co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G15450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009661: chromoplast organization	0.00E+00
2	GO:0005997: xylulose metabolic process	0.00E+00
3	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
4	GO:0015813: L-glutamate transport	0.00E+00
5	GO:0098586: cellular response to virus	0.00E+00
6	GO:0090470: shoot organ boundary specification	0.00E+00
7	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
8	GO:0009304: tRNA transcription	0.00E+00
9	GO:0046677: response to antibiotic	0.00E+00
10	GO:0071483: cellular response to blue light	1.02E-07
11	GO:0015995: chlorophyll biosynthetic process	5.63E-07
12	GO:0009658: chloroplast organization	9.23E-07
13	GO:0080005: photosystem stoichiometry adjustment	1.45E-06
14	GO:2001141: regulation of RNA biosynthetic process	1.24E-05
15	GO:0016120: carotene biosynthetic process	3.73E-05
16	GO:0010236: plastoquinone biosynthetic process	3.73E-05
17	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.54E-05
18	GO:0010189: vitamin E biosynthetic process	7.74E-05
19	GO:0015798: myo-inositol transport	1.73E-04
20	GO:0071461: cellular response to redox state	1.73E-04
21	GO:0010362: negative regulation of anion channel activity by blue light	1.73E-04
22	GO:0046467: membrane lipid biosynthetic process	1.73E-04
23	GO:0031426: polycistronic mRNA processing	1.73E-04
24	GO:0071805: potassium ion transmembrane transport	1.91E-04
25	GO:0055114: oxidation-reduction process	1.96E-04
26	GO:0015979: photosynthesis	2.66E-04
27	GO:0018298: protein-chromophore linkage	3.22E-04
28	GO:0006352: DNA-templated transcription, initiation	3.31E-04
29	GO:0042548: regulation of photosynthesis, light reaction	3.92E-04
30	GO:0006898: receptor-mediated endocytosis	3.92E-04
31	GO:0000256: allantoin catabolic process	3.92E-04
32	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.92E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	3.92E-04
34	GO:0042550: photosystem I stabilization	3.92E-04
35	GO:0016122: xanthophyll metabolic process	3.92E-04
36	GO:0042754: negative regulation of circadian rhythm	3.92E-04
37	GO:0010343: singlet oxygen-mediated programmed cell death	3.92E-04
38	GO:0042853: L-alanine catabolic process	3.92E-04
39	GO:0046741: transport of virus in host, tissue to tissue	3.92E-04
40	GO:0009915: phloem sucrose loading	3.92E-04
41	GO:0005986: sucrose biosynthetic process	4.32E-04
42	GO:0007623: circadian rhythm	4.40E-04
43	GO:0010207: photosystem II assembly	4.87E-04
44	GO:0010136: ureide catabolic process	6.40E-04
45	GO:0071836: nectar secretion	6.40E-04
46	GO:0006696: ergosterol biosynthetic process	6.40E-04
47	GO:0044375: regulation of peroxisome size	6.40E-04
48	GO:0009644: response to high light intensity	6.68E-04
49	GO:0008299: isoprenoid biosynthetic process	7.39E-04
50	GO:0043572: plastid fission	9.13E-04
51	GO:0010371: regulation of gibberellin biosynthetic process	9.13E-04
52	GO:0071484: cellular response to light intensity	9.13E-04
53	GO:0015729: oxaloacetate transport	9.13E-04
54	GO:0010239: chloroplast mRNA processing	9.13E-04
55	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.13E-04
56	GO:0006145: purine nucleobase catabolic process	9.13E-04
57	GO:0016117: carotenoid biosynthetic process	1.12E-03
58	GO:0009902: chloroplast relocation	1.21E-03
59	GO:0010021: amylopectin biosynthetic process	1.21E-03
60	GO:0019676: ammonia assimilation cycle	1.21E-03
61	GO:0015743: malate transport	1.21E-03
62	GO:0015994: chlorophyll metabolic process	1.21E-03
63	GO:0071585: detoxification of cadmium ion	1.21E-03
64	GO:0009791: post-embryonic development	1.50E-03
65	GO:0071423: malate transmembrane transport	1.54E-03
66	GO:0010117: photoprotection	1.54E-03
67	GO:0009904: chloroplast accumulation movement	1.54E-03
68	GO:0000304: response to singlet oxygen	1.54E-03
69	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.89E-03
70	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.89E-03
71	GO:0009643: photosynthetic acclimation	1.89E-03
72	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.89E-03
73	GO:0006555: methionine metabolic process	1.89E-03
74	GO:0010190: cytochrome b6f complex assembly	1.89E-03
75	GO:0009903: chloroplast avoidance movement	2.27E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	2.27E-03
77	GO:0009648: photoperiodism	2.27E-03
78	GO:0019509: L-methionine salvage from methylthioadenosine	2.27E-03
79	GO:0010038: response to metal ion	2.67E-03
80	GO:0070370: cellular heat acclimation	2.67E-03
81	GO:0019375: galactolipid biosynthetic process	3.09E-03
82	GO:0050821: protein stabilization	3.09E-03
83	GO:0006102: isocitrate metabolic process	3.09E-03
84	GO:0016559: peroxisome fission	3.09E-03
85	GO:0048564: photosystem I assembly	3.09E-03
86	GO:0006508: proteolysis	3.23E-03
87	GO:0048574: long-day photoperiodism, flowering	3.54E-03
88	GO:0010100: negative regulation of photomorphogenesis	3.54E-03
89	GO:0009932: cell tip growth	3.54E-03
90	GO:0071482: cellular response to light stimulus	3.54E-03
91	GO:0009637: response to blue light	3.78E-03
92	GO:0034599: cellular response to oxidative stress	3.95E-03
93	GO:0034765: regulation of ion transmembrane transport	4.00E-03
94	GO:0048507: meristem development	4.00E-03
95	GO:0009821: alkaloid biosynthetic process	4.00E-03
96	GO:0010206: photosystem II repair	4.00E-03
97	GO:0010205: photoinhibition	4.49E-03
98	GO:0009638: phototropism	4.49E-03
99	GO:0045036: protein targeting to chloroplast	4.99E-03
100	GO:0009641: shade avoidance	4.99E-03
101	GO:0006259: DNA metabolic process	4.99E-03
102	GO:0051555: flavonol biosynthetic process	4.99E-03
103	GO:0009970: cellular response to sulfate starvation	4.99E-03
104	GO:0006995: cellular response to nitrogen starvation	4.99E-03
105	GO:0008285: negative regulation of cell proliferation	5.52E-03
106	GO:0009773: photosynthetic electron transport in photosystem I	5.52E-03
107	GO:0006265: DNA topological change	5.52E-03
108	GO:0043085: positive regulation of catalytic activity	5.52E-03
109	GO:0006813: potassium ion transport	6.55E-03
110	GO:0009767: photosynthetic electron transport chain	6.61E-03
111	GO:0044550: secondary metabolite biosynthetic process	6.90E-03
112	GO:0007015: actin filament organization	7.20E-03
113	GO:0010223: secondary shoot formation	7.20E-03
114	GO:0009266: response to temperature stimulus	7.20E-03
115	GO:0010020: chloroplast fission	7.20E-03
116	GO:0006096: glycolytic process	7.74E-03
117	GO:0007031: peroxisome organization	7.79E-03
118	GO:0042343: indole glucosinolate metabolic process	7.79E-03
119	GO:0045454: cell redox homeostasis	7.80E-03
120	GO:0006071: glycerol metabolic process	8.41E-03
121	GO:0046686: response to cadmium ion	8.80E-03
122	GO:0009624: response to nematode	9.33E-03
123	GO:0010073: meristem maintenance	9.69E-03
124	GO:0051302: regulation of cell division	9.69E-03
125	GO:0098542: defense response to other organism	1.03E-02
126	GO:0031408: oxylipin biosynthetic process	1.03E-02
127	GO:0016226: iron-sulfur cluster assembly	1.10E-02
128	GO:0010227: floral organ abscission	1.17E-02
129	GO:0009058: biosynthetic process	1.23E-02
130	GO:0009306: protein secretion	1.24E-02
131	GO:0006817: phosphate ion transport	1.24E-02
132	GO:0042391: regulation of membrane potential	1.39E-02
133	GO:0010118: stomatal movement	1.39E-02
134	GO:0006606: protein import into nucleus	1.39E-02
135	GO:0006662: glycerol ether metabolic process	1.47E-02
136	GO:0010182: sugar mediated signaling pathway	1.47E-02
137	GO:0009741: response to brassinosteroid	1.47E-02
138	GO:0006814: sodium ion transport	1.54E-02
139	GO:0042752: regulation of circadian rhythm	1.54E-02
140	GO:0007059: chromosome segregation	1.54E-02
141	GO:0019252: starch biosynthetic process	1.62E-02
142	GO:0010228: vegetative to reproductive phase transition of meristem	1.69E-02
143	GO:0000302: response to reactive oxygen species	1.70E-02
144	GO:0030163: protein catabolic process	1.87E-02
145	GO:0010468: regulation of gene expression	1.93E-02
146	GO:0010027: thylakoid membrane organization	2.21E-02
147	GO:0009816: defense response to bacterium, incompatible interaction	2.30E-02
148	GO:0045893: positive regulation of transcription, DNA-templated	2.51E-02
149	GO:0008219: cell death	2.67E-02
150	GO:0000160: phosphorelay signal transduction system	2.77E-02
151	GO:0006811: ion transport	2.87E-02
152	GO:0010218: response to far red light	2.87E-02
153	GO:0010043: response to zinc ion	2.96E-02
154	GO:0007568: aging	2.96E-02
155	GO:0009853: photorespiration	3.16E-02
156	GO:0009867: jasmonic acid mediated signaling pathway	3.16E-02
157	GO:0006099: tricarboxylic acid cycle	3.27E-02
158	GO:0046777: protein autophosphorylation	3.32E-02
159	GO:0006631: fatty acid metabolic process	3.58E-02
160	GO:0042542: response to hydrogen peroxide	3.68E-02
161	GO:0009640: photomorphogenesis	3.79E-02
162	GO:0010114: response to red light	3.79E-02
163	GO:0031347: regulation of defense response	4.34E-02
164	GO:0042538: hyperosmotic salinity response	4.45E-02
165	GO:0009737: response to abscisic acid	4.50E-02
166	GO:0006281: DNA repair	4.57E-02
167	GO:0009809: lignin biosynthetic process	4.68E-02
168	GO:0009753: response to jasmonic acid	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
2	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
10	GO:0009976: tocopherol cyclase activity	0.00E+00
11	GO:0050347: trans-octaprenyltranstransferase activity	1.45E-06
12	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.45E-06
13	GO:0004180: carboxypeptidase activity	5.37E-06
14	GO:0003913: DNA photolyase activity	5.37E-06
15	GO:0008237: metallopeptidase activity	9.48E-06
16	GO:0016851: magnesium chelatase activity	1.24E-05
17	GO:0001053: plastid sigma factor activity	2.30E-05
18	GO:0016987: sigma factor activity	2.30E-05
19	GO:0004176: ATP-dependent peptidase activity	4.54E-05
20	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.73E-04
21	GO:0051996: squalene synthase activity	1.73E-04
22	GO:0046481: digalactosyldiacylglycerol synthase activity	1.73E-04
23	GO:0004328: formamidase activity	1.73E-04
24	GO:0030941: chloroplast targeting sequence binding	1.73E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.73E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.73E-04
27	GO:0035671: enone reductase activity	1.73E-04
28	GO:0046480: galactolipid galactosyltransferase activity	1.73E-04
29	GO:0046906: tetrapyrrole binding	1.73E-04
30	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	1.73E-04
31	GO:0004856: xylulokinase activity	1.73E-04
32	GO:0016783: sulfurtransferase activity	1.73E-04
33	GO:0004222: metalloendopeptidase activity	3.66E-04
34	GO:0004046: aminoacylase activity	3.92E-04
35	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.92E-04
36	GO:0015367: oxoglutarate:malate antiporter activity	3.92E-04
37	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.92E-04
38	GO:0005366: myo-inositol:proton symporter activity	3.92E-04
39	GO:0033201: alpha-1,4-glucan synthase activity	3.92E-04
40	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.40E-04
41	GO:0050307: sucrose-phosphate phosphatase activity	6.40E-04
42	GO:0004557: alpha-galactosidase activity	6.40E-04
43	GO:0004096: catalase activity	6.40E-04
44	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
45	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.40E-04
46	GO:0046524: sucrose-phosphate synthase activity	6.40E-04
47	GO:0004373: glycogen (starch) synthase activity	6.40E-04
48	GO:0032947: protein complex scaffold	6.40E-04
49	GO:0004848: ureidoglycolate hydrolase activity	6.40E-04
50	GO:0004148: dihydrolipoyl dehydrogenase activity	6.40E-04
51	GO:0015079: potassium ion transmembrane transporter activity	7.39E-04
52	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.79E-04
53	GO:0004792: thiosulfate sulfurtransferase activity	9.13E-04
54	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	9.13E-04
55	GO:0009882: blue light photoreceptor activity	9.13E-04
56	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.13E-04
57	GO:0048027: mRNA 5'-UTR binding	9.13E-04
58	GO:0015131: oxaloacetate transmembrane transporter activity	9.13E-04
59	GO:0004416: hydroxyacylglutathione hydrolase activity	9.13E-04
60	GO:0035250: UDP-galactosyltransferase activity	9.13E-04
61	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.13E-04
62	GO:0016887: ATPase activity	9.32E-04
63	GO:0051861: glycolipid binding	1.21E-03
64	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.21E-03
65	GO:0008453: alanine-glyoxylate transaminase activity	1.21E-03
66	GO:0005313: L-glutamate transmembrane transporter activity	1.21E-03
67	GO:0009011: starch synthase activity	1.21E-03
68	GO:0010181: FMN binding	1.40E-03
69	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.54E-03
70	GO:0051538: 3 iron, 4 sulfur cluster binding	1.54E-03
71	GO:0000293: ferric-chelate reductase activity	1.89E-03
72	GO:0004709: MAP kinase kinase kinase activity	1.89E-03
73	GO:0016157: sucrose synthase activity	2.27E-03
74	GO:0005242: inward rectifier potassium channel activity	2.27E-03
75	GO:0019899: enzyme binding	2.67E-03
76	GO:0009881: photoreceptor activity	2.67E-03
77	GO:0015140: malate transmembrane transporter activity	2.67E-03
78	GO:0008236: serine-type peptidase activity	2.84E-03
79	GO:0050897: cobalt ion binding	3.45E-03
80	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.54E-03
81	GO:0042802: identical protein binding	3.68E-03
82	GO:0005506: iron ion binding	3.95E-03
83	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.00E-03
84	GO:0000989: transcription factor activity, transcription factor binding	4.00E-03
85	GO:0016844: strictosidine synthase activity	4.49E-03
86	GO:0001054: RNA polymerase I activity	5.52E-03
87	GO:0001056: RNA polymerase III activity	6.06E-03
88	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.61E-03
89	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
90	GO:0031072: heat shock protein binding	6.61E-03
91	GO:0000155: phosphorelay sensor kinase activity	6.61E-03
92	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.60E-03
93	GO:0051536: iron-sulfur cluster binding	9.03E-03
94	GO:0022891: substrate-specific transmembrane transporter activity	1.17E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.20E-02
96	GO:0047134: protein-disulfide reductase activity	1.32E-02
97	GO:0005249: voltage-gated potassium channel activity	1.39E-02
98	GO:0030551: cyclic nucleotide binding	1.39E-02
99	GO:0008565: protein transporter activity	1.40E-02
100	GO:0008080: N-acetyltransferase activity	1.47E-02
101	GO:0004791: thioredoxin-disulfide reductase activity	1.54E-02
102	GO:0016853: isomerase activity	1.54E-02
103	GO:0048038: quinone binding	1.70E-02
104	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.87E-02
105	GO:0016791: phosphatase activity	1.95E-02
106	GO:0016491: oxidoreductase activity	2.23E-02
107	GO:0016168: chlorophyll binding	2.30E-02
108	GO:0000287: magnesium ion binding	2.46E-02
109	GO:0004721: phosphoprotein phosphatase activity	2.48E-02
110	GO:0020037: heme binding	2.92E-02
111	GO:0030145: manganese ion binding	2.96E-02
112	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.16E-02
113	GO:0019825: oxygen binding	3.27E-02
114	GO:0016757: transferase activity, transferring glycosyl groups	3.33E-02
115	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.37E-02
116	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
117	GO:0015293: symporter activity	4.12E-02
118	GO:0005198: structural molecule activity	4.12E-02
119	GO:0051287: NAD binding	4.34E-02
120	GO:0005515: protein binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.87E-25
2	GO:0009535: chloroplast thylakoid membrane	6.27E-10
3	GO:0009706: chloroplast inner membrane	1.45E-05
4	GO:0042651: thylakoid membrane	3.89E-05
5	GO:0005777: peroxisome	6.04E-05
6	GO:0009534: chloroplast thylakoid	6.96E-05
7	GO:0009941: chloroplast envelope	8.78E-05
8	GO:0031972: chloroplast intermembrane space	1.73E-04
9	GO:0031969: chloroplast membrane	2.06E-04
10	GO:0009570: chloroplast stroma	2.81E-04
11	GO:0009707: chloroplast outer membrane	3.22E-04
12	GO:0045254: pyruvate dehydrogenase complex	3.92E-04
13	GO:0010007: magnesium chelatase complex	6.40E-04
14	GO:0033281: TAT protein transport complex	6.40E-04
15	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.21E-03
16	GO:0009536: plastid	1.61E-03
17	GO:0010287: plastoglobule	1.68E-03
18	GO:0010319: stromule	2.05E-03
19	GO:0005759: mitochondrial matrix	2.41E-03
20	GO:0031359: integral component of chloroplast outer membrane	2.67E-03
21	GO:0009501: amyloplast	3.09E-03
22	GO:0031982: vesicle	3.09E-03
23	GO:0009514: glyoxysome	3.54E-03
24	GO:0005779: integral component of peroxisomal membrane	3.54E-03
25	GO:0042644: chloroplast nucleoid	4.00E-03
26	GO:0005736: DNA-directed RNA polymerase I complex	4.00E-03
27	GO:0005666: DNA-directed RNA polymerase III complex	4.49E-03
28	GO:0005773: vacuole	1.05E-02
29	GO:0005739: mitochondrion	1.33E-02
30	GO:0009523: photosystem II	1.62E-02
31	GO:0005778: peroxisomal membrane	2.04E-02
32	GO:0009295: nucleoid	2.04E-02
33	GO:0031977: thylakoid lumen	3.58E-02