co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G15750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051050: positive regulation of transport	0.00E+00
2	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
3	GO:0072321: chaperone-mediated protein transport	0.00E+00
4	GO:0071433: cell wall repair	0.00E+00
5	GO:0044843: cell cycle G1/S phase transition	0.00E+00
6	GO:0008612: peptidyl-lysine modification to peptidyl-hypusine	0.00E+00
7	GO:0071731: response to nitric oxide	0.00E+00
8	GO:1902184: negative regulation of shoot apical meristem development	0.00E+00
9	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
10	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
11	GO:0006412: translation	8.94E-22
12	GO:0006364: rRNA processing	1.72E-17
13	GO:0042254: ribosome biogenesis	3.88E-12
14	GO:0000470: maturation of LSU-rRNA	1.26E-06
15	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.07E-06
16	GO:0009553: embryo sac development	3.69E-06
17	GO:0000028: ribosomal small subunit assembly	5.41E-06
18	GO:0010162: seed dormancy process	1.94E-05
19	GO:0006626: protein targeting to mitochondrion	3.88E-05
20	GO:0000460: maturation of 5.8S rRNA	4.54E-05
21	GO:0042273: ribosomal large subunit biogenesis	4.54E-05
22	GO:0000027: ribosomal large subunit assembly	7.91E-05
23	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.45E-04
24	GO:0006169: adenosine salvage	2.57E-04
25	GO:0006407: rRNA export from nucleus	2.57E-04
26	GO:0031120: snRNA pseudouridine synthesis	2.57E-04
27	GO:0000469: cleavage involved in rRNA processing	2.57E-04
28	GO:0031118: rRNA pseudouridine synthesis	2.57E-04
29	GO:0030490: maturation of SSU-rRNA	2.57E-04
30	GO:0000494: box C/D snoRNA 3'-end processing	2.57E-04
31	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.57E-04
32	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.57E-04
33	GO:0043985: histone H4-R3 methylation	2.57E-04
34	GO:1990258: histone glutamine methylation	2.57E-04
35	GO:0006396: RNA processing	4.75E-04
36	GO:0009220: pyrimidine ribonucleotide biosynthetic process	5.68E-04
37	GO:0080009: mRNA methylation	5.68E-04
38	GO:0045041: protein import into mitochondrial intermembrane space	5.68E-04
39	GO:0034470: ncRNA processing	5.68E-04
40	GO:0048569: post-embryonic animal organ development	5.68E-04
41	GO:0009967: positive regulation of signal transduction	5.68E-04
42	GO:0006556: S-adenosylmethionine biosynthetic process	9.22E-04
43	GO:1902626: assembly of large subunit precursor of preribosome	9.22E-04
44	GO:0042256: mature ribosome assembly	9.22E-04
45	GO:0045039: protein import into mitochondrial inner membrane	9.22E-04
46	GO:0045604: regulation of epidermal cell differentiation	9.22E-04
47	GO:0009944: polarity specification of adaxial/abaxial axis	1.15E-03
48	GO:0030150: protein import into mitochondrial matrix	1.15E-03
49	GO:0051302: regulation of cell division	1.27E-03
50	GO:0009855: determination of bilateral symmetry	1.32E-03
51	GO:0051131: chaperone-mediated protein complex assembly	1.32E-03
52	GO:0006986: response to unfolded protein	1.32E-03
53	GO:0051085: chaperone mediated protein folding requiring cofactor	1.32E-03
54	GO:0007276: gamete generation	1.32E-03
55	GO:0006730: one-carbon metabolic process	1.52E-03
56	GO:0007005: mitochondrion organization	1.52E-03
57	GO:0009294: DNA mediated transformation	1.65E-03
58	GO:0071215: cellular response to abscisic acid stimulus	1.65E-03
59	GO:0044205: 'de novo' UMP biosynthetic process	1.76E-03
60	GO:0006479: protein methylation	1.76E-03
61	GO:1900864: mitochondrial RNA modification	1.76E-03
62	GO:0046345: abscisic acid catabolic process	1.76E-03
63	GO:0042274: ribosomal small subunit biogenesis	1.76E-03
64	GO:0009561: megagametogenesis	1.80E-03
65	GO:0010501: RNA secondary structure unwinding	2.10E-03
66	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.25E-03
67	GO:0044209: AMP salvage	2.25E-03
68	GO:0010375: stomatal complex patterning	2.25E-03
69	GO:0031167: rRNA methylation	2.25E-03
70	GO:0010197: polar nucleus fusion	2.26E-03
71	GO:0016569: covalent chromatin modification	2.58E-03
72	GO:0000741: karyogamy	2.77E-03
73	GO:0016554: cytidine to uridine editing	2.77E-03
74	GO:0000054: ribosomal subunit export from nucleus	3.33E-03
75	GO:0006458: 'de novo' protein folding	3.33E-03
76	GO:0048444: floral organ morphogenesis	3.33E-03
77	GO:0010077: maintenance of inflorescence meristem identity	3.33E-03
78	GO:0009955: adaxial/abaxial pattern specification	3.33E-03
79	GO:0042026: protein refolding	3.33E-03
80	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.93E-03
81	GO:0010374: stomatal complex development	3.93E-03
82	GO:0045995: regulation of embryonic development	3.93E-03
83	GO:0080186: developmental vegetative growth	3.93E-03
84	GO:0009396: folic acid-containing compound biosynthetic process	3.93E-03
85	GO:0042255: ribosome assembly	4.56E-03
86	GO:0001558: regulation of cell growth	5.22E-03
87	GO:0001510: RNA methylation	5.22E-03
88	GO:0009451: RNA modification	5.75E-03
89	GO:2000024: regulation of leaf development	5.92E-03
90	GO:0007338: single fertilization	5.92E-03
91	GO:0035999: tetrahydrofolate interconversion	6.64E-03
92	GO:1900865: chloroplast RNA modification	6.64E-03
93	GO:0030422: production of siRNA involved in RNA interference	7.40E-03
94	GO:0006259: DNA metabolic process	7.40E-03
95	GO:0006879: cellular iron ion homeostasis	8.19E-03
96	GO:0006913: nucleocytoplasmic transport	8.19E-03
97	GO:0010582: floral meristem determinacy	9.00E-03
98	GO:0010030: positive regulation of seed germination	1.16E-02
99	GO:0006334: nucleosome assembly	1.55E-02
100	GO:0061077: chaperone-mediated protein folding	1.55E-02
101	GO:0045892: negative regulation of transcription, DNA-templated	1.64E-02
102	GO:0016226: iron-sulfur cluster assembly	1.65E-02
103	GO:0009693: ethylene biosynthetic process	1.76E-02
104	GO:0006457: protein folding	1.79E-02
105	GO:0008033: tRNA processing	2.09E-02
106	GO:0000413: protein peptidyl-prolyl isomerization	2.09E-02
107	GO:0006606: protein import into nucleus	2.09E-02
108	GO:0009960: endosperm development	2.20E-02
109	GO:0048364: root development	2.21E-02
110	GO:0046686: response to cadmium ion	2.36E-02
111	GO:0048825: cotyledon development	2.43E-02
112	GO:0080156: mitochondrial mRNA modification	2.56E-02
113	GO:0006413: translational initiation	2.67E-02
114	GO:0016032: viral process	2.68E-02
115	GO:0032502: developmental process	2.68E-02
116	GO:0071281: cellular response to iron ion	2.80E-02
117	GO:0009567: double fertilization forming a zygote and endosperm	2.93E-02
118	GO:0009735: response to cytokinin	3.83E-02
119	GO:0016049: cell growth	3.87E-02
120	GO:0048527: lateral root development	4.45E-02
121	GO:0009793: embryo development ending in seed dormancy	4.53E-02
122	GO:0009853: photorespiration	4.75E-02
123	GO:0015031: protein transport	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0034038: deoxyhypusine synthase activity	0.00E+00
2	GO:0004152: dihydroorotate dehydrogenase activity	0.00E+00
3	GO:0050355: triphosphatase activity	0.00E+00
4	GO:0016018: cyclosporin A binding	0.00E+00
5	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	3.17E-29
7	GO:0003723: RNA binding	2.53E-20
8	GO:0000166: nucleotide binding	2.40E-10
9	GO:0030515: snoRNA binding	2.80E-08
10	GO:0019843: rRNA binding	4.69E-07
11	GO:0004407: histone deacetylase activity	2.45E-06
12	GO:0043021: ribonucleoprotein complex binding	3.07E-06
13	GO:0003729: mRNA binding	8.56E-06
14	GO:0008026: ATP-dependent helicase activity	6.19E-05
15	GO:0004001: adenosine kinase activity	2.57E-04
16	GO:1990259: histone-glutamine methyltransferase activity	2.57E-04
17	GO:0042134: rRNA primary transcript binding	2.57E-04
18	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.57E-04
19	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.57E-04
20	GO:0001055: RNA polymerase II activity	4.27E-04
21	GO:0036455: iron-sulfur transferase activity	5.68E-04
22	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.68E-04
23	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.68E-04
24	GO:0005078: MAP-kinase scaffold activity	5.68E-04
25	GO:0001054: RNA polymerase I activity	5.76E-04
26	GO:0044183: protein binding involved in protein folding	5.76E-04
27	GO:0004004: ATP-dependent RNA helicase activity	5.83E-04
28	GO:0001056: RNA polymerase III activity	6.59E-04
29	GO:0000175: 3'-5'-exoribonuclease activity	7.47E-04
30	GO:0050897: cobalt ion binding	7.97E-04
31	GO:0003746: translation elongation factor activity	8.93E-04
32	GO:0008649: rRNA methyltransferase activity	9.22E-04
33	GO:0004478: methionine adenosyltransferase activity	9.22E-04
34	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.22E-04
35	GO:0070181: small ribosomal subunit rRNA binding	9.22E-04
36	GO:0051087: chaperone binding	1.27E-03
37	GO:0043023: ribosomal large subunit binding	1.32E-03
38	GO:0008198: ferrous iron binding	2.25E-03
39	GO:0004527: exonuclease activity	2.26E-03
40	GO:0051082: unfolded protein binding	2.79E-03
41	GO:0008235: metalloexopeptidase activity	3.93E-03
42	GO:0043022: ribosome binding	4.56E-03
43	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.25E-03
44	GO:0003678: DNA helicase activity	5.92E-03
45	GO:0000049: tRNA binding	9.00E-03
46	GO:0051537: 2 iron, 2 sulfur cluster binding	9.29E-03
47	GO:0009982: pseudouridine synthase activity	9.85E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.00E-02
49	GO:0005528: FK506 binding	1.35E-02
50	GO:0005507: copper ion binding	2.06E-02
51	GO:0008536: Ran GTPase binding	2.20E-02
52	GO:0008080: N-acetyltransferase activity	2.20E-02
53	GO:0004519: endonuclease activity	2.33E-02
54	GO:0008565: protein transporter activity	2.48E-02
55	GO:0003743: translation initiation factor activity	3.34E-02
56	GO:0004721: phosphoprotein phosphatase activity	3.73E-02
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.87E-02
58	GO:0016787: hydrolase activity	3.99E-02
59	GO:0008168: methyltransferase activity	4.26E-02
60	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0036396: MIS complex	0.00E+00
4	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
5	GO:0005730: nucleolus	6.92E-48
6	GO:0005840: ribosome	2.52E-17
7	GO:0022625: cytosolic large ribosomal subunit	1.28E-15
8	GO:0022626: cytosolic ribosome	4.11E-14
9	GO:0032040: small-subunit processome	5.09E-13
10	GO:0022627: cytosolic small ribosomal subunit	1.36E-12
11	GO:0030687: preribosome, large subunit precursor	2.80E-08
12	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	6.72E-07
13	GO:0005759: mitochondrial matrix	1.04E-06
14	GO:0005829: cytosol	1.74E-06
15	GO:0005834: heterotrimeric G-protein complex	2.79E-06
16	GO:0070545: PeBoW complex	3.07E-06
17	GO:0015934: large ribosomal subunit	8.30E-05
18	GO:0031428: box C/D snoRNP complex	1.05E-04
19	GO:0015935: small ribosomal subunit	1.06E-04
20	GO:0005634: nucleus	1.94E-04
21	GO:0005743: mitochondrial inner membrane	2.17E-04
22	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	2.57E-04
23	GO:0030686: 90S preribosome	2.57E-04
24	GO:0005736: DNA-directed RNA polymerase I complex	3.60E-04
25	GO:0005666: DNA-directed RNA polymerase III complex	4.27E-04
26	GO:0015030: Cajal body	4.27E-04
27	GO:0005737: cytoplasm	4.32E-04
28	GO:0000418: DNA-directed RNA polymerase IV complex	4.99E-04
29	GO:0005665: DNA-directed RNA polymerase II, core complex	6.59E-04
30	GO:0005618: cell wall	1.03E-03
31	GO:0000419: DNA-directed RNA polymerase V complex	1.04E-03
32	GO:0009506: plasmodesma	1.08E-03
33	GO:0005758: mitochondrial intermembrane space	1.15E-03
34	GO:0031429: box H/ACA snoRNP complex	1.32E-03
35	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.80E-03
36	GO:0000178: exosome (RNase complex)	2.25E-03
37	GO:0005747: mitochondrial respiratory chain complex I	2.29E-03
38	GO:0005773: vacuole	2.31E-03
39	GO:0016363: nuclear matrix	3.33E-03
40	GO:0030529: intracellular ribonucleoprotein complex	4.03E-03
41	GO:0034399: nuclear periphery	4.56E-03
42	GO:0005739: mitochondrion	5.04E-03
43	GO:0005742: mitochondrial outer membrane translocase complex	5.22E-03
44	GO:0005763: mitochondrial small ribosomal subunit	5.92E-03
45	GO:0005852: eukaryotic translation initiation factor 3 complex	8.19E-03
46	GO:0019013: viral nucleocapsid	9.85E-03
47	GO:0005774: vacuolar membrane	1.44E-02
48	GO:0005654: nucleoplasm	2.02E-02
49	GO:0016592: mediator complex	2.68E-02