co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G17930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
2	GO:0055122: response to very low light intensity stimulus	0.00E+00
3	GO:0039694: viral RNA genome replication	0.00E+00
4	GO:0090069: regulation of ribosome biogenesis	0.00E+00
5	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
6	GO:0006364: rRNA processing	1.56E-11
7	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.54E-07
8	GO:0006405: RNA export from nucleus	4.70E-06
9	GO:0010501: RNA secondary structure unwinding	6.03E-06
10	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.05E-05
11	GO:0036228: protein targeting to nuclear inner membrane	5.03E-05
12	GO:0000469: cleavage involved in rRNA processing	5.03E-05
13	GO:0030490: maturation of SSU-rRNA	5.03E-05
14	GO:0010930: negative regulation of auxin mediated signaling pathway	5.03E-05
15	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	5.03E-05
16	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	5.03E-05
17	GO:2000232: regulation of rRNA processing	5.03E-05
18	GO:0080009: mRNA methylation	1.23E-04
19	GO:0009553: embryo sac development	1.53E-04
20	GO:0042780: tRNA 3'-end processing	2.11E-04
21	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.11E-04
22	GO:0045604: regulation of epidermal cell differentiation	2.11E-04
23	GO:0006606: protein import into nucleus	2.41E-04
24	GO:0048825: cotyledon development	3.01E-04
25	GO:0007276: gamete generation	3.09E-04
26	GO:0009451: RNA modification	3.45E-04
27	GO:0046345: abscisic acid catabolic process	4.15E-04
28	GO:0042254: ribosome biogenesis	5.99E-04
29	GO:0030488: tRNA methylation	7.68E-04
30	GO:0048444: floral organ morphogenesis	7.68E-04
31	GO:0010077: maintenance of inflorescence meristem identity	7.68E-04
32	GO:0045995: regulation of embryonic development	8.97E-04
33	GO:0001522: pseudouridine synthesis	1.03E-03
34	GO:0000028: ribosomal small subunit assembly	1.03E-03
35	GO:0019827: stem cell population maintenance	1.03E-03
36	GO:0009880: embryonic pattern specification	1.17E-03
37	GO:2000024: regulation of leaf development	1.32E-03
38	GO:0001708: cell fate specification	1.32E-03
39	GO:0006349: regulation of gene expression by genetic imprinting	1.47E-03
40	GO:0006913: nucleocytoplasmic transport	1.79E-03
41	GO:0010582: floral meristem determinacy	1.96E-03
42	GO:2000012: regulation of auxin polar transport	2.14E-03
43	GO:0009790: embryo development	2.61E-03
44	GO:0051302: regulation of cell division	3.08E-03
45	GO:0009561: megagametogenesis	3.93E-03
46	GO:0051028: mRNA transport	4.15E-03
47	GO:0009793: embryo development ending in seed dormancy	4.15E-03
48	GO:0009960: endosperm development	4.60E-03
49	GO:0010305: leaf vascular tissue pattern formation	4.60E-03
50	GO:0009926: auxin polar transport	1.16E-02
51	GO:0006260: DNA replication	1.33E-02
52	GO:0006417: regulation of translation	1.54E-02
53	GO:0009555: pollen development	1.54E-02
54	GO:0051301: cell division	1.68E-02
55	GO:0010228: vegetative to reproductive phase transition of meristem	2.81E-02
56	GO:0008380: RNA splicing	3.08E-02
57	GO:0048366: leaf development	4.17E-02
58	GO:0045892: negative regulation of transcription, DNA-templated	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
2	GO:0000166: nucleotide binding	6.71E-12
3	GO:0003723: RNA binding	2.89E-09
4	GO:0008026: ATP-dependent helicase activity	4.44E-09
5	GO:0004004: ATP-dependent RNA helicase activity	4.67E-07
6	GO:0001054: RNA polymerase I activity	5.30E-07
7	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.44E-06
8	GO:0030515: snoRNA binding	1.45E-05
9	GO:0017056: structural constituent of nuclear pore	1.93E-05
10	GO:0005487: nucleocytoplasmic transporter activity	3.83E-05
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.03E-05
12	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.23E-04
13	GO:0043021: ribonucleoprotein complex binding	1.23E-04
14	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.11E-04
15	GO:0043022: ribosome binding	1.03E-03
16	GO:0004519: endonuclease activity	1.37E-03
17	GO:0005543: phospholipid binding	1.79E-03
18	GO:0004521: endoribonuclease activity	1.96E-03
19	GO:0001056: RNA polymerase III activity	1.96E-03
20	GO:0003887: DNA-directed DNA polymerase activity	2.69E-03
21	GO:0003713: transcription coactivator activity	4.60E-03
22	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	7.96E-03
23	GO:0004386: helicase activity	1.96E-02
24	GO:0005525: GTP binding	2.53E-02
25	GO:0008168: methyltransferase activity	3.61E-02
26	GO:0003676: nucleic acid binding	3.68E-02
27	GO:0005524: ATP binding	4.05E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0036396: MIS complex	0.00E+00
4	GO:0019034: viral replication complex	0.00E+00
5	GO:0005730: nucleolus	3.08E-16
6	GO:0005634: nucleus	1.89E-12
7	GO:0070545: PeBoW complex	1.54E-07
8	GO:0005736: DNA-directed RNA polymerase I complex	2.14E-07
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.29E-06
10	GO:0030688: preribosome, small subunit precursor	5.03E-05
11	GO:0044611: nuclear pore inner ring	5.03E-05
12	GO:0032040: small-subunit processome	6.46E-05
13	GO:0044613: nuclear pore central transport channel	1.23E-04
14	GO:0030687: preribosome, large subunit precursor	8.97E-04
15	GO:0034399: nuclear periphery	1.03E-03
16	GO:0005666: DNA-directed RNA polymerase III complex	1.47E-03
17	GO:0043234: protein complex	2.69E-03
18	GO:0042651: thylakoid membrane	3.08E-03
19	GO:0005643: nuclear pore	8.24E-03
20	GO:0005635: nuclear envelope	1.51E-02
21	GO:0016607: nuclear speck	1.65E-02
22	GO:0005834: heterotrimeric G-protein complex	1.69E-02
23	GO:0005654: nucleoplasm	2.12E-02
24	GO:0005829: cytosol	4.40E-02