co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G20600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0009095: aromatic amino acid family biosynthetic process, prephenate pathway	0.00E+00
3	GO:1900363: regulation of mRNA polyadenylation	0.00E+00
4	GO:0039694: viral RNA genome replication	0.00E+00
5	GO:0018063: cytochrome c-heme linkage	0.00E+00
6	GO:0006364: rRNA processing	5.70E-07
7	GO:0051131: chaperone-mediated protein complex assembly	3.91E-06
8	GO:0010501: RNA secondary structure unwinding	2.15E-05
9	GO:0006457: protein folding	5.43E-05
10	GO:0009408: response to heat	7.02E-05
11	GO:0006413: translational initiation	8.51E-05
12	GO:1902182: shoot apical meristem development	8.96E-05
13	GO:0051014: actin filament severing	8.96E-05
14	GO:0071277: cellular response to calcium ion	8.96E-05
15	GO:0099636: cytoplasmic streaming	8.96E-05
16	GO:0006446: regulation of translational initiation	1.97E-04
17	GO:0006611: protein export from nucleus	2.12E-04
18	GO:0031124: mRNA 3'-end processing	2.12E-04
19	GO:0019521: D-gluconate metabolic process	2.12E-04
20	GO:0010372: positive regulation of gibberellin biosynthetic process	2.12E-04
21	GO:1901684: arsenate ion transmembrane transport	2.12E-04
22	GO:0000055: ribosomal large subunit export from nucleus	3.54E-04
23	GO:0070475: rRNA base methylation	3.54E-04
24	GO:0045604: regulation of epidermal cell differentiation	3.54E-04
25	GO:0009553: embryo sac development	4.25E-04
26	GO:0009845: seed germination	6.48E-04
27	GO:0033320: UDP-D-xylose biosynthetic process	6.78E-04
28	GO:0051764: actin crosslink formation	6.78E-04
29	GO:0016973: poly(A)+ mRNA export from nucleus	8.59E-04
30	GO:0007029: endoplasmic reticulum organization	8.59E-04
31	GO:0034052: positive regulation of plant-type hypersensitive response	8.59E-04
32	GO:0009615: response to virus	9.61E-04
33	GO:0001731: formation of translation preinitiation complex	1.05E-03
34	GO:0016070: RNA metabolic process	1.05E-03
35	GO:0000470: maturation of LSU-rRNA	1.05E-03
36	GO:0042732: D-xylose metabolic process	1.05E-03
37	GO:0033365: protein localization to organelle	1.05E-03
38	GO:0048444: floral organ morphogenesis	1.25E-03
39	GO:0016444: somatic cell DNA recombination	1.25E-03
40	GO:0010077: maintenance of inflorescence meristem identity	1.25E-03
41	GO:0009094: L-phenylalanine biosynthetic process	1.25E-03
42	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.25E-03
43	GO:0045995: regulation of embryonic development	1.46E-03
44	GO:0051693: actin filament capping	1.46E-03
45	GO:0000028: ribosomal small subunit assembly	1.69E-03
46	GO:0050821: protein stabilization	1.69E-03
47	GO:0006402: mRNA catabolic process	1.69E-03
48	GO:0043068: positive regulation of programmed cell death	1.69E-03
49	GO:0017004: cytochrome complex assembly	1.93E-03
50	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.93E-03
51	GO:0010208: pollen wall assembly	1.93E-03
52	GO:0006997: nucleus organization	1.93E-03
53	GO:0009051: pentose-phosphate shunt, oxidative branch	2.18E-03
54	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.18E-03
55	GO:2000024: regulation of leaf development	2.18E-03
56	GO:0090332: stomatal closure	2.43E-03
57	GO:0030042: actin filament depolymerization	2.43E-03
58	GO:0006349: regulation of gene expression by genetic imprinting	2.43E-03
59	GO:0009750: response to fructose	2.98E-03
60	GO:0006378: mRNA polyadenylation	2.98E-03
61	GO:0010015: root morphogenesis	2.98E-03
62	GO:0000266: mitochondrial fission	3.26E-03
63	GO:0009266: response to temperature stimulus	3.86E-03
64	GO:0034605: cellular response to heat	3.86E-03
65	GO:0007015: actin filament organization	3.86E-03
66	GO:0006396: RNA processing	3.90E-03
67	GO:0009225: nucleotide-sugar metabolic process	4.18E-03
68	GO:0030150: protein import into mitochondrial matrix	4.83E-03
69	GO:0007010: cytoskeleton organization	4.83E-03
70	GO:0010187: negative regulation of seed germination	4.83E-03
71	GO:0051017: actin filament bundle assembly	4.83E-03
72	GO:0006334: nucleosome assembly	5.52E-03
73	GO:0061077: chaperone-mediated protein folding	5.52E-03
74	GO:0031348: negative regulation of defense response	5.87E-03
75	GO:0009686: gibberellin biosynthetic process	6.23E-03
76	GO:0009294: DNA mediated transformation	6.23E-03
77	GO:0009561: megagametogenesis	6.61E-03
78	GO:0006817: phosphate ion transport	6.61E-03
79	GO:0009306: protein secretion	6.61E-03
80	GO:0009451: RNA modification	6.67E-03
81	GO:0046686: response to cadmium ion	7.31E-03
82	GO:0051301: cell division	7.43E-03
83	GO:0010197: polar nucleus fusion	7.77E-03
84	GO:0006342: chromatin silencing	7.77E-03
85	GO:0009960: endosperm development	7.77E-03
86	GO:0042752: regulation of circadian rhythm	8.17E-03
87	GO:0048825: cotyledon development	8.58E-03
88	GO:0009749: response to glucose	8.58E-03
89	GO:0031047: gene silencing by RNA	9.42E-03
90	GO:0010286: heat acclimation	1.07E-02
91	GO:0016579: protein deubiquitination	1.12E-02
92	GO:0009911: positive regulation of flower development	1.17E-02
93	GO:0048366: leaf development	1.19E-02
94	GO:0009816: defense response to bacterium, incompatible interaction	1.21E-02
95	GO:0080167: response to karrikin	1.25E-02
96	GO:0048573: photoperiodism, flowering	1.31E-02
97	GO:0048767: root hair elongation	1.46E-02
98	GO:0009834: plant-type secondary cell wall biogenesis	1.51E-02
99	GO:0000724: double-strand break repair via homologous recombination	1.61E-02
100	GO:0045087: innate immune response	1.66E-02
101	GO:0016051: carbohydrate biosynthetic process	1.66E-02
102	GO:0042542: response to hydrogen peroxide	1.93E-02
103	GO:0009744: response to sucrose	1.99E-02
104	GO:0008283: cell proliferation	1.99E-02
105	GO:0009644: response to high light intensity	2.10E-02
106	GO:0009965: leaf morphogenesis	2.16E-02
107	GO:0006260: DNA replication	2.28E-02
108	GO:0009651: response to salt stress	2.31E-02
109	GO:0009909: regulation of flower development	2.65E-02
110	GO:0006417: regulation of translation	2.65E-02
111	GO:0009626: plant-type hypersensitive response	2.90E-02
112	GO:0009624: response to nematode	3.16E-02
113	GO:0009790: embryo development	4.14E-02
114	GO:0009793: embryo development ending in seed dormancy	4.63E-02
115	GO:0007623: circadian rhythm	4.67E-02
116	GO:0010228: vegetative to reproductive phase transition of meristem	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0033853: aspartate-prephenate aminotransferase activity	0.00E+00
2	GO:0102118: gibberellin A4 carboxyl methyltransferase activity	0.00E+00
3	GO:0033854: glutamate-prephenate aminotransferase activity	0.00E+00
4	GO:0015415: ATPase-coupled phosphate ion transmembrane transporter activity	0.00E+00
5	GO:0008026: ATP-dependent helicase activity	5.16E-08
6	GO:0003723: RNA binding	3.31E-07
7	GO:0000166: nucleotide binding	2.28E-06
8	GO:0004004: ATP-dependent RNA helicase activity	2.53E-06
9	GO:0017151: DEAD/H-box RNA helicase binding	8.96E-05
10	GO:0008114: phosphogluconate 2-dehydrogenase activity	8.96E-05
11	GO:0010341: gibberellin carboxyl-O-methyltransferase activity	8.96E-05
12	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	8.96E-05
13	GO:0003743: translation initiation factor activity	1.27E-04
14	GO:0003729: mRNA binding	3.80E-04
15	GO:0051082: unfolded protein binding	4.42E-04
16	GO:0043023: ribosomal large subunit binding	5.10E-04
17	GO:0001085: RNA polymerase II transcription factor binding	5.51E-04
18	GO:0002020: protease binding	8.59E-04
19	GO:0048040: UDP-glucuronate decarboxylase activity	1.05E-03
20	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.05E-03
21	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.05E-03
22	GO:0070403: NAD+ binding	1.25E-03
23	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.25E-03
24	GO:0005524: ATP binding	1.31E-03
25	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.42E-03
26	GO:0030515: snoRNA binding	1.46E-03
27	GO:0003682: chromatin binding	1.61E-03
28	GO:0042393: histone binding	1.77E-03
29	GO:0003676: nucleic acid binding	2.86E-03
30	GO:0001054: RNA polymerase I activity	2.98E-03
31	GO:0004521: endoribonuclease activity	3.26E-03
32	GO:0031072: heat shock protein binding	3.56E-03
33	GO:0015114: phosphate ion transmembrane transporter activity	3.56E-03
34	GO:0004519: endonuclease activity	3.58E-03
35	GO:0004386: helicase activity	4.13E-03
36	GO:0003887: DNA-directed DNA polymerase activity	4.50E-03
37	GO:0043130: ubiquitin binding	4.83E-03
38	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	5.38E-03
39	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	5.52E-03
40	GO:0018024: histone-lysine N-methyltransferase activity	6.99E-03
41	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.99E-03
42	GO:0004518: nuclease activity	9.42E-03
43	GO:0051015: actin filament binding	9.85E-03
44	GO:0008375: acetylglucosaminyltransferase activity	1.26E-02
45	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.36E-02
46	GO:0003677: DNA binding	1.40E-02
47	GO:0015293: symporter activity	2.16E-02
48	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.46E-02
49	GO:0031625: ubiquitin protein ligase binding	2.65E-02
50	GO:0016887: ATPase activity	2.88E-02
51	GO:0003779: actin binding	3.10E-02
52	GO:0030170: pyridoxal phosphate binding	4.00E-02
53	GO:0015144: carbohydrate transmembrane transporter activity	4.22E-02
54	GO:0005351: sugar:proton symporter activity	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0005730: nucleolus	2.31E-12
3	GO:0005634: nucleus	2.33E-06
4	GO:0005829: cytosol	4.00E-05
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	8.96E-05
6	GO:0016442: RISC complex	8.96E-05
7	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.41E-04
8	GO:0005847: mRNA cleavage and polyadenylation specificity factor complex	8.59E-04
9	GO:0016282: eukaryotic 43S preinitiation complex	1.05E-03
10	GO:0005667: transcription factor complex	1.07E-03
11	GO:0016363: nuclear matrix	1.25E-03
12	GO:0033290: eukaryotic 48S preinitiation complex	1.25E-03
13	GO:0034399: nuclear periphery	1.69E-03
14	GO:0010494: cytoplasmic stress granule	2.18E-03
15	GO:0005736: DNA-directed RNA polymerase I complex	2.18E-03
16	GO:0005635: nuclear envelope	2.86E-03
17	GO:0005852: eukaryotic translation initiation factor 3 complex	2.98E-03
18	GO:0005884: actin filament	2.98E-03
19	GO:0048471: perinuclear region of cytoplasm	2.98E-03
20	GO:0032040: small-subunit processome	3.26E-03
21	GO:0009506: plasmodesma	3.68E-03
22	GO:0043234: protein complex	4.50E-03
23	GO:0005741: mitochondrial outer membrane	5.52E-03
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.61E-03
25	GO:0005694: chromosome	9.42E-03
26	GO:0032580: Golgi cisterna membrane	1.03E-02
27	GO:0000932: P-body	1.17E-02
28	GO:0005643: nuclear pore	1.41E-02
29	GO:0000786: nucleosome	1.61E-02
30	GO:0005856: cytoskeleton	2.16E-02
31	GO:0005834: heterotrimeric G-protein complex	2.90E-02
32	GO:0005618: cell wall	2.96E-02
33	GO:0005623: cell	3.78E-02
34	GO:0005794: Golgi apparatus	4.75E-02