Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G14680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0090470: shoot organ boundary specification0.00E+00
4GO:0032928: regulation of superoxide anion generation0.00E+00
5GO:0016576: histone dephosphorylation0.00E+00
6GO:0048856: anatomical structure development0.00E+00
7GO:0009661: chromoplast organization0.00E+00
8GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
9GO:0006720: isoprenoid metabolic process0.00E+00
10GO:0033317: pantothenate biosynthetic process from valine0.00E+00
11GO:0032780: negative regulation of ATPase activity0.00E+00
12GO:0006482: protein demethylation0.00E+00
13GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
14GO:0071000: response to magnetism0.00E+00
15GO:0010190: cytochrome b6f complex assembly3.61E-06
16GO:0010343: singlet oxygen-mediated programmed cell death6.68E-06
17GO:0080005: photosystem stoichiometry adjustment6.68E-06
18GO:0010117: photoprotection1.40E-04
19GO:0016120: carotene biosynthetic process1.40E-04
20GO:0033365: protein localization to organelle2.01E-04
21GO:0055114: oxidation-reduction process2.24E-04
22GO:0009658: chloroplast organization2.51E-04
23GO:0071266: 'de novo' L-methionine biosynthetic process3.86E-04
24GO:0046900: tetrahydrofolylpolyglutamate metabolic process3.86E-04
25GO:0071806: protein transmembrane transport3.86E-04
26GO:0019346: transsulfuration3.86E-04
27GO:0072387: flavin adenine dinucleotide metabolic process3.86E-04
28GO:0071461: cellular response to redox state3.86E-04
29GO:0006430: lysyl-tRNA aminoacylation3.86E-04
30GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.86E-04
31GO:0006567: threonine catabolic process3.86E-04
32GO:0016487: farnesol metabolic process3.86E-04
33GO:0016031: tRNA import into mitochondrion3.86E-04
34GO:0019343: cysteine biosynthetic process via cystathionine3.86E-04
35GO:0010362: negative regulation of anion channel activity by blue light3.86E-04
36GO:0010118: stomatal movement4.33E-04
37GO:1900426: positive regulation of defense response to bacterium7.60E-04
38GO:0009638: phototropism7.60E-04
39GO:0048314: embryo sac morphogenesis8.38E-04
40GO:0010617: circadian regulation of calcium ion oscillation8.38E-04
41GO:2000030: regulation of response to red or far red light8.38E-04
42GO:0000256: allantoin catabolic process8.38E-04
43GO:0099402: plant organ development8.38E-04
44GO:2000071: regulation of defense response by callose deposition8.38E-04
45GO:1904143: positive regulation of carotenoid biosynthetic process8.38E-04
46GO:0035335: peptidyl-tyrosine dephosphorylation8.38E-04
47GO:0016122: xanthophyll metabolic process8.38E-04
48GO:0080185: effector dependent induction by symbiont of host immune response8.38E-04
49GO:1901529: positive regulation of anion channel activity8.38E-04
50GO:0009767: photosynthetic electron transport chain1.32E-03
51GO:0010136: ureide catabolic process1.36E-03
52GO:0006013: mannose metabolic process1.36E-03
53GO:0009150: purine ribonucleotide metabolic process1.36E-03
54GO:1901672: positive regulation of systemic acquired resistance1.36E-03
55GO:0015940: pantothenate biosynthetic process1.36E-03
56GO:0006696: ergosterol biosynthetic process1.36E-03
57GO:0071836: nectar secretion1.36E-03
58GO:0045739: positive regulation of DNA repair1.36E-03
59GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.36E-03
60GO:1902448: positive regulation of shade avoidance1.36E-03
61GO:0009853: photorespiration1.88E-03
62GO:0006145: purine nucleobase catabolic process1.96E-03
63GO:1901332: negative regulation of lateral root development1.96E-03
64GO:0050482: arachidonic acid secretion1.96E-03
65GO:0006882: cellular zinc ion homeostasis1.96E-03
66GO:2001141: regulation of RNA biosynthetic process1.96E-03
67GO:0010371: regulation of gibberellin biosynthetic process1.96E-03
68GO:0046653: tetrahydrofolate metabolic process1.96E-03
69GO:0007017: microtubule-based process2.27E-03
70GO:0006546: glycine catabolic process2.63E-03
71GO:0006552: leucine catabolic process2.63E-03
72GO:0051567: histone H3-K9 methylation2.63E-03
73GO:1902347: response to strigolactone2.63E-03
74GO:0009902: chloroplast relocation2.63E-03
75GO:0034613: cellular protein localization2.63E-03
76GO:0010021: amylopectin biosynthetic process2.63E-03
77GO:0006808: regulation of nitrogen utilization2.63E-03
78GO:0070534: protein K63-linked ubiquitination2.63E-03
79GO:0015743: malate transport2.63E-03
80GO:0006545: glycine biosynthetic process2.63E-03
81GO:0042274: ribosomal small subunit biogenesis2.63E-03
82GO:0019464: glycine decarboxylation via glycine cleavage system2.63E-03
83GO:2000022: regulation of jasmonic acid mediated signaling pathway2.73E-03
84GO:0016226: iron-sulfur cluster assembly2.73E-03
85GO:0031347: regulation of defense response3.31E-03
86GO:0046283: anthocyanin-containing compound metabolic process3.37E-03
87GO:0045038: protein import into chloroplast thylakoid membrane3.37E-03
88GO:0000304: response to singlet oxygen3.37E-03
89GO:0016117: carotenoid biosynthetic process3.51E-03
90GO:1901371: regulation of leaf morphogenesis4.17E-03
91GO:0007035: vacuolar acidification4.17E-03
92GO:0016458: gene silencing4.17E-03
93GO:0006301: postreplication repair4.17E-03
94GO:0010304: PSII associated light-harvesting complex II catabolic process4.17E-03
95GO:0016070: RNA metabolic process4.17E-03
96GO:0006555: methionine metabolic process4.17E-03
97GO:0060918: auxin transport4.17E-03
98GO:0031053: primary miRNA processing4.17E-03
99GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.02E-03
100GO:0010016: shoot system morphogenesis5.02E-03
101GO:0010189: vitamin E biosynthetic process5.02E-03
102GO:0010019: chloroplast-nucleus signaling pathway5.02E-03
103GO:0010310: regulation of hydrogen peroxide metabolic process5.02E-03
104GO:0019509: L-methionine salvage from methylthioadenosine5.02E-03
105GO:0030026: cellular manganese ion homeostasis5.94E-03
106GO:0006400: tRNA modification5.94E-03
107GO:0009396: folic acid-containing compound biosynthetic process5.94E-03
108GO:0051510: regulation of unidimensional cell growth5.94E-03
109GO:0010038: response to metal ion5.94E-03
110GO:0050790: regulation of catalytic activity5.94E-03
111GO:1900056: negative regulation of leaf senescence5.94E-03
112GO:0071805: potassium ion transmembrane transport6.51E-03
113GO:0006508: proteolysis6.87E-03
114GO:0009787: regulation of abscisic acid-activated signaling pathway6.90E-03
115GO:0006605: protein targeting6.90E-03
116GO:0009704: de-etiolation6.90E-03
117GO:0050821: protein stabilization6.90E-03
118GO:0006102: isocitrate metabolic process6.90E-03
119GO:0006644: phospholipid metabolic process6.90E-03
120GO:0048564: photosystem I assembly6.90E-03
121GO:0045292: mRNA cis splicing, via spliceosome6.90E-03
122GO:0044030: regulation of DNA methylation7.92E-03
123GO:0071482: cellular response to light stimulus7.92E-03
124GO:0019430: removal of superoxide radicals7.92E-03
125GO:0046916: cellular transition metal ion homeostasis8.99E-03
126GO:0098656: anion transmembrane transport8.99E-03
127GO:0009821: alkaloid biosynthetic process8.99E-03
128GO:0018298: protein-chromophore linkage9.56E-03
129GO:0010380: regulation of chlorophyll biosynthetic process1.01E-02
130GO:0035999: tetrahydrofolate interconversion1.01E-02
131GO:0006811: ion transport1.06E-02
132GO:0010043: response to zinc ion1.11E-02
133GO:0007568: aging1.11E-02
134GO:0006535: cysteine biosynthetic process from serine1.13E-02
135GO:0000103: sulfate assimilation1.13E-02
136GO:0009688: abscisic acid biosynthetic process1.13E-02
137GO:0045036: protein targeting to chloroplast1.13E-02
138GO:0055062: phosphate ion homeostasis1.13E-02
139GO:0051555: flavonol biosynthetic process1.13E-02
140GO:0009637: response to blue light1.21E-02
141GO:0043085: positive regulation of catalytic activity1.25E-02
142GO:0009682: induced systemic resistance1.25E-02
143GO:0008285: negative regulation of cell proliferation1.25E-02
144GO:1903507: negative regulation of nucleic acid-templated transcription1.25E-02
145GO:0006879: cellular iron ion homeostasis1.25E-02
146GO:0006352: DNA-templated transcription, initiation1.25E-02
147GO:0006816: calcium ion transport1.25E-02
148GO:0006790: sulfur compound metabolic process1.38E-02
149GO:0009785: blue light signaling pathway1.51E-02
150GO:0006807: nitrogen compound metabolic process1.51E-02
151GO:0009718: anthocyanin-containing compound biosynthetic process1.51E-02
152GO:0010075: regulation of meristem growth1.51E-02
153GO:0005986: sucrose biosynthetic process1.51E-02
154GO:0009640: photomorphogenesis1.57E-02
155GO:0048440: carpel development1.64E-02
156GO:0006541: glutamine metabolic process1.64E-02
157GO:0010207: photosystem II assembly1.64E-02
158GO:0009644: response to high light intensity1.70E-02
159GO:0090351: seedling development1.78E-02
160GO:0006071: glycerol metabolic process1.92E-02
161GO:0000162: tryptophan biosynthetic process1.92E-02
162GO:2000377: regulation of reactive oxygen species metabolic process2.07E-02
163GO:0006487: protein N-linked glycosylation2.07E-02
164GO:0019344: cysteine biosynthetic process2.07E-02
165GO:0009793: embryo development ending in seed dormancy2.19E-02
166GO:0006418: tRNA aminoacylation for protein translation2.22E-02
167GO:0010073: meristem maintenance2.22E-02
168GO:0006306: DNA methylation2.37E-02
169GO:0006366: transcription from RNA polymerase II promoter2.37E-02
170GO:0061077: chaperone-mediated protein folding2.37E-02
171GO:0051321: meiotic cell cycle2.37E-02
172GO:0006730: one-carbon metabolic process2.53E-02
173GO:0007005: mitochondrion organization2.53E-02
174GO:0048366: leaf development2.56E-02
175GO:0010227: floral organ abscission2.69E-02
176GO:0006817: phosphate ion transport2.86E-02
177GO:0046777: protein autophosphorylation2.97E-02
178GO:0042335: cuticle development3.20E-02
179GO:0015991: ATP hydrolysis coupled proton transport3.20E-02
180GO:0006662: glycerol ether metabolic process3.38E-02
181GO:0006520: cellular amino acid metabolic process3.38E-02
182GO:0006814: sodium ion transport3.55E-02
183GO:0042752: regulation of circadian rhythm3.55E-02
184GO:0009646: response to absence of light3.55E-02
185GO:0009791: post-embryonic development3.74E-02
186GO:0019252: starch biosynthetic process3.74E-02
187GO:0008654: phospholipid biosynthetic process3.74E-02
188GO:0009851: auxin biosynthetic process3.74E-02
189GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.92E-02
190GO:0002229: defense response to oomycetes3.92E-02
191GO:0009058: biosynthetic process3.98E-02
192GO:0032259: methylation4.19E-02
193GO:0030163: protein catabolic process4.30E-02
194GO:0016579: protein deubiquitination4.89E-02
RankGO TermAdjusted P value
1GO:0052671: geranylgeraniol kinase activity0.00E+00
2GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
3GO:0051723: protein methylesterase activity0.00E+00
4GO:0008170: N-methyltransferase activity0.00E+00
5GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0042030: ATPase inhibitor activity0.00E+00
8GO:0052670: geraniol kinase activity0.00E+00
9GO:0052668: farnesol kinase activity0.00E+00
10GO:0004592: pantoate-beta-alanine ligase activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0050342: tocopherol O-methyltransferase activity0.00E+00
13GO:0009008: DNA-methyltransferase activity0.00E+00
14GO:0045436: lycopene beta cyclase activity0.00E+00
15GO:0010307: acetylglutamate kinase regulator activity0.00E+00
16GO:0030946: protein tyrosine phosphatase activity, metal-dependent0.00E+00
17GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
18GO:0004848: ureidoglycolate hydrolase activity6.00E-08
19GO:0016491: oxidoreductase activity1.37E-05
20GO:0004180: carboxypeptidase activity2.33E-05
21GO:0009882: blue light photoreceptor activity5.10E-05
22GO:0016783: sulfurtransferase activity3.86E-04
23GO:0008242: omega peptidase activity3.86E-04
24GO:0004121: cystathionine beta-lyase activity3.86E-04
25GO:0051996: squalene synthase activity3.86E-04
26GO:0008732: L-allo-threonine aldolase activity3.86E-04
27GO:0030941: chloroplast targeting sequence binding3.86E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.86E-04
29GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.86E-04
30GO:0004485: methylcrotonoyl-CoA carboxylase activity3.86E-04
31GO:0004123: cystathionine gamma-lyase activity3.86E-04
32GO:0046906: tetrapyrrole binding3.86E-04
33GO:0033984: indole-3-glycerol-phosphate lyase activity3.86E-04
34GO:0004824: lysine-tRNA ligase activity3.86E-04
35GO:0015085: calcium ion transmembrane transporter activity3.86E-04
36GO:0004793: threonine aldolase activity3.86E-04
37GO:0048038: quinone binding6.27E-04
38GO:0071949: FAD binding6.44E-04
39GO:0034722: gamma-glutamyl-peptidase activity8.38E-04
40GO:0004450: isocitrate dehydrogenase (NADP+) activity8.38E-04
41GO:0004046: aminoacylase activity8.38E-04
42GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.38E-04
43GO:0015367: oxoglutarate:malate antiporter activity8.38E-04
44GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity8.38E-04
45GO:0033201: alpha-1,4-glucan synthase activity8.38E-04
46GO:0004477: methenyltetrahydrofolate cyclohydrolase activity8.38E-04
47GO:0008237: metallopeptidase activity8.62E-04
48GO:0004129: cytochrome-c oxidase activity1.02E-03
49GO:0015266: protein channel activity1.32E-03
50GO:0005315: inorganic phosphate transmembrane transporter activity1.32E-03
51GO:0004373: glycogen (starch) synthase activity1.36E-03
52GO:0003962: cystathionine gamma-synthase activity1.36E-03
53GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.36E-03
54GO:0032947: protein complex scaffold1.36E-03
55GO:0004075: biotin carboxylase activity1.36E-03
56GO:0004557: alpha-galactosidase activity1.36E-03
57GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.36E-03
58GO:0046524: sucrose-phosphate synthase activity1.36E-03
59GO:0004792: thiosulfate sulfurtransferase activity1.96E-03
60GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.96E-03
61GO:0016851: magnesium chelatase activity1.96E-03
62GO:0000339: RNA cap binding1.96E-03
63GO:0047627: adenylylsulfatase activity1.96E-03
64GO:0009001: serine O-acetyltransferase activity1.96E-03
65GO:0000254: C-4 methylsterol oxidase activity1.96E-03
66GO:0004375: glycine dehydrogenase (decarboxylating) activity1.96E-03
67GO:0004176: ATP-dependent peptidase activity2.49E-03
68GO:0015368: calcium:cation antiporter activity2.63E-03
69GO:0001053: plastid sigma factor activity2.63E-03
70GO:0004834: tryptophan synthase activity2.63E-03
71GO:0051861: glycolipid binding2.63E-03
72GO:0015369: calcium:proton antiporter activity2.63E-03
73GO:0016987: sigma factor activity2.63E-03
74GO:0009011: starch synthase activity2.63E-03
75GO:0004623: phospholipase A2 activity3.37E-03
76GO:0016407: acetyltransferase activity3.37E-03
77GO:0008080: N-acetyltransferase activity4.09E-03
78GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity4.17E-03
79GO:0000293: ferric-chelate reductase activity4.17E-03
80GO:0004784: superoxide dismutase activity4.17E-03
81GO:0015271: outward rectifier potassium channel activity4.17E-03
82GO:0004605: phosphatidate cytidylyltransferase activity4.17E-03
83GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.02E-03
84GO:0004559: alpha-mannosidase activity5.02E-03
85GO:0016157: sucrose synthase activity5.02E-03
86GO:0019899: enzyme binding5.94E-03
87GO:0016621: cinnamoyl-CoA reductase activity5.94E-03
88GO:0005267: potassium channel activity7.92E-03
89GO:0015078: hydrogen ion transmembrane transporter activity7.92E-03
90GO:0046914: transition metal ion binding7.92E-03
91GO:0008889: glycerophosphodiester phosphodiesterase activity8.99E-03
92GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.99E-03
93GO:0008236: serine-type peptidase activity9.08E-03
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.56E-03
95GO:0016844: strictosidine synthase activity1.01E-02
96GO:0004222: metalloendopeptidase activity1.06E-02
97GO:0046961: proton-transporting ATPase activity, rotational mechanism1.25E-02
98GO:0031072: heat shock protein binding1.51E-02
99GO:0000155: phosphorelay sensor kinase activity1.51E-02
100GO:0042802: identical protein binding1.63E-02
101GO:0001046: core promoter sequence-specific DNA binding2.07E-02
102GO:0003714: transcription corepressor activity2.07E-02
103GO:0051536: iron-sulfur cluster binding2.07E-02
104GO:0005528: FK506 binding2.07E-02
105GO:0015079: potassium ion transmembrane transporter activity2.22E-02
106GO:0005515: protein binding2.24E-02
107GO:0003777: microtubule motor activity2.35E-02
108GO:0031625: ubiquitin protein ligase binding2.35E-02
109GO:0016887: ATPase activity2.43E-02
110GO:0008514: organic anion transmembrane transporter activity2.86E-02
111GO:0061630: ubiquitin protein ligase activity2.91E-02
112GO:0051082: unfolded protein binding3.02E-02
113GO:0047134: protein-disulfide reductase activity3.03E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.03E-02
115GO:0003713: transcription coactivator activity3.38E-02
116GO:0050662: coenzyme binding3.55E-02
117GO:0010181: FMN binding3.55E-02
118GO:0004791: thioredoxin-disulfide reductase activity3.55E-02
119GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.88E-02
120GO:0004843: thiol-dependent ubiquitin-specific protease activity3.92E-02
121GO:0004197: cysteine-type endopeptidase activity4.11E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.30E-02
123GO:0003924: GTPase activity4.42E-02
124GO:0016787: hydrolase activity4.53E-02
125GO:0008483: transaminase activity4.69E-02
126GO:0016413: O-acetyltransferase activity4.89E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.73E-23
2GO:0031969: chloroplast membrane9.74E-06
3GO:0009535: chloroplast thylakoid membrane3.38E-05
4GO:0030286: dynein complex9.01E-05
5GO:0005845: mRNA cap binding complex3.86E-04
6GO:0031972: chloroplast intermembrane space3.86E-04
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.44E-04
8GO:0005846: nuclear cap binding complex8.38E-04
9GO:0080085: signal recognition particle, chloroplast targeting8.38E-04
10GO:0005747: mitochondrial respiratory chain complex I8.91E-04
11GO:0016605: PML body1.36E-03
12GO:0009528: plastid inner membrane1.36E-03
13GO:0005875: microtubule associated complex1.85E-03
14GO:0009536: plastid1.95E-03
15GO:0005960: glycine cleavage complex1.96E-03
16GO:0005773: vacuole2.23E-03
17GO:0042651: thylakoid membrane2.27E-03
18GO:0045271: respiratory chain complex I2.27E-03
19GO:0009517: PSII associated light-harvesting complex II2.63E-03
20GO:0033179: proton-transporting V-type ATPase, V0 domain2.63E-03
21GO:0009527: plastid outer membrane2.63E-03
22GO:0031372: UBC13-MMS2 complex2.63E-03
23GO:0005744: mitochondrial inner membrane presequence translocase complex3.24E-03
24GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.37E-03
25GO:0031966: mitochondrial membrane3.47E-03
26GO:0009941: chloroplast envelope3.68E-03
27GO:0009840: chloroplastic endopeptidase Clp complex5.02E-03
28GO:0031359: integral component of chloroplast outer membrane5.94E-03
29GO:0009706: chloroplast inner membrane5.96E-03
30GO:0009501: amyloplast6.90E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.92E-03
32GO:0046930: pore complex7.92E-03
33GO:0009570: chloroplast stroma9.52E-03
34GO:0016604: nuclear body1.01E-02
35GO:0005759: mitochondrial matrix1.06E-02
36GO:0009534: chloroplast thylakoid1.28E-02
37GO:0005764: lysosome1.64E-02
38GO:0009532: plastid stroma2.37E-02
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Gene type



Gene DE type