co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G14390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045740: positive regulation of DNA replication	0.00E+00
2	GO:0048870: cell motility	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0010343: singlet oxygen-mediated programmed cell death	3.72E-07
6	GO:0006567: threonine catabolic process	8.25E-05
7	GO:0072387: flavin adenine dinucleotide metabolic process	8.25E-05
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.97E-04
9	GO:1901529: positive regulation of anion channel activity	1.97E-04
10	GO:2000071: regulation of defense response by callose deposition	1.97E-04
11	GO:0010617: circadian regulation of calcium ion oscillation	1.97E-04
12	GO:0007163: establishment or maintenance of cell polarity	1.97E-04
13	GO:0099402: plant organ development	1.97E-04
14	GO:0019441: tryptophan catabolic process to kynurenine	1.97E-04
15	GO:2000377: regulation of reactive oxygen species metabolic process	2.48E-04
16	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.29E-04
17	GO:1902448: positive regulation of shade avoidance	3.29E-04
18	GO:1901672: positive regulation of systemic acquired resistance	3.29E-04
19	GO:0043617: cellular response to sucrose starvation	3.29E-04
20	GO:0010118: stomatal movement	4.61E-04
21	GO:0035067: negative regulation of histone acetylation	4.75E-04
22	GO:0009399: nitrogen fixation	4.75E-04
23	GO:0006516: glycoprotein catabolic process	4.75E-04
24	GO:1901332: negative regulation of lateral root development	4.75E-04
25	GO:0006882: cellular zinc ion homeostasis	4.75E-04
26	GO:0009646: response to absence of light	5.32E-04
27	GO:0006542: glutamine biosynthetic process	6.32E-04
28	GO:0070534: protein K63-linked ubiquitination	6.32E-04
29	GO:0006545: glycine biosynthetic process	6.32E-04
30	GO:0071249: cellular response to nitrate	6.32E-04
31	GO:0051567: histone H3-K9 methylation	6.32E-04
32	GO:0006749: glutathione metabolic process	6.32E-04
33	GO:0031507: heterochromatin assembly	6.32E-04
34	GO:1902347: response to strigolactone	6.32E-04
35	GO:0034613: cellular protein localization	6.32E-04
36	GO:0010375: stomatal complex patterning	8.00E-04
37	GO:0000304: response to singlet oxygen	8.00E-04
38	GO:0030041: actin filament polymerization	8.00E-04
39	GO:0010117: photoprotection	8.00E-04
40	GO:0046283: anthocyanin-containing compound metabolic process	8.00E-04
41	GO:0006301: postreplication repair	9.77E-04
42	GO:0016070: RNA metabolic process	9.77E-04
43	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	9.77E-04
44	GO:0031053: primary miRNA processing	9.77E-04
45	GO:1901371: regulation of leaf morphogenesis	9.77E-04
46	GO:0060918: auxin transport	9.77E-04
47	GO:0016458: gene silencing	9.77E-04
48	GO:0010310: regulation of hydrogen peroxide metabolic process	1.16E-03
49	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.16E-03
50	GO:0010016: shoot system morphogenesis	1.16E-03
51	GO:0048527: lateral root development	1.28E-03
52	GO:0007050: cell cycle arrest	1.36E-03
53	GO:0000082: G1/S transition of mitotic cell cycle	1.36E-03
54	GO:0030026: cellular manganese ion homeostasis	1.36E-03
55	GO:0051510: regulation of unidimensional cell growth	1.36E-03
56	GO:0045010: actin nucleation	1.57E-03
57	GO:0045292: mRNA cis splicing, via spliceosome	1.57E-03
58	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.57E-03
59	GO:0009704: de-etiolation	1.57E-03
60	GO:0000902: cell morphogenesis	2.02E-03
61	GO:0015780: nucleotide-sugar transport	2.02E-03
62	GO:1900426: positive regulation of defense response to bacterium	2.26E-03
63	GO:0009638: phototropism	2.26E-03
64	GO:0006325: chromatin organization	2.51E-03
65	GO:0055062: phosphate ion homeostasis	2.51E-03
66	GO:0006378: mRNA polyadenylation	2.77E-03
67	GO:0006816: calcium ion transport	2.77E-03
68	GO:0009682: induced systemic resistance	2.77E-03
69	GO:0048367: shoot system development	2.92E-03
70	GO:0010152: pollen maturation	3.03E-03
71	GO:2000028: regulation of photoperiodism, flowering	3.31E-03
72	GO:0010075: regulation of meristem growth	3.31E-03
73	GO:0010102: lateral root morphogenesis	3.31E-03
74	GO:0009785: blue light signaling pathway	3.31E-03
75	GO:0006306: DNA methylation	5.12E-03
76	GO:0016226: iron-sulfur cluster assembly	5.45E-03
77	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.45E-03
78	GO:0048443: stamen development	6.13E-03
79	GO:0080022: primary root development	6.83E-03
80	GO:0006342: chromatin silencing	7.20E-03
81	GO:0006520: cellular amino acid metabolic process	7.20E-03
82	GO:0042752: regulation of circadian rhythm	7.57E-03
83	GO:0009791: post-embryonic development	7.95E-03
84	GO:0002229: defense response to oomycetes	8.33E-03
85	GO:0010090: trichome morphogenesis	9.12E-03
86	GO:0016579: protein deubiquitination	1.04E-02
87	GO:0048366: leaf development	1.07E-02
88	GO:0042128: nitrate assimilation	1.17E-02
89	GO:0018298: protein-chromophore linkage	1.30E-02
90	GO:0010311: lateral root formation	1.35E-02
91	GO:0009407: toxin catabolic process	1.39E-02
92	GO:0010218: response to far red light	1.39E-02
93	GO:0009631: cold acclimation	1.44E-02
94	GO:0009637: response to blue light	1.54E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	1.54E-02
96	GO:0032259: methylation	1.59E-02
97	GO:0010114: response to red light	1.84E-02
98	GO:0009744: response to sucrose	1.84E-02
99	GO:0009640: photomorphogenesis	1.84E-02
100	GO:0009644: response to high light intensity	1.95E-02
101	GO:0008643: carbohydrate transport	1.95E-02
102	GO:0009636: response to toxic substance	2.00E-02
103	GO:0031347: regulation of defense response	2.11E-02
104	GO:0006417: regulation of translation	2.45E-02
105	GO:0009620: response to fungus	2.74E-02
106	GO:0016569: covalent chromatin modification	2.80E-02
107	GO:0009416: response to light stimulus	2.95E-02
108	GO:0000398: mRNA splicing, via spliceosome	3.24E-02
109	GO:0009737: response to abscisic acid	3.66E-02
110	GO:0042744: hydrogen peroxide catabolic process	3.76E-02
111	GO:0006511: ubiquitin-dependent protein catabolic process	4.00E-02
112	GO:0006633: fatty acid biosynthetic process	4.04E-02
113	GO:0007623: circadian rhythm	4.32E-02
114	GO:0010150: leaf senescence	4.32E-02
115	GO:0009451: RNA modification	4.39E-02
116	GO:0006470: protein dephosphorylation	4.75E-02
117	GO:0010468: regulation of gene expression	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
2	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
3	GO:0009008: DNA-methyltransferase activity	0.00E+00
4	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
5	GO:0008170: N-methyltransferase activity	0.00E+00
6	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
7	GO:0004560: alpha-L-fucosidase activity	8.25E-05
8	GO:0015085: calcium ion transmembrane transporter activity	8.25E-05
9	GO:0004793: threonine aldolase activity	8.25E-05
10	GO:0019707: protein-cysteine S-acyltransferase activity	8.25E-05
11	GO:0008732: L-allo-threonine aldolase activity	8.25E-05
12	GO:0004061: arylformamidase activity	1.97E-04
13	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	3.29E-04
14	GO:0004848: ureidoglycolate hydrolase activity	3.29E-04
15	GO:0032403: protein complex binding	3.29E-04
16	GO:0022857: transmembrane transporter activity	3.55E-04
17	GO:0009882: blue light photoreceptor activity	4.75E-04
18	GO:0016656: monodehydroascorbate reductase (NADH) activity	4.75E-04
19	GO:0000339: RNA cap binding	4.75E-04
20	GO:0015368: calcium:cation antiporter activity	6.32E-04
21	GO:0010011: auxin binding	6.32E-04
22	GO:0015369: calcium:proton antiporter activity	6.32E-04
23	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	6.32E-04
24	GO:0004356: glutamate-ammonia ligase activity	8.00E-04
25	GO:0016407: acetyltransferase activity	8.00E-04
26	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	9.77E-04
27	GO:0004806: triglyceride lipase activity	1.01E-03
28	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.16E-03
29	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.36E-03
30	GO:0008143: poly(A) binding	1.36E-03
31	GO:0035064: methylated histone binding	1.57E-03
32	GO:0071949: FAD binding	2.02E-03
33	GO:0001055: RNA polymerase II activity	2.26E-03
34	GO:0047617: acyl-CoA hydrolase activity	2.26E-03
35	GO:0008047: enzyme activator activity	2.51E-03
36	GO:0016787: hydrolase activity	2.56E-03
37	GO:0031625: ubiquitin protein ligase binding	2.66E-03
38	GO:0001054: RNA polymerase I activity	2.77E-03
39	GO:0004129: cytochrome-c oxidase activity	2.77E-03
40	GO:0001056: RNA polymerase III activity	3.03E-03
41	GO:0000976: transcription regulatory region sequence-specific DNA binding	3.03E-03
42	GO:0004842: ubiquitin-protein transferase activity	5.15E-03
43	GO:0042802: identical protein binding	7.43E-03
44	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.33E-03
45	GO:0008168: methyltransferase activity	8.71E-03
46	GO:0005515: protein binding	1.13E-02
47	GO:0061630: ubiquitin protein ligase activity	1.18E-02
48	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.39E-02
49	GO:0004364: glutathione transferase activity	1.79E-02
50	GO:0051287: NAD binding	2.11E-02
51	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.28E-02
52	GO:0003723: RNA binding	2.40E-02
53	GO:0051082: unfolded protein binding	2.93E-02
54	GO:0004386: helicase activity	3.11E-02
55	GO:0016829: lyase activity	3.63E-02
56	GO:0015297: antiporter activity	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0005845: mRNA cap binding complex	8.25E-05
2	GO:0005846: nuclear cap binding complex	1.97E-04
3	GO:0016605: PML body	3.29E-04
4	GO:0005849: mRNA cleavage factor complex	4.75E-04
5	GO:0031372: UBC13-MMS2 complex	6.32E-04
6	GO:0031209: SCAR complex	9.77E-04
7	GO:0005677: chromatin silencing complex	1.79E-03
8	GO:0016604: nuclear body	2.26E-03
9	GO:0005737: cytoplasm	3.27E-03
10	GO:0005654: nucleoplasm	4.14E-03
11	GO:0000419: DNA-directed RNA polymerase V complex	4.18E-03
12	GO:0042651: thylakoid membrane	4.80E-03
13	GO:0005759: mitochondrial matrix	5.32E-03
14	GO:0000785: chromatin	8.73E-03
15	GO:0071944: cell periphery	9.12E-03
16	GO:0005778: peroxisomal membrane	9.94E-03
17	GO:0005856: cytoskeleton	2.00E-02
18	GO:0016607: nuclear speck	2.62E-02
19	GO:0005777: peroxisome	3.39E-02
20	GO:0005773: vacuole	3.85E-02
21	GO:0009705: plant-type vacuole membrane	4.32E-02
22	GO:0005615: extracellular space	4.67E-02