co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046294: formaldehyde catabolic process	0.00E+00
2	GO:0010477: response to sulfur dioxide	0.00E+00
3	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
4	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
5	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0009661: chromoplast organization	0.00E+00
8	GO:0033317: pantothenate biosynthetic process from valine	0.00E+00
9	GO:0032780: negative regulation of ATPase activity	0.00E+00
10	GO:0055114: oxidation-reduction process	9.95E-06
11	GO:0016120: carotene biosynthetic process	5.00E-05
12	GO:0010190: cytochrome b6f complex assembly	7.36E-05
13	GO:0071266: 'de novo' L-methionine biosynthetic process	2.06E-04
14	GO:0019346: transsulfuration	2.06E-04
15	GO:0019343: cysteine biosynthetic process via cystathionine	2.06E-04
16	GO:0071461: cellular response to redox state	2.06E-04
17	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.06E-04
18	GO:0043085: positive regulation of catalytic activity	4.23E-04
19	GO:2000030: regulation of response to red or far red light	4.62E-04
20	GO:0080005: photosystem stoichiometry adjustment	4.62E-04
21	GO:1904143: positive regulation of carotenoid biosynthetic process	4.62E-04
22	GO:0080183: response to photooxidative stress	4.62E-04
23	GO:0016122: xanthophyll metabolic process	4.62E-04
24	GO:0006790: sulfur compound metabolic process	4.85E-04
25	GO:0006508: proteolysis	6.29E-04
26	GO:0019419: sulfate reduction	7.52E-04
27	GO:0006013: mannose metabolic process	7.52E-04
28	GO:1901562: response to paraquat	7.52E-04
29	GO:0009150: purine ribonucleotide metabolic process	7.52E-04
30	GO:0015940: pantothenate biosynthetic process	7.52E-04
31	GO:0071492: cellular response to UV-A	7.52E-04
32	GO:0006696: ergosterol biosynthetic process	7.52E-04
33	GO:0044375: regulation of peroxisome size	7.52E-04
34	GO:0010351: lithium ion transport	7.52E-04
35	GO:0009399: nitrogen fixation	1.07E-03
36	GO:0050482: arachidonic acid secretion	1.07E-03
37	GO:2001141: regulation of RNA biosynthetic process	1.07E-03
38	GO:0016226: iron-sulfur cluster assembly	1.12E-03
39	GO:0009658: chloroplast organization	1.24E-03
40	GO:0009765: photosynthesis, light harvesting	1.43E-03
41	GO:0015994: chlorophyll metabolic process	1.43E-03
42	GO:0006221: pyrimidine nucleotide biosynthetic process	1.43E-03
43	GO:0071585: detoxification of cadmium ion	1.43E-03
44	GO:0034613: cellular protein localization	1.43E-03
45	GO:0010021: amylopectin biosynthetic process	1.43E-03
46	GO:0006542: glutamine biosynthetic process	1.43E-03
47	GO:0071486: cellular response to high light intensity	1.43E-03
48	GO:0016117: carotenoid biosynthetic process	1.43E-03
49	GO:0006662: glycerol ether metabolic process	1.66E-03
50	GO:0098719: sodium ion import across plasma membrane	1.81E-03
51	GO:0010117: photoprotection	1.81E-03
52	GO:0010236: plastoquinone biosynthetic process	1.81E-03
53	GO:0035434: copper ion transmembrane transport	1.81E-03
54	GO:0007094: mitotic spindle assembly checkpoint	1.81E-03
55	GO:0006555: methionine metabolic process	2.24E-03
56	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.24E-03
57	GO:0006796: phosphate-containing compound metabolic process	2.24E-03
58	GO:0033365: protein localization to organelle	2.24E-03
59	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.24E-03
60	GO:0019509: L-methionine salvage from methylthioadenosine	2.69E-03
61	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.69E-03
62	GO:0010189: vitamin E biosynthetic process	2.69E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	2.69E-03
64	GO:0010038: response to metal ion	3.16E-03
65	GO:0050790: regulation of catalytic activity	3.16E-03
66	GO:0042128: nitrate assimilation	3.27E-03
67	GO:0048564: photosystem I assembly	3.67E-03
68	GO:0050821: protein stabilization	3.67E-03
69	GO:0009231: riboflavin biosynthetic process	3.67E-03
70	GO:0006102: isocitrate metabolic process	3.67E-03
71	GO:0016559: peroxisome fission	3.67E-03
72	GO:0006644: phospholipid metabolic process	3.67E-03
73	GO:0071482: cellular response to light stimulus	4.20E-03
74	GO:0015996: chlorophyll catabolic process	4.20E-03
75	GO:0009880: embryonic pattern specification	4.20E-03
76	GO:0009821: alkaloid biosynthetic process	4.75E-03
77	GO:0046685: response to arsenic-containing substance	4.75E-03
78	GO:0034599: cellular response to oxidative stress	5.05E-03
79	GO:0051453: regulation of intracellular pH	5.32E-03
80	GO:0000103: sulfate assimilation	5.93E-03
81	GO:0009688: abscisic acid biosynthetic process	5.93E-03
82	GO:0006879: cellular iron ion homeostasis	6.55E-03
83	GO:0006352: DNA-templated transcription, initiation	6.55E-03
84	GO:0010207: photosystem II assembly	8.56E-03
85	GO:0051603: proteolysis involved in cellular protein catabolic process	8.70E-03
86	GO:0007031: peroxisome organization	9.27E-03
87	GO:0045454: cell redox homeostasis	1.07E-02
88	GO:0019344: cysteine biosynthetic process	1.08E-02
89	GO:0008299: isoprenoid biosynthetic process	1.15E-02
90	GO:0007017: microtubule-based process	1.15E-02
91	GO:0006825: copper ion transport	1.15E-02
92	GO:0019915: lipid storage	1.23E-02
93	GO:0006012: galactose metabolic process	1.40E-02
94	GO:0006817: phosphate ion transport	1.48E-02
95	GO:0010051: xylem and phloem pattern formation	1.66E-02
96	GO:0006814: sodium ion transport	1.84E-02
97	GO:0019252: starch biosynthetic process	1.94E-02
98	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.03E-02
99	GO:0030163: protein catabolic process	2.23E-02
100	GO:0071805: potassium ion transmembrane transport	2.43E-02
101	GO:0016126: sterol biosynthetic process	2.64E-02
102	GO:0006974: cellular response to DNA damage stimulus	2.86E-02
103	GO:0009611: response to wounding	2.96E-02
104	GO:0015995: chlorophyll biosynthetic process	2.97E-02
105	GO:0006950: response to stress	2.97E-02
106	GO:0010043: response to zinc ion	3.54E-02
107	GO:0007568: aging	3.54E-02
108	GO:0009853: photorespiration	3.78E-02
109	GO:0006099: tricarboxylic acid cycle	3.90E-02
110	GO:0042546: cell wall biogenesis	4.65E-02
111	GO:0009636: response to toxic substance	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
5	GO:0008482: sulfite oxidase activity	0.00E+00
6	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
7	GO:0042030: ATPase inhibitor activity	0.00E+00
8	GO:0004592: pantoate-beta-alanine ligase activity	0.00E+00
9	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
10	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
11	GO:0045436: lycopene beta cyclase activity	0.00E+00
12	GO:0004848: ureidoglycolate hydrolase activity	7.40E-06
13	GO:0004180: carboxypeptidase activity	7.40E-06
14	GO:0016491: oxidoreductase activity	8.12E-06
15	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.69E-05
16	GO:0004121: cystathionine beta-lyase activity	2.06E-04
17	GO:0051996: squalene synthase activity	2.06E-04
18	GO:0016783: sulfurtransferase activity	2.06E-04
19	GO:0030611: arsenate reductase activity	2.06E-04
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.06E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.06E-04
22	GO:0004123: cystathionine gamma-lyase activity	2.06E-04
23	GO:0046906: tetrapyrrole binding	2.06E-04
24	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.27E-04
25	GO:0008236: serine-type peptidase activity	4.16E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	4.62E-04
27	GO:0050347: trans-octaprenyltranstransferase activity	4.62E-04
28	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.62E-04
29	GO:0004046: aminoacylase activity	4.62E-04
30	GO:0009973: adenylyl-sulfate reductase activity	4.62E-04
31	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	4.62E-04
32	GO:0004450: isocitrate dehydrogenase (NADP+) activity	4.62E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.62E-04
34	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	4.62E-04
35	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	4.62E-04
36	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.52E-04
37	GO:0004373: glycogen (starch) synthase activity	7.52E-04
38	GO:0032947: protein complex scaffold	7.52E-04
39	GO:0004557: alpha-galactosidase activity	7.52E-04
40	GO:0003935: GTP cyclohydrolase II activity	7.52E-04
41	GO:0003962: cystathionine gamma-synthase activity	7.52E-04
42	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.52E-04
43	GO:0004176: ATP-dependent peptidase activity	1.02E-03
44	GO:0000254: C-4 methylsterol oxidase activity	1.07E-03
45	GO:0004416: hydroxyacylglutathione hydrolase activity	1.07E-03
46	GO:0004792: thiosulfate sulfurtransferase activity	1.07E-03
47	GO:0047627: adenylylsulfatase activity	1.07E-03
48	GO:0016987: sigma factor activity	1.43E-03
49	GO:0009011: starch synthase activity	1.43E-03
50	GO:0047134: protein-disulfide reductase activity	1.43E-03
51	GO:0001053: plastid sigma factor activity	1.43E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	1.78E-03
53	GO:0016853: isomerase activity	1.78E-03
54	GO:0004623: phospholipase A2 activity	1.81E-03
55	GO:0004356: glutamate-ammonia ligase activity	1.81E-03
56	GO:0030151: molybdenum ion binding	1.81E-03
57	GO:0048038: quinone binding	2.04E-03
58	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.24E-03
59	GO:0015081: sodium ion transmembrane transporter activity	2.24E-03
60	GO:0008237: metallopeptidase activity	2.62E-03
61	GO:0004559: alpha-mannosidase activity	2.69E-03
62	GO:0004427: inorganic diphosphatase activity	3.16E-03
63	GO:0019899: enzyme binding	3.16E-03
64	GO:0004034: aldose 1-epimerase activity	3.67E-03
65	GO:0005375: copper ion transmembrane transporter activity	4.20E-03
66	GO:0004222: metalloendopeptidase activity	4.21E-03
67	GO:0071949: FAD binding	4.75E-03
68	GO:0016844: strictosidine synthase activity	5.32E-03
69	GO:0008047: enzyme activator activity	5.93E-03
70	GO:0015386: potassium:proton antiporter activity	6.55E-03
71	GO:0004129: cytochrome-c oxidase activity	6.55E-03
72	GO:0008794: arsenate reductase (glutaredoxin) activity	6.55E-03
73	GO:0016788: hydrolase activity, acting on ester bonds	6.64E-03
74	GO:0015266: protein channel activity	7.87E-03
75	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	7.87E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	7.87E-03
77	GO:0031072: heat shock protein binding	7.87E-03
78	GO:0004725: protein tyrosine phosphatase activity	1.00E-02
79	GO:0051536: iron-sulfur cluster binding	1.08E-02
80	GO:0016746: transferase activity, transferring acyl groups	1.23E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.23E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
83	GO:0008080: N-acetyltransferase activity	1.75E-02
84	GO:0004518: nuclease activity	2.13E-02
85	GO:0004197: cysteine-type endopeptidase activity	2.13E-02
86	GO:0015385: sodium:proton antiporter activity	2.23E-02
87	GO:0016168: chlorophyll binding	2.75E-02
88	GO:0000287: magnesium ion binding	3.16E-02
89	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.19E-02
90	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.78E-02
91	GO:0052689: carboxylic ester hydrolase activity	4.39E-02
92	GO:0004364: glutathione transferase activity	4.40E-02
93	GO:0004185: serine-type carboxypeptidase activity	4.52E-02
94	GO:0005198: structural molecule activity	4.91E-02
95	GO:0015293: symporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.80E-12
2	GO:0009535: chloroplast thylakoid membrane	6.40E-05
3	GO:0031972: chloroplast intermembrane space	2.06E-04
4	GO:0005747: mitochondrial respiratory chain complex I	2.12E-04
5	GO:0005773: vacuole	3.25E-04
6	GO:0031969: chloroplast membrane	3.32E-04
7	GO:0009517: PSII associated light-harvesting complex II	1.43E-03
8	GO:0009527: plastid outer membrane	1.43E-03
9	GO:0030286: dynein complex	1.43E-03
10	GO:0009570: chloroplast stroma	1.68E-03
11	GO:0005777: peroxisome	2.33E-03
12	GO:0009840: chloroplastic endopeptidase Clp complex	2.69E-03
13	GO:0009501: amyloplast	3.67E-03
14	GO:0005779: integral component of peroxisomal membrane	4.20E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.75E-03
16	GO:0031966: mitochondrial membrane	7.82E-03
17	GO:0005764: lysosome	8.56E-03
18	GO:0005875: microtubule associated complex	1.00E-02
19	GO:0045271: respiratory chain complex I	1.15E-02
20	GO:0009532: plastid stroma	1.23E-02
21	GO:0005829: cytosol	1.40E-02
22	GO:0010287: plastoglobule	1.42E-02
23	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.48E-02
24	GO:0009523: photosystem II	1.94E-02
25	GO:0032580: Golgi cisterna membrane	2.33E-02
26	GO:0005778: peroxisomal membrane	2.43E-02
27	GO:0005739: mitochondrion	2.68E-02
28	GO:0009536: plastid	2.91E-02
29	GO:0009505: plant-type cell wall	3.00E-02
30	GO:0009941: chloroplast envelope	3.51E-02
31	GO:0031977: thylakoid lumen	4.27E-02