co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G15910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0010243: response to organonitrogen compound	0.00E+00
3	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
4	GO:0098586: cellular response to virus	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
7	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
8	GO:0071483: cellular response to blue light	1.19E-07
9	GO:0042754: negative regulation of circadian rhythm	1.62E-06
10	GO:0007623: circadian rhythm	4.93E-06
11	GO:2001141: regulation of RNA biosynthetic process	1.38E-05
12	GO:0015995: chlorophyll biosynthetic process	2.03E-05
13	GO:0009902: chloroplast relocation	2.56E-05
14	GO:0016120: carotene biosynthetic process	4.13E-05
15	GO:0010236: plastoquinone biosynthetic process	4.13E-05
16	GO:0010190: cytochrome b6f complex assembly	6.12E-05
17	GO:0009658: chloroplast organization	1.59E-04
18	GO:0048574: long-day photoperiodism, flowering	1.81E-04
19	GO:0010100: negative regulation of photomorphogenesis	1.81E-04
20	GO:0046467: membrane lipid biosynthetic process	1.84E-04
21	GO:0071461: cellular response to redox state	1.84E-04
22	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.84E-04
23	GO:0010362: negative regulation of anion channel activity by blue light	1.84E-04
24	GO:0006352: DNA-templated transcription, initiation	3.60E-04
25	GO:0018298: protein-chromophore linkage	3.60E-04
26	GO:0006898: receptor-mediated endocytosis	4.15E-04
27	GO:0007154: cell communication	4.15E-04
28	GO:0000256: allantoin catabolic process	4.15E-04
29	GO:1904143: positive regulation of carotenoid biosynthetic process	4.15E-04
30	GO:0080183: response to photooxidative stress	4.15E-04
31	GO:0043100: pyrimidine nucleobase salvage	4.15E-04
32	GO:0046741: transport of virus in host, tissue to tissue	4.15E-04
33	GO:2000030: regulation of response to red or far red light	4.15E-04
34	GO:0043496: regulation of protein homodimerization activity	4.15E-04
35	GO:0080005: photosystem stoichiometry adjustment	4.15E-04
36	GO:0005986: sucrose biosynthetic process	4.70E-04
37	GO:0010207: photosystem II assembly	5.30E-04
38	GO:0010136: ureide catabolic process	6.76E-04
39	GO:1901562: response to paraquat	6.76E-04
40	GO:0015940: pantothenate biosynthetic process	6.76E-04
41	GO:0006696: ergosterol biosynthetic process	6.76E-04
42	GO:0071836: nectar secretion	6.76E-04
43	GO:0044375: regulation of peroxisome size	6.76E-04
44	GO:0016570: histone modification	6.76E-04
45	GO:0019419: sulfate reduction	6.76E-04
46	GO:0008299: isoprenoid biosynthetic process	8.02E-04
47	GO:0016226: iron-sulfur cluster assembly	9.58E-04
48	GO:0006168: adenine salvage	9.65E-04
49	GO:0050482: arachidonic acid secretion	9.65E-04
50	GO:0043572: plastid fission	9.65E-04
51	GO:0010371: regulation of gibberellin biosynthetic process	9.65E-04
52	GO:0006166: purine ribonucleoside salvage	9.65E-04
53	GO:0071484: cellular response to light intensity	9.65E-04
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.65E-04
55	GO:0006145: purine nucleobase catabolic process	9.65E-04
56	GO:0009909: regulation of flower development	1.11E-03
57	GO:0016117: carotenoid biosynthetic process	1.22E-03
58	GO:0006508: proteolysis	1.27E-03
59	GO:0010021: amylopectin biosynthetic process	1.28E-03
60	GO:0071585: detoxification of cadmium ion	1.28E-03
61	GO:0055114: oxidation-reduction process	1.55E-03
62	GO:0010117: photoprotection	1.63E-03
63	GO:0009904: chloroplast accumulation movement	1.63E-03
64	GO:0044209: AMP salvage	1.63E-03
65	GO:0015979: photosynthesis	1.64E-03
66	GO:0045454: cell redox homeostasis	1.76E-03
67	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.01E-03
68	GO:0006555: methionine metabolic process	2.01E-03
69	GO:0009903: chloroplast avoidance movement	2.41E-03
70	GO:0010189: vitamin E biosynthetic process	2.41E-03
71	GO:0010019: chloroplast-nucleus signaling pathway	2.41E-03
72	GO:0009648: photoperiodism	2.41E-03
73	GO:0019509: L-methionine salvage from methylthioadenosine	2.41E-03
74	GO:0010038: response to metal ion	2.83E-03
75	GO:0050790: regulation of catalytic activity	2.83E-03
76	GO:0006368: transcription elongation from RNA polymerase II promoter	2.83E-03
77	GO:0070370: cellular heat acclimation	2.83E-03
78	GO:0050821: protein stabilization	3.28E-03
79	GO:0009231: riboflavin biosynthetic process	3.28E-03
80	GO:0006102: isocitrate metabolic process	3.28E-03
81	GO:0016559: peroxisome fission	3.28E-03
82	GO:0006644: phospholipid metabolic process	3.28E-03
83	GO:0048564: photosystem I assembly	3.28E-03
84	GO:0030091: protein repair	3.28E-03
85	GO:0071482: cellular response to light stimulus	3.75E-03
86	GO:0015996: chlorophyll catabolic process	3.75E-03
87	GO:0009637: response to blue light	4.12E-03
88	GO:0034765: regulation of ion transmembrane transport	4.25E-03
89	GO:0010206: photosystem II repair	4.25E-03
90	GO:0034599: cellular response to oxidative stress	4.30E-03
91	GO:0010205: photoinhibition	4.76E-03
92	GO:0009638: phototropism	4.76E-03
93	GO:0009640: photomorphogenesis	5.30E-03
94	GO:0000103: sulfate assimilation	5.30E-03
95	GO:0009970: cellular response to sulfate starvation	5.30E-03
96	GO:0006995: cellular response to nitrogen starvation	5.30E-03
97	GO:0009644: response to high light intensity	5.73E-03
98	GO:0043085: positive regulation of catalytic activity	5.85E-03
99	GO:0006879: cellular iron ion homeostasis	5.85E-03
100	GO:0016485: protein processing	5.85E-03
101	GO:0009773: photosynthetic electron transport in photosystem I	5.85E-03
102	GO:0008285: negative regulation of cell proliferation	5.85E-03
103	GO:0035556: intracellular signal transduction	6.31E-03
104	GO:0009767: photosynthetic electron transport chain	7.03E-03
105	GO:0009785: blue light signaling pathway	7.03E-03
106	GO:0051603: proteolysis involved in cellular protein catabolic process	7.39E-03
107	GO:0007015: actin filament organization	7.64E-03
108	GO:0010020: chloroplast fission	7.64E-03
109	GO:0007031: peroxisome organization	8.27E-03
110	GO:0006071: glycerol metabolic process	8.93E-03
111	GO:0051017: actin filament bundle assembly	9.60E-03
112	GO:0019344: cysteine biosynthetic process	9.60E-03
113	GO:0009624: response to nematode	1.02E-02
114	GO:0010073: meristem maintenance	1.03E-02
115	GO:0051302: regulation of cell division	1.03E-02
116	GO:0006366: transcription from RNA polymerase II promoter	1.10E-02
117	GO:0010017: red or far-red light signaling pathway	1.17E-02
118	GO:0040007: growth	1.25E-02
119	GO:0010227: floral organ abscission	1.25E-02
120	GO:0006817: phosphate ion transport	1.32E-02
121	GO:0042335: cuticle development	1.48E-02
122	GO:0042391: regulation of membrane potential	1.48E-02
123	GO:0010118: stomatal movement	1.48E-02
124	GO:0006662: glycerol ether metabolic process	1.56E-02
125	GO:0010182: sugar mediated signaling pathway	1.56E-02
126	GO:0009741: response to brassinosteroid	1.56E-02
127	GO:0042752: regulation of circadian rhythm	1.64E-02
128	GO:0019252: starch biosynthetic process	1.73E-02
129	GO:0000302: response to reactive oxygen species	1.81E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.81E-02
131	GO:0009739: response to gibberellin	1.98E-02
132	GO:0030163: protein catabolic process	1.99E-02
133	GO:0006464: cellular protein modification process	2.07E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	2.07E-02
135	GO:0071805: potassium ion transmembrane transport	2.17E-02
136	GO:0010027: thylakoid membrane organization	2.35E-02
137	GO:0016126: sterol biosynthetic process	2.35E-02
138	GO:0006950: response to stress	2.64E-02
139	GO:0009409: response to cold	2.64E-02
140	GO:0045893: positive regulation of transcription, DNA-templated	2.79E-02
141	GO:0008219: cell death	2.84E-02
142	GO:0000160: phosphorelay signal transduction system	2.94E-02
143	GO:0006811: ion transport	3.05E-02
144	GO:0010218: response to far red light	3.05E-02
145	GO:0010043: response to zinc ion	3.15E-02
146	GO:0007568: aging	3.15E-02
147	GO:0009723: response to ethylene	3.16E-02
148	GO:0006865: amino acid transport	3.26E-02
149	GO:0006099: tricarboxylic acid cycle	3.47E-02
150	GO:0042542: response to hydrogen peroxide	3.92E-02
151	GO:0010114: response to red light	4.03E-02
152	GO:0045892: negative regulation of transcription, DNA-templated	4.11E-02
153	GO:0042538: hyperosmotic salinity response	4.73E-02
154	GO:0009751: response to salicylic acid	4.90E-02
155	GO:0006281: DNA repair	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
3	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
7	GO:0045436: lycopene beta cyclase activity	0.00E+00
8	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
9	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
10	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
11	GO:0050347: trans-octaprenyltranstransferase activity	1.62E-06
12	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.62E-06
13	GO:0004180: carboxypeptidase activity	5.99E-06
14	GO:0003913: DNA photolyase activity	5.99E-06
15	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.38E-05
16	GO:0001053: plastid sigma factor activity	2.56E-05
17	GO:0016987: sigma factor activity	2.56E-05
18	GO:0016783: sulfurtransferase activity	1.84E-04
19	GO:0051996: squalene synthase activity	1.84E-04
20	GO:0004328: formamidase activity	1.84E-04
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.84E-04
22	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.84E-04
23	GO:0035671: enone reductase activity	1.84E-04
24	GO:0046906: tetrapyrrole binding	1.84E-04
25	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.84E-04
26	GO:0008237: metallopeptidase activity	2.15E-04
27	GO:0000989: transcription factor activity, transcription factor binding	2.21E-04
28	GO:0019904: protein domain specific binding	3.60E-04
29	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.15E-04
30	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.15E-04
31	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	4.15E-04
32	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.15E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	4.15E-04
34	GO:0015173: aromatic amino acid transmembrane transporter activity	4.15E-04
35	GO:0009973: adenylyl-sulfate reductase activity	4.15E-04
36	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	4.15E-04
37	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	4.15E-04
38	GO:0004046: aminoacylase activity	4.15E-04
39	GO:0004557: alpha-galactosidase activity	6.76E-04
40	GO:0003935: GTP cyclohydrolase II activity	6.76E-04
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.76E-04
42	GO:0050307: sucrose-phosphate phosphatase activity	6.76E-04
43	GO:0004096: catalase activity	6.76E-04
44	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	6.76E-04
45	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.76E-04
46	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.76E-04
47	GO:0046524: sucrose-phosphate synthase activity	6.76E-04
48	GO:0004373: glycogen (starch) synthase activity	6.76E-04
49	GO:0032947: protein complex scaffold	6.76E-04
50	GO:0004848: ureidoglycolate hydrolase activity	6.76E-04
51	GO:0042802: identical protein binding	7.25E-04
52	GO:0004176: ATP-dependent peptidase activity	8.78E-04
53	GO:0003999: adenine phosphoribosyltransferase activity	9.65E-04
54	GO:0016851: magnesium chelatase activity	9.65E-04
55	GO:0004792: thiosulfate sulfurtransferase activity	9.65E-04
56	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.65E-04
57	GO:0009882: blue light photoreceptor activity	9.65E-04
58	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.65E-04
59	GO:0000254: C-4 methylsterol oxidase activity	9.65E-04
60	GO:0015175: neutral amino acid transmembrane transporter activity	9.65E-04
61	GO:0016887: ATPase activity	1.08E-03
62	GO:0009011: starch synthase activity	1.28E-03
63	GO:0010181: FMN binding	1.52E-03
64	GO:0004623: phospholipase A2 activity	1.63E-03
65	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.98E-03
66	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.01E-03
67	GO:0004709: MAP kinase kinase kinase activity	2.01E-03
68	GO:0000293: ferric-chelate reductase activity	2.01E-03
69	GO:0016157: sucrose synthase activity	2.41E-03
70	GO:0005242: inward rectifier potassium channel activity	2.41E-03
71	GO:0019899: enzyme binding	2.83E-03
72	GO:0009881: photoreceptor activity	2.83E-03
73	GO:0008236: serine-type peptidase activity	3.09E-03
74	GO:0030674: protein binding, bridging	3.28E-03
75	GO:0004222: metalloendopeptidase activity	3.59E-03
76	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.25E-03
77	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.03E-03
78	GO:0005315: inorganic phosphate transmembrane transporter activity	7.03E-03
79	GO:0031072: heat shock protein binding	7.03E-03
80	GO:0000155: phosphorelay sensor kinase activity	7.03E-03
81	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.14E-03
82	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.64E-03
83	GO:0016491: oxidoreductase activity	7.65E-03
84	GO:0051536: iron-sulfur cluster binding	9.60E-03
85	GO:0001046: core promoter sequence-specific DNA binding	9.60E-03
86	GO:0015035: protein disulfide oxidoreductase activity	1.05E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	1.25E-02
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.31E-02
89	GO:0047134: protein-disulfide reductase activity	1.40E-02
90	GO:0005249: voltage-gated potassium channel activity	1.48E-02
91	GO:0030551: cyclic nucleotide binding	1.48E-02
92	GO:0004527: exonuclease activity	1.56E-02
93	GO:0008080: N-acetyltransferase activity	1.56E-02
94	GO:0004791: thioredoxin-disulfide reductase activity	1.64E-02
95	GO:0005506: iron ion binding	1.65E-02
96	GO:0048038: quinone binding	1.81E-02
97	GO:0008270: zinc ion binding	1.87E-02
98	GO:0004197: cysteine-type endopeptidase activity	1.90E-02
99	GO:0016791: phosphatase activity	2.07E-02
100	GO:0005515: protein binding	2.19E-02
101	GO:0016168: chlorophyll binding	2.45E-02
102	GO:0004721: phosphoprotein phosphatase activity	2.64E-02
103	GO:0030247: polysaccharide binding	2.64E-02
104	GO:0000287: magnesium ion binding	2.68E-02
105	GO:0030145: manganese ion binding	3.15E-02
106	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.15E-02
107	GO:0050897: cobalt ion binding	3.15E-02
108	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.36E-02
109	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.58E-02
110	GO:0004185: serine-type carboxypeptidase activity	4.03E-02
111	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.15E-02
112	GO:0051537: 2 iron, 2 sulfur cluster binding	4.26E-02
113	GO:0015293: symporter activity	4.38E-02
114	GO:0005198: structural molecule activity	4.38E-02
115	GO:0051287: NAD binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.09E-14
2	GO:0009535: chloroplast thylakoid membrane	5.86E-06
3	GO:0031969: chloroplast membrane	3.06E-05
4	GO:0031972: chloroplast intermembrane space	1.84E-04
5	GO:0005777: peroxisome	4.12E-04
6	GO:0045254: pyruvate dehydrogenase complex	4.15E-04
7	GO:0010007: magnesium chelatase complex	6.76E-04
8	GO:0009570: chloroplast stroma	1.06E-03
9	GO:0016593: Cdc73/Paf1 complex	1.28E-03
10	GO:0009526: plastid envelope	1.28E-03
11	GO:0009706: chloroplast inner membrane	1.51E-03
12	GO:0010287: plastoglobule	1.88E-03
13	GO:0010319: stromule	2.23E-03
14	GO:0031982: vesicle	3.28E-03
15	GO:0009501: amyloplast	3.28E-03
16	GO:0009514: glyoxysome	3.75E-03
17	GO:0005779: integral component of peroxisomal membrane	3.75E-03
18	GO:0005884: actin filament	5.85E-03
19	GO:0005764: lysosome	7.64E-03
20	GO:0009534: chloroplast thylakoid	7.73E-03
21	GO:0009941: chloroplast envelope	9.75E-03
22	GO:0042651: thylakoid membrane	1.03E-02
23	GO:0009532: plastid stroma	1.10E-02
24	GO:0005773: vacuole	1.26E-02
25	GO:0009523: photosystem II	1.73E-02
26	GO:0005778: peroxisomal membrane	2.17E-02
27	GO:0009536: plastid	2.29E-02
28	GO:0009707: chloroplast outer membrane	2.84E-02
29	GO:0005739: mitochondrion	3.27E-02
30	GO:0009506: plasmodesma	3.73E-02
31	GO:0031977: thylakoid lumen	3.80E-02