co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G18140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0042817: pyridoxal metabolic process	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0019685: photosynthesis, dark reaction	0.00E+00
7	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
8	GO:0009583: detection of light stimulus	0.00E+00
9	GO:0007037: vacuolar phosphate transport	0.00E+00
10	GO:0009658: chloroplast organization	7.53E-08
11	GO:0016123: xanthophyll biosynthetic process	2.80E-07
12	GO:1901672: positive regulation of systemic acquired resistance	6.12E-06
13	GO:0016120: carotene biosynthetic process	4.22E-05
14	GO:0072387: flavin adenine dinucleotide metabolic process	1.86E-04
15	GO:0042371: vitamin K biosynthetic process	1.86E-04
16	GO:0071454: cellular response to anoxia	1.86E-04
17	GO:0048438: floral whorl development	1.86E-04
18	GO:0010362: negative regulation of anion channel activity by blue light	1.86E-04
19	GO:0071266: 'de novo' L-methionine biosynthetic process	1.86E-04
20	GO:0019346: transsulfuration	1.86E-04
21	GO:0019343: cysteine biosynthetic process via cystathionine	1.86E-04
22	GO:1900426: positive regulation of defense response to bacterium	2.69E-04
23	GO:0009638: phototropism	2.69E-04
24	GO:0009098: leucine biosynthetic process	2.69E-04
25	GO:0055114: oxidation-reduction process	3.17E-04
26	GO:0015995: chlorophyll biosynthetic process	3.22E-04
27	GO:0018298: protein-chromophore linkage	3.68E-04
28	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	4.19E-04
29	GO:0080005: photosystem stoichiometry adjustment	4.19E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	4.19E-04
31	GO:0050688: regulation of defense response to virus	4.19E-04
32	GO:0099402: plant organ development	4.19E-04
33	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.19E-04
34	GO:0010343: singlet oxygen-mediated programmed cell death	4.19E-04
35	GO:0006739: NADP metabolic process	4.19E-04
36	GO:1901529: positive regulation of anion channel activity	4.19E-04
37	GO:0006435: threonyl-tRNA aminoacylation	4.19E-04
38	GO:0009767: photosynthetic electron transport chain	4.78E-04
39	GO:0010207: photosystem II assembly	5.38E-04
40	GO:1902448: positive regulation of shade avoidance	6.84E-04
41	GO:0002230: positive regulation of defense response to virus by host	6.84E-04
42	GO:0009644: response to high light intensity	7.60E-04
43	GO:0008615: pyridoxine biosynthetic process	9.77E-04
44	GO:1901332: negative regulation of lateral root development	9.77E-04
45	GO:2001141: regulation of RNA biosynthetic process	9.77E-04
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.77E-04
47	GO:0090307: mitotic spindle assembly	9.77E-04
48	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	9.77E-04
49	GO:0031122: cytoplasmic microtubule organization	1.29E-03
50	GO:0006734: NADH metabolic process	1.29E-03
51	GO:1902347: response to strigolactone	1.29E-03
52	GO:0009902: chloroplast relocation	1.29E-03
53	GO:0042274: ribosomal small subunit biogenesis	1.29E-03
54	GO:0031935: regulation of chromatin silencing	1.29E-03
55	GO:0009765: photosynthesis, light harvesting	1.29E-03
56	GO:0008033: tRNA processing	1.34E-03
57	GO:0010118: stomatal movement	1.34E-03
58	GO:0010117: photoprotection	1.65E-03
59	GO:0046283: anthocyanin-containing compound metabolic process	1.65E-03
60	GO:0045038: protein import into chloroplast thylakoid membrane	1.65E-03
61	GO:0006282: regulation of DNA repair	1.65E-03
62	GO:0009616: virus induced gene silencing	1.65E-03
63	GO:0034052: positive regulation of plant-type hypersensitive response	1.65E-03
64	GO:0060918: auxin transport	2.03E-03
65	GO:1901371: regulation of leaf morphogenesis	2.03E-03
66	GO:0000741: karyogamy	2.03E-03
67	GO:0051607: defense response to virus	2.40E-03
68	GO:0010076: maintenance of floral meristem identity	2.43E-03
69	GO:0010189: vitamin E biosynthetic process	2.43E-03
70	GO:0010019: chloroplast-nucleus signaling pathway	2.43E-03
71	GO:0010310: regulation of hydrogen peroxide metabolic process	2.43E-03
72	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.43E-03
73	GO:0009816: defense response to bacterium, incompatible interaction	2.69E-03
74	GO:0051510: regulation of unidimensional cell growth	2.87E-03
75	GO:0006401: RNA catabolic process	2.87E-03
76	GO:0009772: photosynthetic electron transport in photosystem II	2.87E-03
77	GO:1900056: negative regulation of leaf senescence	2.87E-03
78	GO:0010050: vegetative phase change	2.87E-03
79	GO:0007623: circadian rhythm	3.09E-03
80	GO:0009704: de-etiolation	3.32E-03
81	GO:0048564: photosystem I assembly	3.32E-03
82	GO:0042255: ribosome assembly	3.32E-03
83	GO:0006353: DNA-templated transcription, termination	3.32E-03
84	GO:0006402: mRNA catabolic process	3.32E-03
85	GO:0032544: plastid translation	3.80E-03
86	GO:0071482: cellular response to light stimulus	3.80E-03
87	GO:0022900: electron transport chain	3.80E-03
88	GO:0009910: negative regulation of flower development	3.82E-03
89	GO:0009637: response to blue light	4.19E-03
90	GO:0000373: Group II intron splicing	4.30E-03
91	GO:0010380: regulation of chlorophyll biosynthetic process	4.82E-03
92	GO:0031425: chloroplast RNA processing	4.82E-03
93	GO:0010267: production of ta-siRNAs involved in RNA interference	4.82E-03
94	GO:0045036: protein targeting to chloroplast	5.36E-03
95	GO:0009744: response to sucrose	5.39E-03
96	GO:0043085: positive regulation of catalytic activity	5.92E-03
97	GO:0006352: DNA-templated transcription, initiation	5.92E-03
98	GO:0009773: photosynthetic electron transport in photosystem I	5.92E-03
99	GO:0045037: protein import into chloroplast stroma	6.51E-03
100	GO:0010582: floral meristem determinacy	6.51E-03
101	GO:0009793: embryo development ending in seed dormancy	6.88E-03
102	GO:0010075: regulation of meristem growth	7.11E-03
103	GO:0009725: response to hormone	7.11E-03
104	GO:0009785: blue light signaling pathway	7.11E-03
105	GO:0006364: rRNA processing	7.26E-03
106	GO:0046777: protein autophosphorylation	7.70E-03
107	GO:0009266: response to temperature stimulus	7.73E-03
108	GO:0034605: cellular response to heat	7.73E-03
109	GO:0019253: reductive pentose-phosphate cycle	7.73E-03
110	GO:0010025: wax biosynthetic process	9.03E-03
111	GO:2000377: regulation of reactive oxygen species metabolic process	9.71E-03
112	GO:0007017: microtubule-based process	1.04E-02
113	GO:0016226: iron-sulfur cluster assembly	1.19E-02
114	GO:0080092: regulation of pollen tube growth	1.19E-02
115	GO:0016117: carotenoid biosynthetic process	1.42E-02
116	GO:0070417: cellular response to cold	1.42E-02
117	GO:0010197: polar nucleus fusion	1.58E-02
118	GO:0009958: positive gravitropism	1.58E-02
119	GO:0015986: ATP synthesis coupled proton transport	1.66E-02
120	GO:0042752: regulation of circadian rhythm	1.66E-02
121	GO:0009646: response to absence of light	1.66E-02
122	GO:0008654: phospholipid biosynthetic process	1.75E-02
123	GO:0009791: post-embryonic development	1.75E-02
124	GO:0010193: response to ozone	1.83E-02
125	GO:0009451: RNA modification	1.84E-02
126	GO:0016032: viral process	1.92E-02
127	GO:0019761: glucosinolate biosynthetic process	1.92E-02
128	GO:0032502: developmental process	1.92E-02
129	GO:0031047: gene silencing by RNA	1.92E-02
130	GO:0000910: cytokinesis	2.29E-02
131	GO:0016126: sterol biosynthetic process	2.38E-02
132	GO:0009416: response to light stimulus	2.40E-02
133	GO:0000160: phosphorelay signal transduction system	2.98E-02
134	GO:0010218: response to far red light	3.08E-02
135	GO:0006811: ion transport	3.08E-02
136	GO:0007568: aging	3.19E-02
137	GO:0015979: photosynthesis	3.93E-02
138	GO:0010114: response to red light	4.08E-02
139	GO:0009640: photomorphogenesis	4.08E-02
140	GO:0000165: MAPK cascade	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.66E-06
6	GO:0016491: oxidoreductase activity	4.33E-06
7	GO:0010181: FMN binding	5.03E-06
8	GO:0009882: blue light photoreceptor activity	1.41E-05
9	GO:0048038: quinone binding	1.54E-04
10	GO:0052857: NADPHX epimerase activity	1.86E-04
11	GO:0030941: chloroplast targeting sequence binding	1.86E-04
12	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.86E-04
13	GO:0004123: cystathionine gamma-lyase activity	1.86E-04
14	GO:0046906: tetrapyrrole binding	1.86E-04
15	GO:0004733: pyridoxamine-phosphate oxidase activity	1.86E-04
16	GO:0004121: cystathionine beta-lyase activity	1.86E-04
17	GO:0052856: NADHX epimerase activity	1.86E-04
18	GO:0071949: FAD binding	2.25E-04
19	GO:0004829: threonine-tRNA ligase activity	4.19E-04
20	GO:0003723: RNA binding	6.72E-04
21	GO:0003962: cystathionine gamma-synthase activity	6.84E-04
22	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.84E-04
23	GO:0000900: translation repressor activity, nucleic acid binding	6.84E-04
24	GO:0004180: carboxypeptidase activity	6.84E-04
25	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.84E-04
26	GO:0032947: protein complex scaffold	6.84E-04
27	GO:0004848: ureidoglycolate hydrolase activity	6.84E-04
28	GO:0004148: dihydrolipoyl dehydrogenase activity	6.84E-04
29	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.29E-03
30	GO:0001053: plastid sigma factor activity	1.29E-03
31	GO:0051861: glycolipid binding	1.29E-03
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.29E-03
33	GO:0016987: sigma factor activity	1.29E-03
34	GO:0043015: gamma-tubulin binding	1.29E-03
35	GO:0051011: microtubule minus-end binding	1.65E-03
36	GO:0004605: phosphatidate cytidylyltransferase activity	2.03E-03
37	GO:0000293: ferric-chelate reductase activity	2.03E-03
38	GO:0015631: tubulin binding	2.43E-03
39	GO:0019899: enzyme binding	2.87E-03
40	GO:0042802: identical protein binding	4.19E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	5.83E-03
42	GO:0005089: Rho guanyl-nucleotide exchange factor activity	5.92E-03
43	GO:0051287: NAD binding	6.52E-03
44	GO:0000155: phosphorelay sensor kinase activity	7.11E-03
45	GO:0000175: 3'-5'-exoribonuclease activity	7.11E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.73E-03
47	GO:0051536: iron-sulfur cluster binding	9.71E-03
48	GO:0004176: ATP-dependent peptidase activity	1.11E-02
49	GO:0022891: substrate-specific transmembrane transporter activity	1.26E-02
50	GO:0004519: endonuclease activity	1.29E-02
51	GO:0019843: rRNA binding	1.30E-02
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.33E-02
53	GO:0003727: single-stranded RNA binding	1.34E-02
54	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.58E-02
55	GO:0008080: N-acetyltransferase activity	1.58E-02
56	GO:0004872: receptor activity	1.75E-02
57	GO:0005200: structural constituent of cytoskeleton	2.19E-02
58	GO:0008483: transaminase activity	2.19E-02
59	GO:0008237: metallopeptidase activity	2.19E-02
60	GO:0016168: chlorophyll binding	2.48E-02
61	GO:0000287: magnesium ion binding	2.73E-02
62	GO:0008236: serine-type peptidase activity	2.78E-02
63	GO:0004222: metalloendopeptidase activity	3.08E-02
64	GO:0050897: cobalt ion binding	3.19E-02
65	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.63E-02
66	GO:0005198: structural molecule activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.08E-22
2	GO:0009535: chloroplast thylakoid membrane	9.11E-13
3	GO:0009706: chloroplast inner membrane	1.86E-05
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-04
5	GO:0031969: chloroplast membrane	2.52E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	4.19E-04
7	GO:0008274: gamma-tubulin ring complex	4.19E-04
8	GO:0016605: PML body	6.84E-04
9	GO:0042651: thylakoid membrane	8.15E-04
10	GO:0000923: equatorial microtubule organizing center	9.77E-04
11	GO:0009570: chloroplast stroma	1.11E-03
12	GO:0030286: dynein complex	1.29E-03
13	GO:0009536: plastid	1.97E-03
14	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.03E-03
15	GO:0005655: nucleolar ribonuclease P complex	2.43E-03
16	GO:0031359: integral component of chloroplast outer membrane	2.87E-03
17	GO:0009941: chloroplast envelope	3.66E-03
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.80E-03
19	GO:0000922: spindle pole	4.30E-03
20	GO:0016604: nuclear body	4.82E-03
21	GO:0016324: apical plasma membrane	5.36E-03
22	GO:0048471: perinuclear region of cytoplasm	5.92E-03
23	GO:0009508: plastid chromosome	7.11E-03
24	GO:0030095: chloroplast photosystem II	7.73E-03
25	GO:0009579: thylakoid	7.81E-03
26	GO:0005875: microtubule associated complex	9.03E-03
27	GO:0043234: protein complex	9.03E-03
28	GO:0009543: chloroplast thylakoid lumen	1.30E-02
29	GO:0005623: cell	1.33E-02
30	GO:0009523: photosystem II	1.75E-02
31	GO:0010319: stromule	2.19E-02
32	GO:0009295: nucleoid	2.19E-02
33	GO:0009707: chloroplast outer membrane	2.88E-02
34	GO:0009534: chloroplast thylakoid	3.04E-02
35	GO:0005773: vacuole	3.35E-02
36	GO:0031977: thylakoid lumen	3.85E-02
37	GO:0031966: mitochondrial membrane	4.79E-02