GO Enrichment Analysis of Co-expressed Genes with
AT5G13630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080114: positive regulation of glycine hydroxymethyltransferase activity | 0.00E+00 |
| 2 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 3 | GO:1903428: positive regulation of reactive oxygen species biosynthetic process | 0.00E+00 |
| 4 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 5 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 6 | GO:0016118: carotenoid catabolic process | 0.00E+00 |
| 7 | GO:0017038: protein import | 0.00E+00 |
| 8 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.03E-21 |
| 9 | GO:0015979: photosynthesis | 2.23E-19 |
| 10 | GO:0018298: protein-chromophore linkage | 3.46E-19 |
| 11 | GO:0009645: response to low light intensity stimulus | 4.66E-12 |
| 12 | GO:0010196: nonphotochemical quenching | 4.66E-12 |
| 13 | GO:0009644: response to high light intensity | 3.02E-10 |
| 14 | GO:0010207: photosystem II assembly | 5.69E-10 |
| 15 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.70E-09 |
| 16 | GO:0010114: response to red light | 1.17E-08 |
| 17 | GO:0009416: response to light stimulus | 2.33E-08 |
| 18 | GO:0010218: response to far red light | 1.70E-07 |
| 19 | GO:0010206: photosystem II repair | 1.32E-06 |
| 20 | GO:0090391: granum assembly | 2.29E-06 |
| 21 | GO:0006000: fructose metabolic process | 2.29E-06 |
| 22 | GO:0009773: photosynthetic electron transport in photosystem I | 3.21E-06 |
| 23 | GO:0006094: gluconeogenesis | 5.19E-06 |
| 24 | GO:0042742: defense response to bacterium | 5.40E-06 |
| 25 | GO:0019253: reductive pentose-phosphate cycle | 6.46E-06 |
| 26 | GO:0009637: response to blue light | 9.07E-06 |
| 27 | GO:0006021: inositol biosynthetic process | 1.03E-05 |
| 28 | GO:0009269: response to desiccation | 1.60E-05 |
| 29 | GO:0016123: xanthophyll biosynthetic process | 1.69E-05 |
| 30 | GO:0055114: oxidation-reduction process | 1.89E-05 |
| 31 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.57E-05 |
| 32 | GO:0009658: chloroplast organization | 3.20E-05 |
| 33 | GO:0010189: vitamin E biosynthetic process | 3.64E-05 |
| 34 | GO:0006096: glycolytic process | 3.92E-05 |
| 35 | GO:0009772: photosynthetic electron transport in photosystem II | 4.92E-05 |
| 36 | GO:0009642: response to light intensity | 6.41E-05 |
| 37 | GO:0006002: fructose 6-phosphate metabolic process | 8.11E-05 |
| 38 | GO:0006098: pentose-phosphate shunt | 1.00E-04 |
| 39 | GO:0009409: response to cold | 1.07E-04 |
| 40 | GO:0006659: phosphatidylserine biosynthetic process | 1.08E-04 |
| 41 | GO:0080093: regulation of photorespiration | 1.08E-04 |
| 42 | GO:0043609: regulation of carbon utilization | 1.08E-04 |
| 43 | GO:0031998: regulation of fatty acid beta-oxidation | 1.08E-04 |
| 44 | GO:0034337: RNA folding | 1.08E-04 |
| 45 | GO:0051775: response to redox state | 1.08E-04 |
| 46 | GO:0015995: chlorophyll biosynthetic process | 1.13E-04 |
| 47 | GO:0010205: photoinhibition | 1.21E-04 |
| 48 | GO:0043085: positive regulation of catalytic activity | 1.69E-04 |
| 49 | GO:0019684: photosynthesis, light reaction | 1.69E-04 |
| 50 | GO:0034599: cellular response to oxidative stress | 1.97E-04 |
| 51 | GO:0006108: malate metabolic process | 2.25E-04 |
| 52 | GO:0006006: glucose metabolic process | 2.25E-04 |
| 53 | GO:0006432: phenylalanyl-tRNA aminoacylation | 2.52E-04 |
| 54 | GO:0097054: L-glutamate biosynthetic process | 2.52E-04 |
| 55 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.52E-04 |
| 56 | GO:0016121: carotene catabolic process | 2.52E-04 |
| 57 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 2.52E-04 |
| 58 | GO:0035304: regulation of protein dephosphorylation | 2.52E-04 |
| 59 | GO:0016124: xanthophyll catabolic process | 2.52E-04 |
| 60 | GO:0009735: response to cytokinin | 3.12E-04 |
| 61 | GO:1902448: positive regulation of shade avoidance | 4.19E-04 |
| 62 | GO:0080167: response to karrikin | 4.39E-04 |
| 63 | GO:0071484: cellular response to light intensity | 6.01E-04 |
| 64 | GO:0006107: oxaloacetate metabolic process | 6.01E-04 |
| 65 | GO:0006537: glutamate biosynthetic process | 6.01E-04 |
| 66 | GO:0016117: carotenoid biosynthetic process | 6.05E-04 |
| 67 | GO:0006662: glycerol ether metabolic process | 7.01E-04 |
| 68 | GO:0006814: sodium ion transport | 7.52E-04 |
| 69 | GO:0006546: glycine catabolic process | 7.98E-04 |
| 70 | GO:0006734: NADH metabolic process | 7.98E-04 |
| 71 | GO:0010109: regulation of photosynthesis | 7.98E-04 |
| 72 | GO:0019676: ammonia assimilation cycle | 7.98E-04 |
| 73 | GO:0015976: carbon utilization | 7.98E-04 |
| 74 | GO:0019464: glycine decarboxylation via glycine cleavage system | 7.98E-04 |
| 75 | GO:0009765: photosynthesis, light harvesting | 7.98E-04 |
| 76 | GO:0006109: regulation of carbohydrate metabolic process | 7.98E-04 |
| 77 | GO:0045727: positive regulation of translation | 7.98E-04 |
| 78 | GO:0015994: chlorophyll metabolic process | 7.98E-04 |
| 79 | GO:0030104: water homeostasis | 7.98E-04 |
| 80 | GO:0008654: phospholipid biosynthetic process | 8.05E-04 |
| 81 | GO:0009791: post-embryonic development | 8.05E-04 |
| 82 | GO:0010236: plastoquinone biosynthetic process | 1.01E-03 |
| 83 | GO:0006097: glyoxylate cycle | 1.01E-03 |
| 84 | GO:0016120: carotene biosynthetic process | 1.01E-03 |
| 85 | GO:0010027: thylakoid membrane organization | 1.22E-03 |
| 86 | GO:0009635: response to herbicide | 1.23E-03 |
| 87 | GO:0050665: hydrogen peroxide biosynthetic process | 1.23E-03 |
| 88 | GO:0042549: photosystem II stabilization | 1.23E-03 |
| 89 | GO:0009854: oxidative photosynthetic carbon pathway | 1.47E-03 |
| 90 | GO:0071470: cellular response to osmotic stress | 1.47E-03 |
| 91 | GO:1901259: chloroplast rRNA processing | 1.47E-03 |
| 92 | GO:0071446: cellular response to salicylic acid stimulus | 1.73E-03 |
| 93 | GO:0006605: protein targeting | 2.00E-03 |
| 94 | GO:0006099: tricarboxylic acid cycle | 2.08E-03 |
| 95 | GO:0032544: plastid translation | 2.28E-03 |
| 96 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 2.28E-03 |
| 97 | GO:0071482: cellular response to light stimulus | 2.28E-03 |
| 98 | GO:0009744: response to sucrose | 2.56E-03 |
| 99 | GO:0090333: regulation of stomatal closure | 2.57E-03 |
| 100 | GO:0006754: ATP biosynthetic process | 2.57E-03 |
| 101 | GO:0009245: lipid A biosynthetic process | 2.57E-03 |
| 102 | GO:0009688: abscisic acid biosynthetic process | 3.20E-03 |
| 103 | GO:0045454: cell redox homeostasis | 3.40E-03 |
| 104 | GO:0000272: polysaccharide catabolic process | 3.53E-03 |
| 105 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.53E-03 |
| 106 | GO:0009698: phenylpropanoid metabolic process | 3.53E-03 |
| 107 | GO:0005983: starch catabolic process | 3.87E-03 |
| 108 | GO:0045037: protein import into chloroplast stroma | 3.87E-03 |
| 109 | GO:0005986: sucrose biosynthetic process | 4.23E-03 |
| 110 | GO:0090351: seedling development | 4.96E-03 |
| 111 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.35E-03 |
| 112 | GO:0071215: cellular response to abscisic acid stimulus | 7.42E-03 |
| 113 | GO:0006633: fatty acid biosynthetic process | 7.64E-03 |
| 114 | GO:0007623: circadian rhythm | 8.39E-03 |
| 115 | GO:0042631: cellular response to water deprivation | 8.79E-03 |
| 116 | GO:0042335: cuticle development | 8.79E-03 |
| 117 | GO:0010182: sugar mediated signaling pathway | 9.26E-03 |
| 118 | GO:0015986: ATP synthesis coupled proton transport | 9.74E-03 |
| 119 | GO:0009646: response to absence of light | 9.74E-03 |
| 120 | GO:0019252: starch biosynthetic process | 1.02E-02 |
| 121 | GO:0046686: response to cadmium ion | 1.07E-02 |
| 122 | GO:0071554: cell wall organization or biogenesis | 1.07E-02 |
| 123 | GO:0010090: trichome morphogenesis | 1.18E-02 |
| 124 | GO:0051607: defense response to virus | 1.34E-02 |
| 125 | GO:0009627: systemic acquired resistance | 1.51E-02 |
| 126 | GO:0048573: photoperiodism, flowering | 1.56E-02 |
| 127 | GO:0016311: dephosphorylation | 1.62E-02 |
| 128 | GO:0006499: N-terminal protein myristoylation | 1.80E-02 |
| 129 | GO:0010119: regulation of stomatal movement | 1.86E-02 |
| 130 | GO:0009793: embryo development ending in seed dormancy | 1.94E-02 |
| 131 | GO:0016051: carbohydrate biosynthetic process | 1.99E-02 |
| 132 | GO:0009853: photorespiration | 1.99E-02 |
| 133 | GO:0042542: response to hydrogen peroxide | 2.31E-02 |
| 134 | GO:0009640: photomorphogenesis | 2.38E-02 |
| 135 | GO:0009408: response to heat | 2.39E-02 |
| 136 | GO:0031347: regulation of defense response | 2.73E-02 |
| 137 | GO:0006364: rRNA processing | 2.94E-02 |
| 138 | GO:0043086: negative regulation of catalytic activity | 3.32E-02 |
| 139 | GO:0005975: carbohydrate metabolic process | 3.77E-02 |
| 140 | GO:0009624: response to nematode | 3.78E-02 |
| 141 | GO:0009845: seed germination | 4.69E-02 |
| 142 | GO:0045893: positive regulation of transcription, DNA-templated | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 3 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 6 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 7 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 8 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 9 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 10 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 11 | GO:0016166: phytoene dehydrogenase activity | 0.00E+00 |
| 12 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 13 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 14 | GO:0031409: pigment binding | 2.11E-21 |
| 15 | GO:0016168: chlorophyll binding | 1.30E-17 |
| 16 | GO:0004512: inositol-3-phosphate synthase activity | 6.05E-07 |
| 17 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 6.05E-07 |
| 18 | GO:0016615: malate dehydrogenase activity | 2.57E-05 |
| 19 | GO:0004332: fructose-bisphosphate aldolase activity | 2.57E-05 |
| 20 | GO:0030060: L-malate dehydrogenase activity | 3.64E-05 |
| 21 | GO:0071949: FAD binding | 1.00E-04 |
| 22 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.08E-04 |
| 23 | GO:0016041: glutamate synthase (ferredoxin) activity | 1.08E-04 |
| 24 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.08E-04 |
| 25 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 1.08E-04 |
| 26 | GO:0010242: oxygen evolving activity | 1.08E-04 |
| 27 | GO:0045485: omega-6 fatty acid desaturase activity | 1.08E-04 |
| 28 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.08E-04 |
| 29 | GO:0008047: enzyme activator activity | 1.44E-04 |
| 30 | GO:0046872: metal ion binding | 1.56E-04 |
| 31 | GO:0010291: carotene beta-ring hydroxylase activity | 2.52E-04 |
| 32 | GO:0047746: chlorophyllase activity | 2.52E-04 |
| 33 | GO:0010297: heteropolysaccharide binding | 2.52E-04 |
| 34 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 2.52E-04 |
| 35 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 2.52E-04 |
| 36 | GO:0004826: phenylalanine-tRNA ligase activity | 2.52E-04 |
| 37 | GO:0008266: poly(U) RNA binding | 2.55E-04 |
| 38 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.19E-04 |
| 39 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.19E-04 |
| 40 | GO:0003913: DNA photolyase activity | 4.19E-04 |
| 41 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 6.01E-04 |
| 42 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 6.01E-04 |
| 43 | GO:0008508: bile acid:sodium symporter activity | 6.01E-04 |
| 44 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 6.01E-04 |
| 45 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 6.01E-04 |
| 46 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 6.01E-04 |
| 47 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 6.01E-04 |
| 48 | GO:0047134: protein-disulfide reductase activity | 6.05E-04 |
| 49 | GO:0004791: thioredoxin-disulfide reductase activity | 7.52E-04 |
| 50 | GO:0008891: glycolate oxidase activity | 7.98E-04 |
| 51 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 9.72E-04 |
| 52 | GO:0051538: 3 iron, 4 sulfur cluster binding | 1.01E-03 |
| 53 | GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity | 1.01E-03 |
| 54 | GO:0031177: phosphopantetheine binding | 1.23E-03 |
| 55 | GO:2001070: starch binding | 1.23E-03 |
| 56 | GO:0042578: phosphoric ester hydrolase activity | 1.23E-03 |
| 57 | GO:0000035: acyl binding | 1.47E-03 |
| 58 | GO:0009881: photoreceptor activity | 1.73E-03 |
| 59 | GO:0003746: translation elongation factor activity | 1.99E-03 |
| 60 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.00E-03 |
| 61 | GO:0005515: protein binding | 2.21E-03 |
| 62 | GO:0050661: NADP binding | 2.26E-03 |
| 63 | GO:0008135: translation factor activity, RNA binding | 2.28E-03 |
| 64 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 2.88E-03 |
| 65 | GO:0051287: NAD binding | 3.08E-03 |
| 66 | GO:0030234: enzyme regulator activity | 3.20E-03 |
| 67 | GO:0000049: tRNA binding | 3.87E-03 |
| 68 | GO:0005315: inorganic phosphate transmembrane transporter activity | 4.23E-03 |
| 69 | GO:0004089: carbonate dehydratase activity | 4.23E-03 |
| 70 | GO:0031072: heat shock protein binding | 4.23E-03 |
| 71 | GO:0003712: transcription cofactor activity | 4.96E-03 |
| 72 | GO:0015035: protein disulfide oxidoreductase activity | 5.01E-03 |
| 73 | GO:0003954: NADH dehydrogenase activity | 5.75E-03 |
| 74 | GO:0004857: enzyme inhibitor activity | 5.75E-03 |
| 75 | GO:0019843: rRNA binding | 6.08E-03 |
| 76 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 6.24E-03 |
| 77 | GO:0008514: organic anion transmembrane transporter activity | 7.87E-03 |
| 78 | GO:0003756: protein disulfide isomerase activity | 7.87E-03 |
| 79 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 9.26E-03 |
| 80 | GO:0050662: coenzyme binding | 9.74E-03 |
| 81 | GO:0010181: FMN binding | 9.74E-03 |
| 82 | GO:0016413: O-acetyltransferase activity | 1.34E-02 |
| 83 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.62E-02 |
| 84 | GO:0016787: hydrolase activity | 1.73E-02 |
| 85 | GO:0005509: calcium ion binding | 2.03E-02 |
| 86 | GO:0003993: acid phosphatase activity | 2.05E-02 |
| 87 | GO:0004185: serine-type carboxypeptidase activity | 2.38E-02 |
| 88 | GO:0015293: symporter activity | 2.59E-02 |
| 89 | GO:0005198: structural molecule activity | 2.59E-02 |
| 90 | GO:0016491: oxidoreductase activity | 3.17E-02 |
| 91 | GO:0016874: ligase activity | 3.63E-02 |
| 92 | GO:0051082: unfolded protein binding | 3.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0042579: microbody | 0.00E+00 |
| 3 | GO:0009783: photosystem II antenna complex | 0.00E+00 |
| 4 | GO:0009534: chloroplast thylakoid | 5.11E-49 |
| 5 | GO:0009941: chloroplast envelope | 3.61E-45 |
| 6 | GO:0009507: chloroplast | 4.33E-41 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 2.27E-39 |
| 8 | GO:0009579: thylakoid | 2.64E-32 |
| 9 | GO:0010287: plastoglobule | 2.69E-23 |
| 10 | GO:0009522: photosystem I | 2.41E-21 |
| 11 | GO:0009570: chloroplast stroma | 4.39E-21 |
| 12 | GO:0030076: light-harvesting complex | 1.10E-16 |
| 13 | GO:0009517: PSII associated light-harvesting complex II | 4.21E-11 |
| 14 | GO:0048046: apoplast | 1.60E-10 |
| 15 | GO:0009523: photosystem II | 2.14E-10 |
| 16 | GO:0009543: chloroplast thylakoid lumen | 5.92E-09 |
| 17 | GO:0030095: chloroplast photosystem II | 7.29E-08 |
| 18 | GO:0031977: thylakoid lumen | 4.00E-07 |
| 19 | GO:0016020: membrane | 8.29E-06 |
| 20 | GO:0042651: thylakoid membrane | 1.36E-05 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 1.36E-05 |
| 22 | GO:0019898: extrinsic component of membrane | 4.56E-05 |
| 23 | GO:0031969: chloroplast membrane | 5.20E-05 |
| 24 | GO:0009706: chloroplast inner membrane | 5.61E-05 |
| 25 | GO:0009782: photosystem I antenna complex | 1.08E-04 |
| 26 | GO:0043036: starch grain | 2.52E-04 |
| 27 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.52E-04 |
| 28 | GO:0031304: intrinsic component of mitochondrial inner membrane | 2.52E-04 |
| 29 | GO:0030093: chloroplast photosystem I | 2.52E-04 |
| 30 | GO:0009509: chromoplast | 4.19E-04 |
| 31 | GO:0005960: glycine cleavage complex | 6.01E-04 |
| 32 | GO:0009544: chloroplast ATP synthase complex | 7.98E-04 |
| 33 | GO:0005623: cell | 8.31E-04 |
| 34 | GO:0055035: plastid thylakoid membrane | 1.01E-03 |
| 35 | GO:0016021: integral component of membrane | 1.05E-03 |
| 36 | GO:0010319: stromule | 1.09E-03 |
| 37 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.23E-03 |
| 38 | GO:0009533: chloroplast stromal thylakoid | 1.73E-03 |
| 39 | GO:0009538: photosystem I reaction center | 2.00E-03 |
| 40 | GO:0005777: peroxisome | 2.32E-03 |
| 41 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.57E-03 |
| 42 | GO:0032040: small-subunit processome | 3.87E-03 |
| 43 | GO:0005759: mitochondrial matrix | 7.64E-03 |
| 44 | GO:0005773: vacuole | 2.33E-02 |
| 45 | GO:0022626: cytosolic ribosome | 4.05E-02 |