Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13930

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061635: regulation of protein complex stability0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0006114: glycerol biosynthetic process0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
13GO:0015979: photosynthesis1.82E-14
14GO:0009768: photosynthesis, light harvesting in photosystem I2.75E-11
15GO:0018298: protein-chromophore linkage2.21E-10
16GO:0090391: granum assembly3.35E-08
17GO:0009645: response to low light intensity stimulus5.28E-08
18GO:0009644: response to high light intensity7.05E-08
19GO:0010027: thylakoid membrane organization1.13E-07
20GO:0006021: inositol biosynthetic process4.71E-07
21GO:0010114: response to red light1.27E-06
22GO:0042549: photosystem II stabilization2.06E-06
23GO:0010196: nonphotochemical quenching5.75E-06
24GO:0009769: photosynthesis, light harvesting in photosystem II5.75E-06
25GO:0010218: response to far red light8.56E-06
26GO:0009637: response to blue light1.22E-05
27GO:0009658: chloroplast organization1.52E-05
28GO:0010206: photosystem II repair1.73E-05
29GO:0009773: photosynthetic electron transport in photosystem I3.87E-05
30GO:0015994: chlorophyll metabolic process6.26E-05
31GO:0006546: glycine catabolic process6.26E-05
32GO:0010207: photosystem II assembly7.21E-05
33GO:0046855: inositol phosphate dephosphorylation1.43E-04
34GO:0009269: response to desiccation1.59E-04
35GO:0010189: vitamin E biosynthetic process1.95E-04
36GO:0006419: alanyl-tRNA aminoacylation3.11E-04
37GO:0009443: pyridoxal 5'-phosphate salvage3.11E-04
38GO:0043953: protein transport by the Tat complex3.11E-04
39GO:0000481: maturation of 5S rRNA3.11E-04
40GO:0051775: response to redox state3.11E-04
41GO:0071277: cellular response to calcium ion3.11E-04
42GO:0065002: intracellular protein transmembrane transport3.11E-04
43GO:0043686: co-translational protein modification3.11E-04
44GO:0043007: maintenance of rDNA3.11E-04
45GO:0010028: xanthophyll cycle3.11E-04
46GO:0034337: RNA folding3.11E-04
47GO:0048564: photosystem I assembly3.21E-04
48GO:0009642: response to light intensity3.21E-04
49GO:0009416: response to light stimulus3.79E-04
50GO:0090333: regulation of stomatal closure4.73E-04
51GO:0010205: photoinhibition5.59E-04
52GO:0030388: fructose 1,6-bisphosphate metabolic process6.81E-04
53GO:0080181: lateral root branching6.81E-04
54GO:0010275: NAD(P)H dehydrogenase complex assembly6.81E-04
55GO:0035304: regulation of protein dephosphorylation6.81E-04
56GO:0009915: phloem sucrose loading6.81E-04
57GO:0010042: response to manganese ion6.81E-04
58GO:0006432: phenylalanyl-tRNA aminoacylation6.81E-04
59GO:0018026: peptidyl-lysine monomethylation6.81E-04
60GO:0000256: allantoin catabolic process6.81E-04
61GO:0016122: xanthophyll metabolic process6.81E-04
62GO:0006729: tetrahydrobiopterin biosynthetic process6.81E-04
63GO:0006790: sulfur compound metabolic process8.60E-04
64GO:0016311: dephosphorylation8.80E-04
65GO:0006094: gluconeogenesis9.73E-04
66GO:0019253: reductive pentose-phosphate cycle1.09E-03
67GO:0006000: fructose metabolic process1.10E-03
68GO:0010136: ureide catabolic process1.10E-03
69GO:0071492: cellular response to UV-A1.10E-03
70GO:0005977: glycogen metabolic process1.10E-03
71GO:0046854: phosphatidylinositol phosphorylation1.22E-03
72GO:0006810: transport1.38E-03
73GO:0071484: cellular response to light intensity1.58E-03
74GO:0006107: oxaloacetate metabolic process1.58E-03
75GO:0009052: pentose-phosphate shunt, non-oxidative branch1.58E-03
76GO:0006145: purine nucleobase catabolic process1.58E-03
77GO:0042989: sequestering of actin monomers1.58E-03
78GO:0042823: pyridoxal phosphate biosynthetic process1.58E-03
79GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.58E-03
80GO:2001141: regulation of RNA biosynthetic process1.58E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.58E-03
82GO:0006020: inositol metabolic process1.58E-03
83GO:0071486: cellular response to high light intensity2.12E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system2.12E-03
85GO:0009765: photosynthesis, light harvesting2.12E-03
86GO:0030104: water homeostasis2.12E-03
87GO:0006734: NADH metabolic process2.12E-03
88GO:0010021: amylopectin biosynthetic process2.12E-03
89GO:0016558: protein import into peroxisome matrix2.71E-03
90GO:0030041: actin filament polymerization2.71E-03
91GO:0006564: L-serine biosynthetic process2.71E-03
92GO:0010236: plastoquinone biosynthetic process2.71E-03
93GO:0006656: phosphatidylcholine biosynthetic process2.71E-03
94GO:0031365: N-terminal protein amino acid modification2.71E-03
95GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.35E-03
96GO:0042793: transcription from plastid promoter3.35E-03
97GO:0050665: hydrogen peroxide biosynthetic process3.35E-03
98GO:0019252: starch biosynthetic process3.43E-03
99GO:0071470: cellular response to osmotic stress4.03E-03
100GO:1901259: chloroplast rRNA processing4.03E-03
101GO:0009854: oxidative photosynthetic carbon pathway4.03E-03
102GO:0009793: embryo development ending in seed dormancy4.09E-03
103GO:0030026: cellular manganese ion homeostasis4.76E-03
104GO:1900057: positive regulation of leaf senescence4.76E-03
105GO:0006400: tRNA modification4.76E-03
106GO:0051510: regulation of unidimensional cell growth4.76E-03
107GO:0030091: protein repair5.53E-03
108GO:0009704: de-etiolation5.53E-03
109GO:0032508: DNA duplex unwinding5.53E-03
110GO:0009231: riboflavin biosynthetic process5.53E-03
111GO:0016559: peroxisome fission5.53E-03
112GO:0045454: cell redox homeostasis5.64E-03
113GO:0015995: chlorophyll biosynthetic process6.26E-03
114GO:0006002: fructose 6-phosphate metabolic process6.33E-03
115GO:0071482: cellular response to light stimulus6.33E-03
116GO:0032544: plastid translation6.33E-03
117GO:0017004: cytochrome complex assembly6.33E-03
118GO:0055114: oxidation-reduction process6.54E-03
119GO:0098656: anion transmembrane transport7.19E-03
120GO:0009821: alkaloid biosynthetic process7.19E-03
121GO:0006098: pentose-phosphate shunt7.19E-03
122GO:0006754: ATP biosynthetic process7.19E-03
123GO:0000373: Group II intron splicing7.19E-03
124GO:0032259: methylation7.26E-03
125GO:0034599: cellular response to oxidative stress9.20E-03
126GO:0019684: photosynthesis, light reaction9.96E-03
127GO:0072593: reactive oxygen species metabolic process9.96E-03
128GO:0043085: positive regulation of catalytic activity9.96E-03
129GO:0006352: DNA-templated transcription, initiation9.96E-03
130GO:0009409: response to cold1.05E-02
131GO:0005983: starch catabolic process1.10E-02
132GO:0005986: sucrose biosynthetic process1.20E-02
133GO:0006108: malate metabolic process1.20E-02
134GO:0006006: glucose metabolic process1.20E-02
135GO:0010020: chloroplast fission1.31E-02
136GO:0009266: response to temperature stimulus1.31E-02
137GO:0046686: response to cadmium ion1.37E-02
138GO:0046688: response to copper ion1.42E-02
139GO:0019853: L-ascorbic acid biosynthetic process1.42E-02
140GO:0090351: seedling development1.42E-02
141GO:0010030: positive regulation of seed germination1.42E-02
142GO:0006863: purine nucleobase transport1.53E-02
143GO:0006833: water transport1.53E-02
144GO:0006364: rRNA processing1.54E-02
145GO:0010224: response to UV-B1.59E-02
146GO:0009735: response to cytokinin1.61E-02
147GO:0080147: root hair cell development1.65E-02
148GO:0007010: cytoskeleton organization1.65E-02
149GO:0007017: microtubule-based process1.77E-02
150GO:0006096: glycolytic process1.82E-02
151GO:0080167: response to karrikin1.83E-02
152GO:0048278: vesicle docking1.89E-02
153GO:0006730: one-carbon metabolic process2.01E-02
154GO:0019748: secondary metabolic process2.01E-02
155GO:0071215: cellular response to abscisic acid stimulus2.14E-02
156GO:0009561: megagametogenesis2.27E-02
157GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.41E-02
158GO:0042631: cellular response to water deprivation2.55E-02
159GO:0034220: ion transmembrane transport2.55E-02
160GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
161GO:0006606: protein import into nucleus2.55E-02
162GO:0006662: glycerol ether metabolic process2.68E-02
163GO:0048868: pollen tube development2.68E-02
164GO:0061025: membrane fusion2.83E-02
165GO:0006814: sodium ion transport2.83E-02
166GO:0016042: lipid catabolic process2.87E-02
167GO:0009791: post-embryonic development2.97E-02
168GO:0009845: seed germination2.97E-02
169GO:0008654: phospholipid biosynthetic process2.97E-02
170GO:0055072: iron ion homeostasis2.97E-02
171GO:0071554: cell wall organization or biogenesis3.12E-02
172GO:0006635: fatty acid beta-oxidation3.12E-02
173GO:0010193: response to ozone3.12E-02
174GO:0009790: embryo development3.20E-02
175GO:0010583: response to cyclopentenone3.27E-02
176GO:0009567: double fertilization forming a zygote and endosperm3.58E-02
177GO:0005975: carbohydrate metabolic process3.60E-02
178GO:0009451: RNA modification3.87E-02
179GO:0051607: defense response to virus3.89E-02
180GO:0042128: nitrate assimilation4.38E-02
181GO:0006906: vesicle fusion4.38E-02
182GO:0009627: systemic acquired resistance4.38E-02
183GO:0010411: xyloglucan metabolic process4.55E-02
184GO:0009817: defense response to fungus, incompatible interaction4.89E-02
RankGO TermAdjusted P value
1GO:0043136: glycerol-3-phosphatase activity0.00E+00
2GO:0000121: glycerol-1-phosphatase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
8GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
9GO:0009976: tocopherol cyclase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0042623: ATPase activity, coupled0.00E+00
14GO:0010486: manganese:proton antiporter activity0.00E+00
15GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0050281: serine-glyoxylate transaminase activity0.00E+00
18GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
19GO:0031409: pigment binding1.16E-11
20GO:0016168: chlorophyll binding8.78E-11
21GO:0052832: inositol monophosphate 3-phosphatase activity4.41E-06
22GO:0008934: inositol monophosphate 1-phosphatase activity4.41E-06
23GO:0052833: inositol monophosphate 4-phosphatase activity4.41E-06
24GO:0031072: heat shock protein binding5.95E-05
25GO:0046872: metal ion binding8.71E-05
26GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.95E-04
27GO:0004451: isocitrate lyase activity3.11E-04
28GO:0050308: sugar-phosphatase activity3.11E-04
29GO:0019203: carbohydrate phosphatase activity3.11E-04
30GO:0004813: alanine-tRNA ligase activity3.11E-04
31GO:0010242: oxygen evolving activity3.11E-04
32GO:0042586: peptide deformylase activity3.11E-04
33GO:0008746: NAD(P)+ transhydrogenase activity3.11E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.11E-04
35GO:0045486: naringenin 3-dioxygenase activity3.11E-04
36GO:0010347: L-galactose-1-phosphate phosphatase activity3.11E-04
37GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.11E-04
38GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.11E-04
39GO:0004617: phosphoglycerate dehydrogenase activity6.81E-04
40GO:0004047: aminomethyltransferase activity6.81E-04
41GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.81E-04
42GO:0019172: glyoxalase III activity6.81E-04
43GO:0019156: isoamylase activity6.81E-04
44GO:0004826: phenylalanine-tRNA ligase activity6.81E-04
45GO:0000234: phosphoethanolamine N-methyltransferase activity6.81E-04
46GO:0004512: inositol-3-phosphate synthase activity6.81E-04
47GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.81E-04
48GO:0047746: chlorophyllase activity6.81E-04
49GO:0009977: proton motive force dependent protein transmembrane transporter activity6.81E-04
50GO:0000049: tRNA binding8.60E-04
51GO:0019843: rRNA binding9.76E-04
52GO:0003913: DNA photolyase activity1.10E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.10E-03
54GO:0004751: ribose-5-phosphate isomerase activity1.10E-03
55GO:0070402: NADPH binding1.10E-03
56GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
57GO:0003993: acid phosphatase activity1.33E-03
58GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.58E-03
59GO:0004375: glycine dehydrogenase (decarboxylating) activity1.58E-03
60GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.58E-03
61GO:0008508: bile acid:sodium symporter activity1.58E-03
62GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.58E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.12E-03
64GO:0008453: alanine-glyoxylate transaminase activity2.12E-03
65GO:0016987: sigma factor activity2.12E-03
66GO:0008891: glycolate oxidase activity2.12E-03
67GO:0016279: protein-lysine N-methyltransferase activity2.12E-03
68GO:0001053: plastid sigma factor activity2.12E-03
69GO:0003785: actin monomer binding2.71E-03
70GO:0016853: isomerase activity3.20E-03
71GO:0004332: fructose-bisphosphate aldolase activity3.35E-03
72GO:0004556: alpha-amylase activity3.35E-03
73GO:0004462: lactoylglutathione lyase activity3.35E-03
74GO:0000293: ferric-chelate reductase activity3.35E-03
75GO:0042578: phosphoric ester hydrolase activity3.35E-03
76GO:0016615: malate dehydrogenase activity3.35E-03
77GO:2001070: starch binding3.35E-03
78GO:0051082: unfolded protein binding3.97E-03
79GO:0008195: phosphatidate phosphatase activity4.03E-03
80GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.03E-03
81GO:0030060: L-malate dehydrogenase activity4.03E-03
82GO:0009881: photoreceptor activity4.76E-03
83GO:0016597: amino acid binding5.02E-03
84GO:0004033: aldo-keto reductase (NADP) activity5.53E-03
85GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity6.33E-03
86GO:0103095: wax ester synthase activity6.33E-03
87GO:0008135: translation factor activity, RNA binding6.33E-03
88GO:0008757: S-adenosylmethionine-dependent methyltransferase activity6.59E-03
89GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.19E-03
90GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.19E-03
91GO:0003924: GTPase activity7.75E-03
92GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.07E-03
93GO:0005384: manganese ion transmembrane transporter activity8.07E-03
94GO:0016844: strictosidine synthase activity8.07E-03
95GO:0003746: translation elongation factor activity8.80E-03
96GO:0008047: enzyme activator activity9.00E-03
97GO:0016491: oxidoreductase activity9.93E-03
98GO:0005089: Rho guanyl-nucleotide exchange factor activity9.96E-03
99GO:0042802: identical protein binding1.08E-02
100GO:0004565: beta-galactosidase activity1.20E-02
101GO:0008081: phosphoric diester hydrolase activity1.20E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.20E-02
103GO:0004089: carbonate dehydratase activity1.20E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.23E-02
105GO:0008266: poly(U) RNA binding1.31E-02
106GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.33E-02
107GO:0051287: NAD binding1.38E-02
108GO:0016788: hydrolase activity, acting on ester bonds1.42E-02
109GO:0031418: L-ascorbic acid binding1.65E-02
110GO:0043424: protein histidine kinase binding1.77E-02
111GO:0005345: purine nucleobase transmembrane transporter activity1.77E-02
112GO:0008324: cation transmembrane transporter activity1.77E-02
113GO:0052689: carboxylic ester hydrolase activity2.07E-02
114GO:0022891: substrate-specific transmembrane transporter activity2.14E-02
115GO:0015035: protein disulfide oxidoreductase activity2.26E-02
116GO:0008514: organic anion transmembrane transporter activity2.27E-02
117GO:0003756: protein disulfide isomerase activity2.27E-02
118GO:0047134: protein-disulfide reductase activity2.41E-02
119GO:0004791: thioredoxin-disulfide reductase activity2.83E-02
120GO:0010181: FMN binding2.83E-02
121GO:0048038: quinone binding3.12E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity3.12E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.42E-02
124GO:0008483: transaminase activity3.73E-02
125GO:0005525: GTP binding3.83E-02
126GO:0016413: O-acetyltransferase activity3.89E-02
127GO:0015250: water channel activity4.05E-02
128GO:0016798: hydrolase activity, acting on glycosyl bonds4.55E-02
129GO:0005509: calcium ion binding4.60E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009349: riboflavin synthase complex0.00E+00
5GO:0009507: chloroplast2.05E-55
6GO:0009535: chloroplast thylakoid membrane1.07E-46
7GO:0009534: chloroplast thylakoid3.14E-40
8GO:0009579: thylakoid1.00E-26
9GO:0009941: chloroplast envelope8.27E-24
10GO:0009570: chloroplast stroma1.44E-21
11GO:0010287: plastoglobule3.87E-15
12GO:0009543: chloroplast thylakoid lumen1.80E-13
13GO:0030095: chloroplast photosystem II4.42E-10
14GO:0009523: photosystem II5.48E-10
15GO:0031977: thylakoid lumen1.29E-09
16GO:0009522: photosystem I2.07E-08
17GO:0030076: light-harvesting complex4.98E-08
18GO:0009517: PSII associated light-harvesting complex II4.71E-07
19GO:0009654: photosystem II oxygen evolving complex5.59E-06
20GO:0009538: photosystem I reaction center8.68E-06
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.73E-05
22GO:0019898: extrinsic component of membrane2.70E-05
23GO:0048046: apoplast6.85E-05
24GO:0009706: chloroplast inner membrane9.94E-05
25GO:0009533: chloroplast stromal thylakoid2.54E-04
26GO:0031361: integral component of thylakoid membrane3.11E-04
27GO:0009782: photosystem I antenna complex3.11E-04
28GO:0009783: photosystem II antenna complex3.11E-04
29GO:0016020: membrane3.54E-04
30GO:0000427: plastid-encoded plastid RNA polymerase complex6.81E-04
31GO:0033281: TAT protein transport complex1.10E-03
32GO:0042646: plastid nucleoid1.58E-03
33GO:0005960: glycine cleavage complex1.58E-03
34GO:0030286: dynein complex2.12E-03
35GO:0016021: integral component of membrane6.32E-03
36GO:0005759: mitochondrial matrix7.07E-03
37GO:0008180: COP9 signalosome7.19E-03
38GO:0042644: chloroplast nucleoid7.19E-03
39GO:0032040: small-subunit processome1.10E-02
40GO:0009508: plastid chromosome1.20E-02
41GO:0005938: cell cortex1.20E-02
42GO:0022626: cytosolic ribosome1.73E-02
43GO:0015629: actin cytoskeleton2.14E-02
44GO:0005770: late endosome2.68E-02
45GO:0009504: cell plate2.97E-02
46GO:0009295: nucleoid3.73E-02
47GO:0005778: peroxisomal membrane3.73E-02
48GO:0019005: SCF ubiquitin ligase complex4.89E-02
49GO:0009707: chloroplast outer membrane4.89E-02
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Gene type



Gene DE type