co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G14410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0090042: tubulin deacetylation	0.00E+00
12	GO:0006114: glycerol biosynthetic process	0.00E+00
13	GO:1905177: tracheary element differentiation	0.00E+00
14	GO:0071474: cellular hyperosmotic response	0.00E+00
15	GO:0015979: photosynthesis	4.49E-16
16	GO:0010027: thylakoid membrane organization	1.14E-13
17	GO:0032544: plastid translation	3.13E-09
18	GO:0009773: photosynthetic electron transport in photosystem I	1.68E-06
19	GO:0006412: translation	2.43E-06
20	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.68E-06
21	GO:0061077: chaperone-mediated protein folding	1.34E-05
22	GO:0006000: fructose metabolic process	2.33E-05
23	GO:0009658: chloroplast organization	3.97E-05
24	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.10E-05
25	GO:0015994: chlorophyll metabolic process	9.01E-05
26	GO:0015995: chlorophyll biosynthetic process	1.53E-04
27	GO:0009735: response to cytokinin	1.59E-04
28	GO:0010190: cytochrome b6f complex assembly	2.01E-04
29	GO:0042254: ribosome biogenesis	2.61E-04
30	GO:0009409: response to cold	2.69E-04
31	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.86E-04
32	GO:0000476: maturation of 4.5S rRNA	3.86E-04
33	GO:0000967: rRNA 5'-end processing	3.86E-04
34	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.86E-04
35	GO:0043953: protein transport by the Tat complex	3.86E-04
36	GO:0010480: microsporocyte differentiation	3.86E-04
37	GO:0000481: maturation of 5S rRNA	3.86E-04
38	GO:0065002: intracellular protein transmembrane transport	3.86E-04
39	GO:0043686: co-translational protein modification	3.86E-04
40	GO:0043007: maintenance of rDNA	3.86E-04
41	GO:1902458: positive regulation of stomatal opening	3.86E-04
42	GO:0010028: xanthophyll cycle	3.86E-04
43	GO:0034337: RNA folding	3.86E-04
44	GO:0010450: inflorescence meristem growth	3.86E-04
45	GO:0006002: fructose 6-phosphate metabolic process	5.37E-04
46	GO:0018026: peptidyl-lysine monomethylation	8.38E-04
47	GO:0016122: xanthophyll metabolic process	8.38E-04
48	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.38E-04
49	GO:0006521: regulation of cellular amino acid metabolic process	8.38E-04
50	GO:0051262: protein tetramerization	8.38E-04
51	GO:0034470: ncRNA processing	8.38E-04
52	GO:0019684: photosynthesis, light reaction	1.02E-03
53	GO:0005983: starch catabolic process	1.16E-03
54	GO:0016311: dephosphorylation	1.30E-03
55	GO:0006094: gluconeogenesis	1.32E-03
56	GO:0005986: sucrose biosynthetic process	1.32E-03
57	GO:0048281: inflorescence morphogenesis	1.36E-03
58	GO:0090391: granum assembly	1.36E-03
59	GO:0034051: negative regulation of plant-type hypersensitive response	1.36E-03
60	GO:0010623: programmed cell death involved in cell development	1.36E-03
61	GO:0016050: vesicle organization	1.36E-03
62	GO:0045165: cell fate commitment	1.36E-03
63	GO:0010020: chloroplast fission	1.48E-03
64	GO:0010306: rhamnogalacturonan II biosynthetic process	1.96E-03
65	GO:0010731: protein glutathionylation	1.96E-03
66	GO:1901332: negative regulation of lateral root development	1.96E-03
67	GO:0010148: transpiration	1.96E-03
68	GO:0007231: osmosensory signaling pathway	1.96E-03
69	GO:0009944: polarity specification of adaxial/abaxial axis	2.06E-03
70	GO:0009768: photosynthesis, light harvesting in photosystem I	2.27E-03
71	GO:0051322: anaphase	2.63E-03
72	GO:0019464: glycine decarboxylation via glycine cleavage system	2.63E-03
73	GO:0006109: regulation of carbohydrate metabolic process	2.63E-03
74	GO:0045727: positive regulation of translation	2.63E-03
75	GO:0033500: carbohydrate homeostasis	2.63E-03
76	GO:0006546: glycine catabolic process	2.63E-03
77	GO:0006552: leucine catabolic process	2.63E-03
78	GO:0010508: positive regulation of autophagy	2.63E-03
79	GO:0010021: amylopectin biosynthetic process	2.63E-03
80	GO:0006808: regulation of nitrogen utilization	2.63E-03
81	GO:0015976: carbon utilization	2.63E-03
82	GO:0010158: abaxial cell fate specification	3.37E-03
83	GO:0006465: signal peptide processing	3.37E-03
84	GO:0000304: response to singlet oxygen	3.37E-03
85	GO:0045038: protein import into chloroplast thylakoid membrane	3.37E-03
86	GO:0031365: N-terminal protein amino acid modification	3.37E-03
87	GO:1902183: regulation of shoot apical meristem development	3.37E-03
88	GO:0042793: transcription from plastid promoter	4.17E-03
89	GO:0003006: developmental process involved in reproduction	4.17E-03
90	GO:0042549: photosystem II stabilization	4.17E-03
91	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.17E-03
92	GO:0009955: adaxial/abaxial pattern specification	5.02E-03
93	GO:0042026: protein refolding	5.02E-03
94	GO:0006458: 'de novo' protein folding	5.02E-03
95	GO:1901259: chloroplast rRNA processing	5.02E-03
96	GO:0048437: floral organ development	5.94E-03
97	GO:0070370: cellular heat acclimation	5.94E-03
98	GO:0010196: nonphotochemical quenching	5.94E-03
99	GO:0009645: response to low light intensity stimulus	5.94E-03
100	GO:0022904: respiratory electron transport chain	5.94E-03
101	GO:0010103: stomatal complex morphogenesis	5.94E-03
102	GO:0005978: glycogen biosynthetic process	6.90E-03
103	GO:0006353: DNA-templated transcription, termination	6.90E-03
104	GO:0032508: DNA duplex unwinding	6.90E-03
105	GO:2000070: regulation of response to water deprivation	6.90E-03
106	GO:0000105: histidine biosynthetic process	6.90E-03
107	GO:0016559: peroxisome fission	6.90E-03
108	GO:0015996: chlorophyll catabolic process	7.92E-03
109	GO:0001558: regulation of cell growth	7.92E-03
110	GO:0007186: G-protein coupled receptor signaling pathway	7.92E-03
111	GO:0009657: plastid organization	7.92E-03
112	GO:0010093: specification of floral organ identity	7.92E-03
113	GO:0006810: transport	8.40E-03
114	GO:0010206: photosystem II repair	8.99E-03
115	GO:2000024: regulation of leaf development	8.99E-03
116	GO:0048507: meristem development	8.99E-03
117	GO:0009817: defense response to fungus, incompatible interaction	9.56E-03
118	GO:0018298: protein-chromophore linkage	9.56E-03
119	GO:0009790: embryo development	9.68E-03
120	GO:0006779: porphyrin-containing compound biosynthetic process	1.01E-02
121	GO:0005982: starch metabolic process	1.01E-02
122	GO:0042742: defense response to bacterium	1.09E-02
123	GO:0006782: protoporphyrinogen IX biosynthetic process	1.13E-02
124	GO:0031627: telomeric loop formation	1.13E-02
125	GO:0006816: calcium ion transport	1.25E-02
126	GO:0009089: lysine biosynthetic process via diaminopimelate	1.25E-02
127	GO:0009073: aromatic amino acid family biosynthetic process	1.25E-02
128	GO:0043085: positive regulation of catalytic activity	1.25E-02
129	GO:1903507: negative regulation of nucleic acid-templated transcription	1.25E-02
130	GO:0006415: translational termination	1.25E-02
131	GO:0000272: polysaccharide catabolic process	1.25E-02
132	GO:0009750: response to fructose	1.25E-02
133	GO:0018119: peptidyl-cysteine S-nitrosylation	1.25E-02
134	GO:0048229: gametophyte development	1.25E-02
135	GO:0010015: root morphogenesis	1.25E-02
136	GO:0045037: protein import into chloroplast stroma	1.38E-02
137	GO:0010582: floral meristem determinacy	1.38E-02
138	GO:0071365: cellular response to auxin stimulus	1.38E-02
139	GO:0006631: fatty acid metabolic process	1.45E-02
140	GO:0010075: regulation of meristem growth	1.51E-02
141	GO:0048467: gynoecium development	1.64E-02
142	GO:0010207: photosystem II assembly	1.64E-02
143	GO:0009933: meristem structural organization	1.64E-02
144	GO:0019253: reductive pentose-phosphate cycle	1.64E-02
145	GO:0009266: response to temperature stimulus	1.64E-02
146	GO:0009934: regulation of meristem structural organization	1.64E-02
147	GO:0005985: sucrose metabolic process	1.78E-02
148	GO:0070588: calcium ion transmembrane transport	1.78E-02
149	GO:0000162: tryptophan biosynthetic process	1.92E-02
150	GO:0006636: unsaturated fatty acid biosynthetic process	1.92E-02
151	GO:0006289: nucleotide-excision repair	2.07E-02
152	GO:0006364: rRNA processing	2.12E-02
153	GO:0016575: histone deacetylation	2.22E-02
154	GO:0007017: microtubule-based process	2.22E-02
155	GO:0051302: regulation of cell division	2.22E-02
156	GO:0019915: lipid storage	2.37E-02
157	GO:0031408: oxylipin biosynthetic process	2.37E-02
158	GO:0043086: negative regulation of catalytic activity	2.51E-02
159	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.53E-02
160	GO:0019748: secondary metabolic process	2.53E-02
161	GO:0009686: gibberellin biosynthetic process	2.69E-02
162	GO:0071369: cellular response to ethylene stimulus	2.69E-02
163	GO:0001944: vasculature development	2.69E-02
164	GO:0080167: response to karrikin	2.73E-02
165	GO:0009561: megagametogenesis	2.86E-02
166	GO:0010089: xylem development	2.86E-02
167	GO:0048653: anther development	3.20E-02
168	GO:0042631: cellular response to water deprivation	3.20E-02
169	GO:0006520: cellular amino acid metabolic process	3.38E-02
170	GO:0010154: fruit development	3.38E-02
171	GO:0006662: glycerol ether metabolic process	3.38E-02
172	GO:0010182: sugar mediated signaling pathway	3.38E-02
173	GO:0048868: pollen tube development	3.38E-02
174	GO:0009646: response to absence of light	3.55E-02
175	GO:0019252: starch biosynthetic process	3.74E-02
176	GO:0006869: lipid transport	3.83E-02
177	GO:0071554: cell wall organization or biogenesis	3.92E-02
178	GO:0032502: developmental process	4.11E-02
179	GO:1901657: glycosyl compound metabolic process	4.30E-02
180	GO:0009567: double fertilization forming a zygote and endosperm	4.49E-02
181	GO:0006633: fatty acid biosynthetic process	4.73E-02
182	GO:0000910: cytokinesis	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0051721: protein phosphatase 2A binding	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
13	GO:0043014: alpha-tubulin binding	0.00E+00
14	GO:0048039: ubiquinone binding	0.00E+00
15	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
16	GO:0009899: ent-kaurene synthase activity	0.00E+00
17	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
18	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
19	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
20	GO:0019843: rRNA binding	1.20E-12
21	GO:0005528: FK506 binding	2.22E-07
22	GO:0003735: structural constituent of ribosome	3.94E-06
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.25E-06
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.68E-06
25	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.01E-05
26	GO:0005227: calcium activated cation channel activity	3.86E-04
27	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.86E-04
28	GO:0050308: sugar-phosphatase activity	3.86E-04
29	GO:0019203: carbohydrate phosphatase activity	3.86E-04
30	GO:0042586: peptide deformylase activity	3.86E-04
31	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.86E-04
32	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.38E-04
33	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.38E-04
34	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.38E-04
35	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.38E-04
36	GO:0047746: chlorophyllase activity	8.38E-04
37	GO:0042389: omega-3 fatty acid desaturase activity	8.38E-04
38	GO:0016868: intramolecular transferase activity, phosphotransferases	8.38E-04
39	GO:0010297: heteropolysaccharide binding	8.38E-04
40	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.38E-04
41	GO:0044183: protein binding involved in protein folding	1.02E-03
42	GO:0051082: unfolded protein binding	1.12E-03
43	GO:0031072: heat shock protein binding	1.32E-03
44	GO:0043169: cation binding	1.36E-03
45	GO:0017150: tRNA dihydrouridine synthase activity	1.36E-03
46	GO:0005504: fatty acid binding	1.36E-03
47	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.36E-03
48	GO:0031409: pigment binding	1.85E-03
49	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.96E-03
50	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.96E-03
51	GO:0048487: beta-tubulin binding	1.96E-03
52	GO:0016149: translation release factor activity, codon specific	1.96E-03
53	GO:0016851: magnesium chelatase activity	1.96E-03
54	GO:0043023: ribosomal large subunit binding	1.96E-03
55	GO:0004857: enzyme inhibitor activity	2.06E-03
56	GO:0005525: GTP binding	2.33E-03
57	GO:0004045: aminoacyl-tRNA hydrolase activity	2.63E-03
58	GO:0080032: methyl jasmonate esterase activity	2.63E-03
59	GO:0045430: chalcone isomerase activity	2.63E-03
60	GO:0019199: transmembrane receptor protein kinase activity	2.63E-03
61	GO:0042277: peptide binding	2.63E-03
62	GO:0016279: protein-lysine N-methyltransferase activity	2.63E-03
63	GO:0043621: protein self-association	2.87E-03
64	GO:0003924: GTPase activity	3.37E-03
65	GO:2001070: starch binding	4.17E-03
66	GO:0080030: methyl indole-3-acetate esterase activity	4.17E-03
67	GO:0005261: cation channel activity	5.02E-03
68	GO:0051920: peroxiredoxin activity	5.02E-03
69	GO:0048038: quinone binding	5.05E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	6.90E-03
71	GO:0016209: antioxidant activity	6.90E-03
72	GO:0016168: chlorophyll binding	7.73E-03
73	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	7.92E-03
74	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.92E-03
75	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.99E-03
76	GO:0003747: translation release factor activity	8.99E-03
77	GO:0008047: enzyme activator activity	1.13E-02
78	GO:0003691: double-stranded telomeric DNA binding	1.25E-02
79	GO:0008017: microtubule binding	1.27E-02
80	GO:0003993: acid phosphatase activity	1.27E-02
81	GO:0009055: electron carrier activity	1.40E-02
82	GO:0004565: beta-galactosidase activity	1.51E-02
83	GO:0004089: carbonate dehydratase activity	1.51E-02
84	GO:0005262: calcium channel activity	1.51E-02
85	GO:0003723: RNA binding	1.55E-02
86	GO:0008266: poly(U) RNA binding	1.64E-02
87	GO:0016787: hydrolase activity	1.87E-02
88	GO:0000287: magnesium ion binding	2.04E-02
89	GO:0004407: histone deacetylase activity	2.07E-02
90	GO:0003714: transcription corepressor activity	2.07E-02
91	GO:0033612: receptor serine/threonine kinase binding	2.37E-02
92	GO:0005509: calcium ion binding	2.68E-02
93	GO:0030570: pectate lyase activity	2.69E-02
94	GO:0003756: protein disulfide isomerase activity	2.86E-02
95	GO:0047134: protein-disulfide reductase activity	3.03E-02
96	GO:0001085: RNA polymerase II transcription factor binding	3.38E-02
97	GO:0050662: coenzyme binding	3.55E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	3.55E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.30E-02
100	GO:0008483: transaminase activity	4.69E-02
101	GO:0005200: structural constituent of cytoskeleton	4.69E-02
102	GO:0016413: O-acetyltransferase activity	4.89E-02
103	GO:0016597: amino acid binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	2.13E-64
6	GO:0009534: chloroplast thylakoid	9.48E-41
7	GO:0009570: chloroplast stroma	1.03E-38
8	GO:0009535: chloroplast thylakoid membrane	6.92E-38
9	GO:0009941: chloroplast envelope	9.70E-26
10	GO:0009543: chloroplast thylakoid lumen	1.22E-18
11	GO:0009579: thylakoid	2.10E-18
12	GO:0031977: thylakoid lumen	4.65E-12
13	GO:0030095: chloroplast photosystem II	1.23E-09
14	GO:0005840: ribosome	1.32E-09
15	GO:0009538: photosystem I reaction center	1.59E-09
16	GO:0010287: plastoglobule	1.95E-07
17	GO:0009654: photosystem II oxygen evolving complex	2.97E-07
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.27E-07
19	GO:0019898: extrinsic component of membrane	2.34E-06
20	GO:0010319: stromule	5.50E-06
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.68E-06
22	GO:0009295: nucleoid	9.25E-05
23	GO:0009508: plastid chromosome	9.60E-05
24	GO:0009782: photosystem I antenna complex	3.86E-04
25	GO:0009515: granal stacked thylakoid	3.86E-04
26	GO:0005787: signal peptidase complex	3.86E-04
27	GO:0031361: integral component of thylakoid membrane	3.86E-04
28	GO:0009706: chloroplast inner membrane	1.12E-03
29	GO:0009528: plastid inner membrane	1.36E-03
30	GO:0033281: TAT protein transport complex	1.36E-03
31	GO:0010007: magnesium chelatase complex	1.36E-03
32	GO:0009707: chloroplast outer membrane	1.39E-03
33	GO:0030076: light-harvesting complex	1.66E-03
34	GO:0009536: plastid	1.95E-03
35	GO:0005960: glycine cleavage complex	1.96E-03
36	GO:0009532: plastid stroma	2.49E-03
37	GO:0009527: plastid outer membrane	2.63E-03
38	GO:0048046: apoplast	4.33E-03
39	GO:0009522: photosystem I	4.40E-03
40	GO:0009840: chloroplastic endopeptidase Clp complex	5.02E-03
41	GO:0016272: prefoldin complex	5.02E-03
42	GO:0005874: microtubule	6.62E-03
43	GO:0031305: integral component of mitochondrial inner membrane	6.90E-03
44	GO:0009501: amyloplast	6.90E-03
45	GO:0031969: chloroplast membrane	6.98E-03
46	GO:0000783: nuclear telomere cap complex	7.92E-03
47	GO:0045298: tubulin complex	8.99E-03
48	GO:0005763: mitochondrial small ribosomal subunit	8.99E-03
49	GO:0015934: large ribosomal subunit	1.11E-02
50	GO:0055028: cortical microtubule	1.13E-02
51	GO:0005740: mitochondrial envelope	1.13E-02
52	GO:0032040: small-subunit processome	1.38E-02
53	GO:0009574: preprophase band	1.51E-02
54	GO:0043234: protein complex	1.92E-02
55	GO:0042651: thylakoid membrane	2.22E-02
56	GO:0015935: small ribosomal subunit	2.37E-02
57	GO:0009523: photosystem II	3.74E-02