co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G20280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0046294: formaldehyde catabolic process	0.00E+00
4	GO:0010477: response to sulfur dioxide	0.00E+00
5	GO:0010336: gibberellic acid homeostasis	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0051246: regulation of protein metabolic process	0.00E+00
8	GO:0009661: chromoplast organization	0.00E+00
9	GO:0005997: xylulose metabolic process	0.00E+00
10	GO:0015813: L-glutamate transport	0.00E+00
11	GO:0080005: photosystem stoichiometry adjustment	8.20E-07
12	GO:0010343: singlet oxygen-mediated programmed cell death	8.20E-07
13	GO:0055114: oxidation-reduction process	1.88E-05
14	GO:0016120: carotene biosynthetic process	2.24E-05
15	GO:0010190: cytochrome b6f complex assembly	3.36E-05
16	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.36E-05
17	GO:0009396: folic acid-containing compound biosynthetic process	6.38E-05
18	GO:0010362: negative regulation of anion channel activity by blue light	1.27E-04
19	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.27E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	1.27E-04
21	GO:0071461: cellular response to redox state	1.27E-04
22	GO:0006430: lysyl-tRNA aminoacylation	1.27E-04
23	GO:0009638: phototropism	1.54E-04
24	GO:0035999: tetrahydrofolate interconversion	1.54E-04
25	GO:0015995: chlorophyll biosynthetic process	1.57E-04
26	GO:1901529: positive regulation of anion channel activity	2.94E-04
27	GO:0042853: L-alanine catabolic process	2.94E-04
28	GO:2000030: regulation of response to red or far red light	2.94E-04
29	GO:0010617: circadian regulation of calcium ion oscillation	2.94E-04
30	GO:0000256: allantoin catabolic process	2.94E-04
31	GO:0099402: plant organ development	2.94E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	2.94E-04
33	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	2.94E-04
34	GO:0006508: proteolysis	3.58E-04
35	GO:0009658: chloroplast organization	4.47E-04
36	GO:1902448: positive regulation of shade avoidance	4.86E-04
37	GO:0006013: mannose metabolic process	4.86E-04
38	GO:1901672: positive regulation of systemic acquired resistance	4.86E-04
39	GO:0010136: ureide catabolic process	4.86E-04
40	GO:0006696: ergosterol biosynthetic process	4.86E-04
41	GO:0016226: iron-sulfur cluster assembly	5.89E-04
42	GO:0046653: tetrahydrofolate metabolic process	6.95E-04
43	GO:0006809: nitric oxide biosynthetic process	6.95E-04
44	GO:0006145: purine nucleobase catabolic process	6.95E-04
45	GO:0009113: purine nucleobase biosynthetic process	6.95E-04
46	GO:1901332: negative regulation of lateral root development	6.95E-04
47	GO:2001141: regulation of RNA biosynthetic process	6.95E-04
48	GO:0010371: regulation of gibberellin biosynthetic process	6.95E-04
49	GO:0015729: oxaloacetate transport	6.95E-04
50	GO:0016117: carotenoid biosynthetic process	7.51E-04
51	GO:0010118: stomatal movement	8.09E-04
52	GO:0015994: chlorophyll metabolic process	9.21E-04
53	GO:0006552: leucine catabolic process	9.21E-04
54	GO:1902347: response to strigolactone	9.21E-04
55	GO:0009902: chloroplast relocation	9.21E-04
56	GO:0010021: amylopectin biosynthetic process	9.21E-04
57	GO:0019676: ammonia assimilation cycle	9.21E-04
58	GO:0015743: malate transport	9.21E-04
59	GO:0071423: malate transmembrane transport	1.16E-03
60	GO:0000304: response to singlet oxygen	1.16E-03
61	GO:0010117: photoprotection	1.16E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	1.16E-03
63	GO:0071805: potassium ion transmembrane transport	1.35E-03
64	GO:1901371: regulation of leaf morphogenesis	1.43E-03
65	GO:0060918: auxin transport	1.43E-03
66	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.43E-03
67	GO:0006555: methionine metabolic process	1.43E-03
68	GO:0010027: thylakoid membrane organization	1.51E-03
69	GO:0042128: nitrate assimilation	1.69E-03
70	GO:0019509: L-methionine salvage from methylthioadenosine	1.71E-03
71	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.71E-03
72	GO:0010189: vitamin E biosynthetic process	1.71E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	1.71E-03
74	GO:0010310: regulation of hydrogen peroxide metabolic process	1.71E-03
75	GO:0018298: protein-chromophore linkage	1.97E-03
76	GO:0051510: regulation of unidimensional cell growth	2.01E-03
77	GO:0050821: protein stabilization	2.32E-03
78	GO:0000105: histidine biosynthetic process	2.32E-03
79	GO:0006102: isocitrate metabolic process	2.32E-03
80	GO:0048564: photosystem I assembly	2.32E-03
81	GO:0009637: response to blue light	2.48E-03
82	GO:0009853: photorespiration	2.48E-03
83	GO:0071482: cellular response to light stimulus	2.65E-03
84	GO:0009657: plastid organization	2.65E-03
85	GO:0044030: regulation of DNA methylation	2.65E-03
86	GO:0019432: triglyceride biosynthetic process	3.00E-03
87	GO:0009821: alkaloid biosynthetic process	3.00E-03
88	GO:0010206: photosystem II repair	3.00E-03
89	GO:0034765: regulation of ion transmembrane transport	3.00E-03
90	GO:0009640: photomorphogenesis	3.19E-03
91	GO:0010205: photoinhibition	3.36E-03
92	GO:1900426: positive regulation of defense response to bacterium	3.36E-03
93	GO:0045036: protein targeting to chloroplast	3.73E-03
94	GO:0046777: protein autophosphorylation	3.93E-03
95	GO:0008285: negative regulation of cell proliferation	4.12E-03
96	GO:0043085: positive regulation of catalytic activity	4.12E-03
97	GO:0006879: cellular iron ion homeostasis	4.12E-03
98	GO:0006352: DNA-templated transcription, initiation	4.12E-03
99	GO:0016485: protein processing	4.12E-03
100	GO:0046686: response to cadmium ion	4.16E-03
101	GO:0051603: proteolysis involved in cellular protein catabolic process	4.44E-03
102	GO:0006790: sulfur compound metabolic process	4.52E-03
103	GO:0009785: blue light signaling pathway	4.93E-03
104	GO:0010075: regulation of meristem growth	4.93E-03
105	GO:0009767: photosynthetic electron transport chain	4.93E-03
106	GO:0005986: sucrose biosynthetic process	4.93E-03
107	GO:0010207: photosystem II assembly	5.36E-03
108	GO:0006071: glycerol metabolic process	6.25E-03
109	GO:2000377: regulation of reactive oxygen species metabolic process	6.71E-03
110	GO:0006418: tRNA aminoacylation for protein translation	7.19E-03
111	GO:0007017: microtubule-based process	7.19E-03
112	GO:0010073: meristem maintenance	7.19E-03
113	GO:0009058: biosynthetic process	8.04E-03
114	GO:0006730: one-carbon metabolic process	8.18E-03
115	GO:0009411: response to UV	8.69E-03
116	GO:0010227: floral organ abscission	8.69E-03
117	GO:0042391: regulation of membrane potential	1.03E-02
118	GO:0007623: circadian rhythm	1.05E-02
119	GO:0009735: response to cytokinin	1.09E-02
120	GO:0006662: glycerol ether metabolic process	1.09E-02
121	GO:0010182: sugar mediated signaling pathway	1.09E-02
122	GO:0010228: vegetative to reproductive phase transition of meristem	1.10E-02
123	GO:0006814: sodium ion transport	1.14E-02
124	GO:0042752: regulation of circadian rhythm	1.14E-02
125	GO:0009646: response to absence of light	1.14E-02
126	GO:0009791: post-embryonic development	1.20E-02
127	GO:0019252: starch biosynthetic process	1.20E-02
128	GO:0010193: response to ozone	1.26E-02
129	GO:0009816: defense response to bacterium, incompatible interaction	1.70E-02
130	GO:0006950: response to stress	1.83E-02
131	GO:0048481: plant ovule development	1.97E-02
132	GO:0000160: phosphorelay signal transduction system	2.04E-02
133	GO:0006811: ion transport	2.11E-02
134	GO:0010218: response to far red light	2.11E-02
135	GO:0010043: response to zinc ion	2.19E-02
136	GO:0007568: aging	2.19E-02
137	GO:0034599: cellular response to oxidative stress	2.41E-02
138	GO:0006099: tricarboxylic acid cycle	2.41E-02
139	GO:0010114: response to red light	2.80E-02
140	GO:0032259: methylation	2.87E-02
141	GO:0009644: response to high light intensity	2.96E-02
142	GO:0009408: response to heat	2.99E-02
143	GO:0006813: potassium ion transport	3.46E-02
144	GO:0006857: oligopeptide transport	3.63E-02
145	GO:0009624: response to nematode	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0004399: histidinol dehydrogenase activity	0.00E+00
4	GO:0008482: sulfite oxidase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	8.20E-07
9	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	8.20E-07
10	GO:0004848: ureidoglycolate hydrolase activity	3.08E-06
11	GO:0004180: carboxypeptidase activity	3.08E-06
12	GO:0008237: metallopeptidase activity	3.84E-06
13	GO:0009882: blue light photoreceptor activity	7.24E-06
14	GO:0004176: ATP-dependent peptidase activity	2.31E-05
15	GO:0004824: lysine-tRNA ligase activity	1.27E-04
16	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	1.27E-04
17	GO:0004856: xylulokinase activity	1.27E-04
18	GO:0051996: squalene synthase activity	1.27E-04
19	GO:0016783: sulfurtransferase activity	1.27E-04
20	GO:0030941: chloroplast targeting sequence binding	1.27E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.27E-04
22	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.27E-04
23	GO:0004485: methylcrotonoyl-CoA carboxylase activity	1.27E-04
24	GO:0046027: phospholipid:diacylglycerol acyltransferase activity	1.27E-04
25	GO:0046906: tetrapyrrole binding	1.27E-04
26	GO:0071949: FAD binding	1.28E-04
27	GO:0004222: metalloendopeptidase activity	2.08E-04
28	GO:0004046: aminoacylase activity	2.94E-04
29	GO:0015367: oxoglutarate:malate antiporter activity	2.94E-04
30	GO:0004329: formate-tetrahydrofolate ligase activity	2.94E-04
31	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.94E-04
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.94E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	2.94E-04
34	GO:0016887: ATPase activity	4.37E-04
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.86E-04
36	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.86E-04
37	GO:0004373: glycogen (starch) synthase activity	4.86E-04
38	GO:0003913: DNA photolyase activity	4.86E-04
39	GO:0032947: protein complex scaffold	4.86E-04
40	GO:0004557: alpha-galactosidase activity	4.86E-04
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	4.86E-04
42	GO:0050307: sucrose-phosphate phosphatase activity	4.86E-04
43	GO:0004075: biotin carboxylase activity	4.86E-04
44	GO:0004416: hydroxyacylglutathione hydrolase activity	6.95E-04
45	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	6.95E-04
46	GO:0015131: oxaloacetate transmembrane transporter activity	6.95E-04
47	GO:0016851: magnesium chelatase activity	6.95E-04
48	GO:0004792: thiosulfate sulfurtransferase activity	6.95E-04
49	GO:0008453: alanine-glyoxylate transaminase activity	9.21E-04
50	GO:0016987: sigma factor activity	9.21E-04
51	GO:0005313: L-glutamate transmembrane transporter activity	9.21E-04
52	GO:0009011: starch synthase activity	9.21E-04
53	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	9.21E-04
54	GO:0001053: plastid sigma factor activity	9.21E-04
55	GO:0051861: glycolipid binding	9.21E-04
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.10E-03
57	GO:0008374: O-acyltransferase activity	1.16E-03
58	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.16E-03
59	GO:0030151: molybdenum ion binding	1.16E-03
60	GO:0004709: MAP kinase kinase kinase activity	1.43E-03
61	GO:0000293: ferric-chelate reductase activity	1.43E-03
62	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.43E-03
63	GO:0004559: alpha-mannosidase activity	1.71E-03
64	GO:0005242: inward rectifier potassium channel activity	1.71E-03
65	GO:0008236: serine-type peptidase activity	1.87E-03
66	GO:0015140: malate transmembrane transporter activity	2.01E-03
67	GO:0019899: enzyme binding	2.01E-03
68	GO:0042802: identical protein binding	2.14E-03
69	GO:0016491: oxidoreductase activity	3.09E-03
70	GO:0004185: serine-type carboxypeptidase activity	3.19E-03
71	GO:0016844: strictosidine synthase activity	3.36E-03
72	GO:0051287: NAD binding	3.85E-03
73	GO:0031072: heat shock protein binding	4.93E-03
74	GO:0000155: phosphorelay sensor kinase activity	4.93E-03
75	GO:0051536: iron-sulfur cluster binding	6.71E-03
76	GO:0015079: potassium ion transmembrane transporter activity	7.19E-03
77	GO:0005506: iron ion binding	7.56E-03
78	GO:0047134: protein-disulfide reductase activity	9.75E-03
79	GO:0004812: aminoacyl-tRNA ligase activity	9.75E-03
80	GO:0030551: cyclic nucleotide binding	1.03E-02
81	GO:0005249: voltage-gated potassium channel activity	1.03E-02
82	GO:0008080: N-acetyltransferase activity	1.09E-02
83	GO:0010181: FMN binding	1.14E-02
84	GO:0004791: thioredoxin-disulfide reductase activity	1.14E-02
85	GO:0048038: quinone binding	1.26E-02
86	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.38E-02
87	GO:0008483: transaminase activity	1.50E-02
88	GO:0005524: ATP binding	1.58E-02
89	GO:0000287: magnesium ion binding	1.60E-02
90	GO:0016788: hydrolase activity, acting on ester bonds	1.66E-02
91	GO:0050897: cobalt ion binding	2.19E-02
92	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.48E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	2.96E-02
94	GO:0005198: structural molecule activity	3.04E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.46E-02
96	GO:0003777: microtubule motor activity	3.72E-02
97	GO:0022857: transmembrane transporter activity	4.26E-02
98	GO:0051082: unfolded protein binding	4.44E-02
99	GO:0016746: transferase activity, transferring acyl groups	4.53E-02
100	GO:0015035: protein disulfide oxidoreductase activity	4.53E-02
101	GO:0016301: kinase activity	4.57E-02
102	GO:0004672: protein kinase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	2.63E-18
3	GO:0009535: chloroplast thylakoid membrane	2.86E-05
4	GO:0031969: chloroplast membrane	8.55E-05
5	GO:0010007: magnesium chelatase complex	4.86E-04
6	GO:0016605: PML body	4.86E-04
7	GO:0042651: thylakoid membrane	4.91E-04
8	GO:0030286: dynein complex	9.21E-04
9	GO:0031359: integral component of chloroplast outer membrane	2.01E-03
10	GO:0009570: chloroplast stroma	2.24E-03
11	GO:0009501: amyloplast	2.32E-03
12	GO:0009536: plastid	2.73E-03
13	GO:0005777: peroxisome	3.27E-03
14	GO:0016604: nuclear body	3.36E-03
15	GO:0005773: vacuole	4.13E-03
16	GO:0009706: chloroplast inner membrane	6.09E-03
17	GO:0005875: microtubule associated complex	6.25E-03
18	GO:0009532: plastid stroma	7.68E-03
19	GO:0005739: mitochondrion	9.06E-03
20	GO:0005759: mitochondrial matrix	9.58E-03
21	GO:0009534: chloroplast thylakoid	1.56E-02
22	GO:0009707: chloroplast outer membrane	1.97E-02
23	GO:0031977: thylakoid lumen	2.64E-02
24	GO:0009941: chloroplast envelope	2.78E-02
25	GO:0031966: mitochondrial membrane	3.29E-02
26	GO:0016020: membrane	3.32E-02
27	GO:0009505: plant-type cell wall	3.94E-02
28	GO:0005747: mitochondrial respiratory chain complex I	3.98E-02