co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G16060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046085: adenosine metabolic process	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0007530: sex determination	0.00E+00
5	GO:0006412: translation	1.53E-88
6	GO:0042254: ribosome biogenesis	1.05E-35
7	GO:0000027: ribosomal large subunit assembly	8.36E-10
8	GO:1902626: assembly of large subunit precursor of preribosome	1.27E-05
9	GO:0002181: cytoplasmic translation	1.27E-05
10	GO:0000387: spliceosomal snRNP assembly	1.76E-05
11	GO:0000398: mRNA splicing, via spliceosome	9.36E-05
12	GO:0000028: ribosomal small subunit assembly	2.69E-04
13	GO:0015801: aromatic amino acid transport	2.77E-04
14	GO:2001006: regulation of cellulose biosynthetic process	2.77E-04
15	GO:0000494: box C/D snoRNA 3'-end processing	2.77E-04
16	GO:1990258: histone glutamine methylation	2.77E-04
17	GO:0009245: lipid A biosynthetic process	3.99E-04
18	GO:0006432: phenylalanyl-tRNA aminoacylation	6.09E-04
19	GO:0071668: plant-type cell wall assembly	6.09E-04
20	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	6.09E-04
21	GO:0045041: protein import into mitochondrial intermembrane space	6.09E-04
22	GO:0010198: synergid death	6.09E-04
23	GO:0006414: translational elongation	6.32E-04
24	GO:0006626: protein targeting to mitochondrion	8.26E-04
25	GO:0009793: embryo development ending in seed dormancy	9.27E-04
26	GO:0045793: positive regulation of cell size	9.88E-04
27	GO:0008216: spermidine metabolic process	9.88E-04
28	GO:0032786: positive regulation of DNA-templated transcription, elongation	9.88E-04
29	GO:0009558: embryo sac cellularization	1.41E-03
30	GO:0032877: positive regulation of DNA endoreduplication	1.41E-03
31	GO:0070301: cellular response to hydrogen peroxide	1.41E-03
32	GO:0051085: chaperone mediated protein folding requiring cofactor	1.41E-03
33	GO:0006241: CTP biosynthetic process	1.41E-03
34	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.41E-03
35	GO:0006165: nucleoside diphosphate phosphorylation	1.41E-03
36	GO:0006228: UTP biosynthetic process	1.41E-03
37	GO:0009165: nucleotide biosynthetic process	1.89E-03
38	GO:0051781: positive regulation of cell division	1.89E-03
39	GO:0006183: GTP biosynthetic process	1.89E-03
40	GO:0031167: rRNA methylation	2.41E-03
41	GO:0045040: protein import into mitochondrial outer membrane	2.98E-03
42	GO:0043248: proteasome assembly	2.98E-03
43	GO:0080156: mitochondrial mRNA modification	3.09E-03
44	GO:0006458: 'de novo' protein folding	3.58E-03
45	GO:0009955: adaxial/abaxial pattern specification	3.58E-03
46	GO:0000911: cytokinesis by cell plate formation	3.58E-03
47	GO:0042026: protein refolding	3.58E-03
48	GO:0009808: lignin metabolic process	5.62E-03
49	GO:0001510: RNA methylation	5.62E-03
50	GO:0048589: developmental growth	6.37E-03
51	GO:0009651: response to salt stress	6.49E-03
52	GO:0006325: chromatin organization	7.97E-03
53	GO:0015770: sucrose transport	8.82E-03
54	GO:0016925: protein sumoylation	9.70E-03
55	GO:0009644: response to high light intensity	1.03E-02
56	GO:0010628: positive regulation of gene expression	1.06E-02
57	GO:0010102: lateral root morphogenesis	1.06E-02
58	GO:0009965: leaf morphogenesis	1.07E-02
59	GO:0006446: regulation of translational initiation	1.16E-02
60	GO:0048467: gynoecium development	1.16E-02
61	GO:0010020: chloroplast fission	1.16E-02
62	GO:0006406: mRNA export from nucleus	1.46E-02
63	GO:0006289: nucleotide-excision repair	1.46E-02
64	GO:0009116: nucleoside metabolic process	1.46E-02
65	GO:0030150: protein import into mitochondrial matrix	1.46E-02
66	GO:0003333: amino acid transmembrane transport	1.67E-02
67	GO:0051260: protein homooligomerization	1.67E-02
68	GO:0010431: seed maturation	1.67E-02
69	GO:0061077: chaperone-mediated protein folding	1.67E-02
70	GO:0007005: mitochondrion organization	1.78E-02
71	GO:0045454: cell redox homeostasis	1.84E-02
72	GO:0009409: response to cold	2.22E-02
73	GO:0008033: tRNA processing	2.25E-02
74	GO:0006662: glycerol ether metabolic process	2.37E-02
75	GO:0010197: polar nucleus fusion	2.37E-02
76	GO:0006397: mRNA processing	2.53E-02
77	GO:0010183: pollen tube guidance	2.63E-02
78	GO:0046686: response to cadmium ion	2.81E-02
79	GO:0006633: fatty acid biosynthetic process	2.90E-02
80	GO:0010090: trichome morphogenesis	3.02E-02
81	GO:0006464: cellular protein modification process	3.16E-02
82	GO:0010286: heat acclimation	3.30E-02
83	GO:0000910: cytokinesis	3.44E-02
84	GO:0008380: RNA splicing	3.79E-02
85	GO:0000724: double-strand break repair via homologous recombination	4.95E-02
86	GO:0006865: amino acid transport	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0003735: structural constituent of ribosome	4.46E-113
2	GO:0003729: mRNA binding	2.08E-26
3	GO:0019843: rRNA binding	1.53E-09
4	GO:0008649: rRNA methyltransferase activity	1.27E-05
5	GO:0001055: RNA polymerase II activity	1.76E-05
6	GO:0001054: RNA polymerase I activity	2.95E-05
7	GO:0001056: RNA polymerase III activity	3.70E-05
8	GO:0031177: phosphopantetheine binding	1.18E-04
9	GO:0000035: acyl binding	1.62E-04
10	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.69E-04
11	GO:0072549: monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity	2.77E-04
12	GO:0072548: dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity	2.77E-04
13	GO:1990259: histone-glutamine methyltransferase activity	2.77E-04
14	GO:0035614: snRNA stem-loop binding	2.77E-04
15	GO:0072547: tricoumaroylspermidine meta-hydroxylase activity	2.77E-04
16	GO:0030619: U1 snRNA binding	6.09E-04
17	GO:0015173: aromatic amino acid transmembrane transporter activity	6.09E-04
18	GO:0004826: phenylalanine-tRNA ligase activity	6.09E-04
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.09E-04
20	GO:0003723: RNA binding	6.31E-04
21	GO:0044183: protein binding involved in protein folding	6.38E-04
22	GO:0070180: large ribosomal subunit rRNA binding	9.88E-04
23	GO:0008430: selenium binding	9.88E-04
24	GO:0070181: small ribosomal subunit rRNA binding	9.88E-04
25	GO:0004550: nucleoside diphosphate kinase activity	1.41E-03
26	GO:0008097: 5S rRNA binding	1.41E-03
27	GO:0004749: ribose phosphate diphosphokinase activity	1.41E-03
28	GO:0010011: auxin binding	1.89E-03
29	GO:0000993: RNA polymerase II core binding	1.89E-03
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.03E-03
31	GO:0005275: amine transmembrane transporter activity	2.41E-03
32	GO:0031386: protein tag	2.41E-03
33	GO:0051082: unfolded protein binding	3.19E-03
34	GO:0051920: peroxiredoxin activity	3.58E-03
35	GO:0042162: telomeric DNA binding	4.23E-03
36	GO:0030515: snoRNA binding	4.23E-03
37	GO:0043022: ribosome binding	4.90E-03
38	GO:0016209: antioxidant activity	4.90E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.83E-03
40	GO:0003746: translation elongation factor activity	7.40E-03
41	GO:0003697: single-stranded DNA binding	7.40E-03
42	GO:0008515: sucrose transmembrane transporter activity	8.82E-03
43	GO:0008794: arsenate reductase (glutaredoxin) activity	8.82E-03
44	GO:0000049: tRNA binding	9.70E-03
45	GO:0031072: heat shock protein binding	1.06E-02
46	GO:0015266: protein channel activity	1.06E-02
47	GO:0051119: sugar transmembrane transporter activity	1.25E-02
48	GO:0015035: protein disulfide oxidoreductase activity	1.90E-02
49	GO:0003727: single-stranded RNA binding	2.01E-02
50	GO:0047134: protein-disulfide reductase activity	2.13E-02
51	GO:0004791: thioredoxin-disulfide reductase activity	2.50E-02
52	GO:0004872: receptor activity	2.63E-02
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.02E-02
54	GO:0050897: cobalt ion binding	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0005840: ribosome	3.70E-83
4	GO:0022625: cytosolic large ribosomal subunit	1.67E-66
5	GO:0022626: cytosolic ribosome	3.44E-61
6	GO:0022627: cytosolic small ribosomal subunit	1.61E-40
7	GO:0005730: nucleolus	2.41E-24
8	GO:0005737: cytoplasm	3.70E-21
9	GO:0005829: cytosol	4.26E-20
10	GO:0009506: plasmodesma	1.50E-10
11	GO:0015934: large ribosomal subunit	7.78E-09
12	GO:0005774: vacuolar membrane	2.29E-08
13	GO:0005732: small nucleolar ribonucleoprotein complex	4.16E-07
14	GO:0016020: membrane	2.00E-06
15	GO:0005736: DNA-directed RNA polymerase I complex	1.30E-05
16	GO:0005666: DNA-directed RNA polymerase III complex	1.76E-05
17	GO:0005665: DNA-directed RNA polymerase II, core complex	3.70E-05
18	GO:0019013: viral nucleocapsid	4.57E-05
19	GO:0000419: DNA-directed RNA polymerase V complex	7.90E-05
20	GO:0015935: small ribosomal subunit	1.24E-04
21	GO:0032044: DSIF complex	2.77E-04
22	GO:0005742: mitochondrial outer membrane translocase complex	3.32E-04
23	GO:0005685: U1 snRNP	3.99E-04
24	GO:0005681: spliceosomal complex	4.00E-04
25	GO:0005773: vacuole	4.62E-04
26	GO:0071011: precatalytic spliceosome	4.74E-04
27	GO:0015030: Cajal body	4.74E-04
28	GO:0005618: cell wall	5.09E-04
29	GO:0000418: DNA-directed RNA polymerase IV complex	5.52E-04
30	GO:0035145: exon-exon junction complex	6.09E-04
31	GO:0005697: telomerase holoenzyme complex	6.09E-04
32	GO:0071013: catalytic step 2 spliceosome	6.38E-04
33	GO:0034719: SMN-Sm protein complex	9.88E-04
34	GO:0005853: eukaryotic translation elongation factor 1 complex	9.88E-04
35	GO:0000439: core TFIIH complex	9.88E-04
36	GO:0070469: respiratory chain	1.40E-03
37	GO:1990726: Lsm1-7-Pat1 complex	1.41E-03
38	GO:0005682: U5 snRNP	1.89E-03
39	GO:0005687: U4 snRNP	2.41E-03
40	GO:0097526: spliceosomal tri-snRNP complex	2.41E-03
41	GO:0031428: box C/D snoRNP complex	2.98E-03
42	GO:0005689: U12-type spliceosomal complex	3.58E-03
43	GO:0016272: prefoldin complex	3.58E-03
44	GO:0005762: mitochondrial large ribosomal subunit	3.58E-03
45	GO:0071004: U2-type prespliceosome	4.90E-03
46	GO:0005688: U6 snRNP	4.90E-03
47	GO:0046540: U4/U6 x U5 tri-snRNP complex	5.62E-03
48	GO:0005686: U2 snRNP	7.97E-03
49	GO:0005852: eukaryotic translation initiation factor 3 complex	8.82E-03
50	GO:0008541: proteasome regulatory particle, lid subcomplex	8.82E-03
51	GO:0031307: integral component of mitochondrial outer membrane	9.70E-03
52	GO:0032040: small-subunit processome	9.70E-03
53	GO:0005886: plasma membrane	1.00E-02
54	GO:0009508: plastid chromosome	1.06E-02
55	GO:0005758: mitochondrial intermembrane space	1.46E-02
56	GO:0009706: chloroplast inner membrane	1.84E-02
57	GO:0009507: chloroplast	1.87E-02
58	GO:0005654: nucleoplasm	2.25E-02
59	GO:0005759: mitochondrial matrix	2.90E-02
60	GO:0009295: nucleoid	3.30E-02
61	GO:0005622: intracellular	3.33E-02
62	GO:0030529: intracellular ribonucleoprotein complex	3.58E-02
63	GO:0000932: P-body	3.58E-02
64	GO:0005788: endoplasmic reticulum lumen	3.73E-02
65	GO:0000786: nucleosome	4.95E-02