arginine N-methyltransferase activity	1.04E-03
53	GO:0004180: carboxypeptidase activity	1.04E-03
54	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.04E-03
55	GO:0046524: sucrose-phosphate synthase activity	1.04E-03
56	GO:0004792: thiosulfate sulfurtransferase activity	1.50E-03
57	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.50E-03
58	GO:0016851: magnesium chelatase activity	1.50E-03
59	GO:0047627: adenylylsulfatase activity	1.50E-03
60	GO:0009001: serine O-acetyltransferase activity	1.50E-03
61	GO:0004176: ATP-dependent peptidase activity	1.68E-03
62	GO:0051861: glycolipid binding	2.01E-03
63	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.01E-03
64	GO:0042802: identical protein binding	2.01E-03
65	GO:0051011: microtubule minus-end binding	2.56E-03
66	GO:0016407: acetyltransferase activity	2.56E-03
67	GO:0016491: oxidoreductase activity	2.74E-03
68	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.16E-03
69	GO:0000293: ferric-chelate reductase activity	3.16E-03
70	GO:0004784: superoxide dismutase activity	3.16E-03
71	GO:0030983: mismatched DNA binding	3.16E-03
72	GO:0004709: MAP kinase kinase kinase activity	3.16E-03
73	GO:0004518: nuclease activity	3.61E-03
74	GO:0015631: tubulin binding	3.81E-03
75	GO:0004144: diacylglycerol O-acyltransferase activity	3.81E-03
76	GO:0004559: alpha-mannosidase activity	3.81E-03
77	GO:0016157: sucrose synthase activity	3.81E-03
78	GO:0008237: metallopeptidase activity	4.35E-03
79	GO:0016621: cinnamoyl-CoA reductase activity	4.49E-03
80	GO:0019899: enzyme binding	4.49E-03
81	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	5.21E-03
82	GO:0046914: transition metal ion binding	5.98E-03
83	GO:0016844: strictosidine synthase activity	7.60E-03
84	GO:0004713: protein tyrosine kinase activity	8.48E-03
85	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.38E-03
86	GO:0008378: galactosyltransferase activity	1.03E-02
87	GO:0031072: heat shock protein binding	1.13E-02
88	GO:0000155: phosphorelay sensor kinase activity	1.13E-02
89	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.23E-02
90	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.41E-02
91	GO:0003887: DNA-directed DNA polymerase activity	1.44E-02
92	GO:0051536: iron-sulfur cluster binding	1.55E-02
93	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.72E-02
94	GO:0022857: transmembrane transporter activity	1.89E-02
95	GO:0016740: transferase activity	2.18E-02
96	GO:0042803: protein homodimerization activity	2.18E-02
97	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.45E-02
98	GO:0008080: N-acetyltransferase activity	2.53E-02
99	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.59E-02
100	GO:0050662: coenzyme binding	2.66E-02
101	GO:0010181: FMN binding	2.66E-02
102	GO:0004872: receptor activity	2.80E-02
103	GO:0004519: endonuclease activity	2.97E-02
104	GO:0000156: phosphorelay response regulator activity	3.22E-02
105	GO:0003684: damaged DNA binding	3.37E-02
106	GO:0008483: transaminase activity	3.51E-02
107	GO:0005200: structural constituent of cytoskeleton	3.51E-02
108	GO:0030247: polysaccharide binding	4.29E-02
109	GO:0008236: serine-type peptidase activity	4.44E-02
110	GO:0005506: iron ion binding	4.47E-02
111	GO:0016887: ATPase activity	4.60E-02
112	GO:0005096: GTPase activator activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	7.61E-18
3	GO:0009535: chloroplast thylakoid membrane	1.10E-07
4	GO:0008274: gamma-tubulin ring complex	3.96E-06
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.51E-05
6	GO:0031969: chloroplast membrane	2.27E-05
7	GO:0000923: equatorial microtubule organizing center	3.17E-05
8	GO:0031359: integral component of chloroplast outer membrane	2.33E-04
9	GO:0000152: nuclear ubiquitin ligase complex	2.94E-04
10	GO:0031021: interphase microtubule organizing center	2.94E-04
11	GO:0016604: nuclear body	5.16E-04
12	GO:0009536: plastid	7.35E-04
13	GO:0016605: PML body	1.04E-03
14	GO:0005640: nuclear outer membrane	1.04E-03
15	GO:0042646: plastid nucleoid	1.50E-03
16	GO:0042651: thylakoid membrane	1.53E-03
17	GO:0005777: peroxisome	1.60E-03
18	GO:0009517: PSII associated light-harvesting complex II	2.01E-03
19	GO:0005828: kinetochore microtubule	2.01E-03
20	GO:0000930: gamma-tubulin complex	2.01E-03
21	GO:0030286: dynein complex	2.01E-03
22	GO:0072686: mitotic spindle	2.56E-03
23	GO:0000776: kinetochore	2.56E-03
24	GO:0055035: plastid thylakoid membrane	2.56E-03
25	GO:0030140: trans-Golgi network transport vesicle	3.16E-03
26	GO:0005623: cell	4.91E-03
27	GO:0005779: integral component of peroxisomal membrane	5.98E-03
28	GO:0005811: lipid particle	5.98E-03
29	GO:0046930: pore complex	5.98E-03
30	GO:0009707: chloroplast outer membrane	6.37E-03
31	GO:0000922: spindle pole	6.77E-03
32	GO:0042644: chloroplast nucleoid	6.77E-03
33	GO:0016324: apical plasma membrane	8.48E-03
34	GO:0009574: preprophase band	1.13E-02
35	GO:0043234: protein complex	1.44E-02
36	GO:0005875: microtubule associated complex	1.44E-02
37	GO:0009941: chloroplast envelope	1.73E-02
38	GO:0005773: vacuole	2.28E-02
39	GO:0009295: nucleoid	3.51E-02
40	GO:0005778: peroxisomal membrane	3.51E-02