co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G18900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0006983: ER overload response	0.00E+00
4	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
5	GO:0010398: xylogalacturonan metabolic process	0.00E+00
6	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
7	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
8	GO:0044843: cell cycle G1/S phase transition	0.00E+00
9	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
10	GO:0006412: translation	1.05E-18
11	GO:0034976: response to endoplasmic reticulum stress	3.75E-10
12	GO:0046686: response to cadmium ion	1.83E-07
13	GO:0009735: response to cytokinin	2.64E-07
14	GO:0045454: cell redox homeostasis	1.92E-06
15	GO:0042254: ribosome biogenesis	6.07E-06
16	GO:0006413: translational initiation	1.48E-05
17	GO:0001676: long-chain fatty acid metabolic process	2.42E-05
18	GO:0006820: anion transport	3.00E-05
19	GO:0006626: protein targeting to mitochondrion	3.71E-05
20	GO:0006457: protein folding	6.94E-05
21	GO:0030150: protein import into mitochondrial matrix	7.61E-05
22	GO:0042964: thioredoxin reduction	2.53E-04
23	GO:1990542: mitochondrial transmembrane transport	2.53E-04
24	GO:0009820: alkaloid metabolic process	2.53E-04
25	GO:0010365: positive regulation of ethylene biosynthetic process	2.53E-04
26	GO:0006367: transcription initiation from RNA polymerase II promoter	2.90E-04
27	GO:0006452: translational frameshifting	5.59E-04
28	GO:0043066: negative regulation of apoptotic process	5.59E-04
29	GO:0051788: response to misfolded protein	5.59E-04
30	GO:0015786: UDP-glucose transport	5.59E-04
31	GO:0019752: carboxylic acid metabolic process	5.59E-04
32	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	5.59E-04
33	GO:0045905: positive regulation of translational termination	5.59E-04
34	GO:0045901: positive regulation of translational elongation	5.59E-04
35	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	5.59E-04
36	GO:0009651: response to salt stress	6.01E-04
37	GO:0006421: asparaginyl-tRNA aminoacylation	9.07E-04
38	GO:0032940: secretion by cell	9.07E-04
39	GO:0008652: cellular amino acid biosynthetic process	9.07E-04
40	GO:0055074: calcium ion homeostasis	9.07E-04
41	GO:0015783: GDP-fucose transport	9.07E-04
42	GO:0009410: response to xenobiotic stimulus	9.07E-04
43	GO:0045039: protein import into mitochondrial inner membrane	9.07E-04
44	GO:0006099: tricarboxylic acid cycle	9.12E-04
45	GO:0006869: lipid transport	9.14E-04
46	GO:0006979: response to oxidative stress	9.39E-04
47	GO:0072334: UDP-galactose transmembrane transport	1.29E-03
48	GO:0009647: skotomorphogenesis	1.29E-03
49	GO:0032981: mitochondrial respiratory chain complex I assembly	1.29E-03
50	GO:0071786: endoplasmic reticulum tubular network organization	1.29E-03
51	GO:0046513: ceramide biosynthetic process	1.29E-03
52	GO:0009413: response to flooding	1.29E-03
53	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.29E-03
54	GO:0051205: protein insertion into membrane	1.73E-03
55	GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter	1.73E-03
56	GO:0051365: cellular response to potassium ion starvation	1.73E-03
57	GO:0042274: ribosomal small subunit biogenesis	1.73E-03
58	GO:0009793: embryo development ending in seed dormancy	1.96E-03
59	GO:0006096: glycolytic process	2.13E-03
60	GO:0006564: L-serine biosynthetic process	2.21E-03
61	GO:0006461: protein complex assembly	2.21E-03
62	GO:1902183: regulation of shoot apical meristem development	2.21E-03
63	GO:0045116: protein neddylation	2.21E-03
64	GO:0010183: pollen tube guidance	2.54E-03
65	GO:0009228: thiamine biosynthetic process	2.72E-03
66	GO:0010193: response to ozone	2.72E-03
67	GO:0043248: proteasome assembly	2.72E-03
68	GO:0030163: protein catabolic process	3.09E-03
69	GO:1901001: negative regulation of response to salt stress	3.27E-03
70	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.27E-03
71	GO:0000054: ribosomal subunit export from nucleus	3.27E-03
72	GO:0009554: megasporogenesis	3.27E-03
73	GO:0009648: photoperiodism	3.27E-03
74	GO:0000338: protein deneddylation	3.86E-03
75	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.86E-03
76	GO:1900057: positive regulation of leaf senescence	3.86E-03
77	GO:0050829: defense response to Gram-negative bacterium	3.86E-03
78	GO:0006401: RNA catabolic process	3.86E-03
79	GO:0048528: post-embryonic root development	3.86E-03
80	GO:0042744: hydrogen peroxide catabolic process	4.23E-03
81	GO:0009642: response to light intensity	4.48E-03
82	GO:0006605: protein targeting	4.48E-03
83	GO:0031540: regulation of anthocyanin biosynthetic process	4.48E-03
84	GO:0006102: isocitrate metabolic process	4.48E-03
85	GO:0019430: removal of superoxide radicals	5.13E-03
86	GO:0001558: regulation of cell growth	5.13E-03
87	GO:0010497: plasmodesmata-mediated intercellular transport	5.13E-03
88	GO:0022900: electron transport chain	5.13E-03
89	GO:0006811: ion transport	5.63E-03
90	GO:0006098: pentose-phosphate shunt	5.81E-03
91	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.81E-03
92	GO:0015780: nucleotide-sugar transport	5.81E-03
93	GO:0098656: anion transmembrane transport	5.81E-03
94	GO:0010043: response to zinc ion	5.91E-03
95	GO:0043067: regulation of programmed cell death	6.52E-03
96	GO:0042761: very long-chain fatty acid biosynthetic process	6.52E-03
97	GO:2000280: regulation of root development	6.52E-03
98	GO:0010205: photoinhibition	6.52E-03
99	GO:0009617: response to bacterium	6.76E-03
100	GO:0006032: chitin catabolic process	7.26E-03
101	GO:0043069: negative regulation of programmed cell death	7.26E-03
102	GO:0006631: fatty acid metabolic process	7.70E-03
103	GO:0009682: induced systemic resistance	8.04E-03
104	GO:0072593: reactive oxygen species metabolic process	8.04E-03
105	GO:0015770: sucrose transport	8.04E-03
106	GO:0000272: polysaccharide catabolic process	8.04E-03
107	GO:0000038: very long-chain fatty acid metabolic process	8.04E-03
108	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.83E-03
109	GO:0008643: carbohydrate transport	9.04E-03
110	GO:0006807: nitrogen compound metabolic process	9.66E-03
111	GO:0006094: gluconeogenesis	9.66E-03
112	GO:0002237: response to molecule of bacterial origin	1.05E-02
113	GO:0009846: pollen germination	1.05E-02
114	GO:0006364: rRNA processing	1.13E-02
115	GO:0010167: response to nitrate	1.14E-02
116	GO:0090351: seedling development	1.14E-02
117	GO:0051603: proteolysis involved in cellular protein catabolic process	1.17E-02
118	GO:0007275: multicellular organism development	1.19E-02
119	GO:0009863: salicylic acid mediated signaling pathway	1.32E-02
120	GO:0006289: nucleotide-excision repair	1.32E-02
121	GO:0048316: seed development	1.38E-02
122	GO:0051302: regulation of cell division	1.42E-02
123	GO:0061077: chaperone-mediated protein folding	1.52E-02
124	GO:0015992: proton transport	1.52E-02
125	GO:0051260: protein homooligomerization	1.52E-02
126	GO:0048511: rhythmic process	1.52E-02
127	GO:0010431: seed maturation	1.52E-02
128	GO:0009814: defense response, incompatible interaction	1.62E-02
129	GO:0007005: mitochondrion organization	1.62E-02
130	GO:0080092: regulation of pollen tube growth	1.62E-02
131	GO:0030245: cellulose catabolic process	1.62E-02
132	GO:0040007: growth	1.72E-02
133	GO:0009409: response to cold	1.77E-02
134	GO:0010584: pollen exine formation	1.83E-02
135	GO:0006511: ubiquitin-dependent protein catabolic process	1.84E-02
136	GO:0042147: retrograde transport, endosome to Golgi	1.94E-02
137	GO:0042631: cellular response to water deprivation	2.05E-02
138	GO:0000413: protein peptidyl-prolyl isomerization	2.05E-02
139	GO:0006606: protein import into nucleus	2.05E-02
140	GO:0006414: translational elongation	2.12E-02
141	GO:0009058: biosynthetic process	2.13E-02
142	GO:0045489: pectin biosynthetic process	2.16E-02
143	GO:0006520: cellular amino acid metabolic process	2.16E-02
144	GO:0048868: pollen tube development	2.16E-02
145	GO:0048825: cotyledon development	2.39E-02
146	GO:0009749: response to glucose	2.39E-02
147	GO:0000302: response to reactive oxygen species	2.51E-02
148	GO:0006891: intra-Golgi vesicle-mediated transport	2.51E-02
149	GO:0040008: regulation of growth	2.66E-02
150	GO:0009567: double fertilization forming a zygote and endosperm	2.87E-02
151	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.12E-02
152	GO:0010029: regulation of seed germination	3.39E-02
153	GO:0016049: cell growth	3.80E-02
154	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
155	GO:0009631: cold acclimation	4.36E-02
156	GO:0009860: pollen tube growth	4.63E-02
157	GO:0009853: photorespiration	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
2	GO:0003796: lysozyme activity	0.00E+00
3	GO:0008752: FMN reductase activity	0.00E+00
4	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
5	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
6	GO:0016881: acid-amino acid ligase activity	0.00E+00
7	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
8	GO:0003735: structural constituent of ribosome	3.24E-24
9	GO:0003756: protein disulfide isomerase activity	2.73E-09
10	GO:0003729: mRNA binding	1.41E-07
11	GO:0015288: porin activity	5.16E-06
12	GO:0003746: translation elongation factor activity	5.70E-06
13	GO:0008308: voltage-gated anion channel activity	7.49E-06
14	GO:0003743: translation initiation factor activity	2.74E-05
15	GO:0102391: decanoate--CoA ligase activity	1.41E-04
16	GO:0004467: long-chain fatty acid-CoA ligase activity	1.85E-04
17	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.53E-04
18	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.53E-04
19	GO:0048037: cofactor binding	2.53E-04
20	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.53E-04
21	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.53E-04
22	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	2.53E-04
23	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.53E-04
24	GO:0008135: translation factor activity, RNA binding	2.90E-04
25	GO:0045309: protein phosphorylated amino acid binding	4.16E-04
26	GO:0004750: ribulose-phosphate 3-epimerase activity	5.59E-04
27	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.59E-04
28	GO:0019172: glyoxalase III activity	5.59E-04
29	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.59E-04
30	GO:0050291: sphingosine N-acyltransferase activity	5.59E-04
31	GO:0004618: phosphoglycerate kinase activity	5.59E-04
32	GO:0019781: NEDD8 activating enzyme activity	5.59E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	5.59E-04
34	GO:0019904: protein domain specific binding	5.62E-04
35	GO:0019843: rRNA binding	6.16E-04
36	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.42E-04
37	GO:0005515: protein binding	8.46E-04
38	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.07E-04
39	GO:0004816: asparagine-tRNA ligase activity	9.07E-04
40	GO:0005457: GDP-fucose transmembrane transporter activity	9.07E-04
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.07E-04
42	GO:0019201: nucleotide kinase activity	1.29E-03
43	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.29E-03
44	GO:0005460: UDP-glucose transmembrane transporter activity	1.29E-03
45	GO:0017077: oxidative phosphorylation uncoupler activity	1.29E-03
46	GO:0004298: threonine-type endopeptidase activity	1.35E-03
47	GO:0070628: proteasome binding	1.73E-03
48	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.73E-03
49	GO:0008022: protein C-terminus binding	1.73E-03
50	GO:0008514: organic anion transmembrane transporter activity	1.75E-03
51	GO:0008289: lipid binding	2.00E-03
52	GO:0005525: GTP binding	2.10E-03
53	GO:0005459: UDP-galactose transmembrane transporter activity	2.21E-03
54	GO:0008641: small protein activating enzyme activity	2.21E-03
55	GO:0005496: steroid binding	2.21E-03
56	GO:0004791: thioredoxin-disulfide reductase activity	2.37E-03
57	GO:0016853: isomerase activity	2.37E-03
58	GO:0031593: polyubiquitin binding	2.72E-03
59	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.72E-03
60	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.72E-03
61	GO:0035252: UDP-xylosyltransferase activity	2.72E-03
62	GO:0004332: fructose-bisphosphate aldolase activity	2.72E-03
63	GO:0004017: adenylate kinase activity	3.27E-03
64	GO:0008320: protein transmembrane transporter activity	3.86E-03
65	GO:0016831: carboxy-lyase activity	3.86E-03
66	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.86E-03
67	GO:0008235: metalloexopeptidase activity	3.86E-03
68	GO:0043022: ribosome binding	4.48E-03
69	GO:0003924: GTPase activity	4.86E-03
70	GO:0005507: copper ion binding	5.70E-03
71	GO:0001055: RNA polymerase II activity	6.52E-03
72	GO:0030955: potassium ion binding	6.52E-03
73	GO:0004743: pyruvate kinase activity	6.52E-03
74	GO:0004568: chitinase activity	7.26E-03
75	GO:0008515: sucrose transmembrane transporter activity	8.04E-03
76	GO:0001054: RNA polymerase I activity	8.04E-03
77	GO:0001056: RNA polymerase III activity	8.83E-03
78	GO:0004601: peroxidase activity	9.41E-03
79	GO:0015266: protein channel activity	9.66E-03
80	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.76E-03
81	GO:0051287: NAD binding	1.01E-02
82	GO:0051119: sugar transmembrane transporter activity	1.14E-02
83	GO:0008233: peptidase activity	1.21E-02
84	GO:0005528: FK506 binding	1.32E-02
85	GO:0003714: transcription corepressor activity	1.32E-02
86	GO:0043130: ubiquitin binding	1.32E-02
87	GO:0051087: chaperone binding	1.42E-02
88	GO:0008810: cellulase activity	1.72E-02
89	GO:0047134: protein-disulfide reductase activity	1.94E-02
90	GO:0030170: pyridoxal phosphate binding	2.24E-02
91	GO:0010181: FMN binding	2.27E-02
92	GO:0020037: heme binding	2.30E-02
93	GO:0004518: nuclease activity	2.63E-02
94	GO:0003684: damaged DNA binding	2.87E-02
95	GO:0008483: transaminase activity	3.00E-02
96	GO:0016597: amino acid binding	3.13E-02
97	GO:0003824: catalytic activity	3.80E-02
98	GO:0000166: nucleotide binding	4.14E-02
99	GO:0046982: protein heterodimerization activity	4.22E-02
100	GO:0000287: magnesium ion binding	4.22E-02
101	GO:0030145: manganese ion binding	4.36E-02
102	GO:0008422: beta-glucosidase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005840: ribosome	1.91E-17
4	GO:0022626: cytosolic ribosome	8.32E-17
5	GO:0005774: vacuolar membrane	1.38E-16
6	GO:0009506: plasmodesma	1.96E-15
7	GO:0022625: cytosolic large ribosomal subunit	2.72E-14
8	GO:0005829: cytosol	2.80E-14
9	GO:0022627: cytosolic small ribosomal subunit	4.22E-14
10	GO:0005788: endoplasmic reticulum lumen	2.48E-11
11	GO:0005783: endoplasmic reticulum	1.30E-10
12	GO:0005730: nucleolus	4.06E-09
13	GO:0005618: cell wall	1.51E-07
14	GO:0005741: mitochondrial outer membrane	3.61E-06
15	GO:0016020: membrane	5.78E-06
16	GO:0046930: pore complex	7.49E-06
17	GO:0000502: proteasome complex	2.26E-05
18	GO:0015934: large ribosomal subunit	7.90E-05
19	GO:0005886: plasma membrane	1.61E-04
20	GO:0005737: cytoplasm	1.88E-04
21	GO:0045252: oxoglutarate dehydrogenase complex	2.53E-04
22	GO:0009510: plasmodesmatal desmotubule	2.53E-04
23	GO:0005773: vacuole	2.92E-04
24	GO:0046861: glyoxysomal membrane	9.07E-04
25	GO:0005743: mitochondrial inner membrane	9.88E-04
26	GO:0005758: mitochondrial intermembrane space	1.12E-03
27	GO:0071782: endoplasmic reticulum tubular network	1.29E-03
28	GO:0005839: proteasome core complex	1.35E-03
29	GO:0009505: plant-type cell wall	1.51E-03
30	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.73E-03
31	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.75E-03
32	GO:0005635: nuclear envelope	1.88E-03
33	GO:0009507: chloroplast	1.96E-03
34	GO:0005789: endoplasmic reticulum membrane	2.33E-03
35	GO:0005851: eukaryotic translation initiation factor 2B complex	2.72E-03
36	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.86E-03
37	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.48E-03
38	GO:0009707: chloroplast outer membrane	5.11E-03
39	GO:0005742: mitochondrial outer membrane translocase complex	5.13E-03
40	GO:0000326: protein storage vacuole	5.13E-03
41	GO:0009514: glyoxysome	5.13E-03
42	GO:0008180: COP9 signalosome	5.81E-03
43	GO:0005736: DNA-directed RNA polymerase I complex	5.81E-03
44	GO:0005794: Golgi apparatus	6.00E-03
45	GO:0005666: DNA-directed RNA polymerase III complex	6.52E-03
46	GO:0000418: DNA-directed RNA polymerase IV complex	7.26E-03
47	GO:0005852: eukaryotic translation initiation factor 3 complex	8.04E-03
48	GO:0008541: proteasome regulatory particle, lid subcomplex	8.04E-03
49	GO:0005665: DNA-directed RNA polymerase II, core complex	8.83E-03
50	GO:0009570: chloroplast stroma	9.36E-03
51	GO:0019013: viral nucleocapsid	9.66E-03
52	GO:0070469: respiratory chain	1.42E-02
53	GO:0015935: small ribosomal subunit	1.52E-02
54	GO:0005623: cell	2.07E-02
55	GO:0009504: cell plate	2.39E-02
56	GO:0071944: cell periphery	2.75E-02
57	GO:0032580: Golgi cisterna membrane	2.87E-02
58	GO:0030529: intracellular ribonucleoprotein complex	3.26E-02
59	GO:0048046: apoplast	3.77E-02
60	GO:0000786: nucleosome	4.51E-02