co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G13300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048856: anatomical structure development	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
4	GO:0016576: histone dephosphorylation	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:0009583: detection of light stimulus	0.00E+00
7	GO:0010343: singlet oxygen-mediated programmed cell death	2.58E-07
8	GO:0019346: transsulfuration	6.74E-05
9	GO:0019343: cysteine biosynthetic process via cystathionine	6.74E-05
10	GO:0034971: histone H3-R17 methylation	6.74E-05
11	GO:0072387: flavin adenine dinucleotide metabolic process	6.74E-05
12	GO:0034970: histone H3-R2 methylation	6.74E-05
13	GO:0034972: histone H3-R26 methylation	6.74E-05
14	GO:0071266: 'de novo' L-methionine biosynthetic process	6.74E-05
15	GO:1902265: abscisic acid homeostasis	6.74E-05
16	GO:0010617: circadian regulation of calcium ion oscillation	1.62E-04
17	GO:0099402: plant organ development	1.62E-04
18	GO:0035335: peptidyl-tyrosine dephosphorylation	1.62E-04
19	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	1.62E-04
20	GO:0043039: tRNA aminoacylation	1.62E-04
21	GO:1901529: positive regulation of anion channel activity	1.62E-04
22	GO:0048255: mRNA stabilization	1.62E-04
23	GO:1901672: positive regulation of systemic acquired resistance	2.75E-04
24	GO:0045739: positive regulation of DNA repair	2.75E-04
25	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.75E-04
26	GO:0031022: nuclear migration along microfilament	2.75E-04
27	GO:1902448: positive regulation of shade avoidance	2.75E-04
28	GO:0006013: mannose metabolic process	2.75E-04
29	GO:0033014: tetrapyrrole biosynthetic process	3.98E-04
30	GO:1901332: negative regulation of lateral root development	3.98E-04
31	GO:0051289: protein homotetramerization	3.98E-04
32	GO:1902476: chloride transmembrane transport	3.98E-04
33	GO:1902347: response to strigolactone	5.32E-04
34	GO:0009902: chloroplast relocation	5.32E-04
35	GO:0034613: cellular protein localization	5.32E-04
36	GO:0031935: regulation of chromatin silencing	5.32E-04
37	GO:0006552: leucine catabolic process	5.32E-04
38	GO:0051567: histone H3-K9 methylation	5.32E-04
39	GO:0000304: response to singlet oxygen	6.73E-04
40	GO:0010117: photoprotection	6.73E-04
41	GO:0046283: anthocyanin-containing compound metabolic process	6.73E-04
42	GO:0009229: thiamine diphosphate biosynthetic process	6.73E-04
43	GO:0009228: thiamine biosynthetic process	8.23E-04
44	GO:0060918: auxin transport	8.23E-04
45	GO:0016458: gene silencing	8.23E-04
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.23E-04
47	GO:0016070: RNA metabolic process	8.23E-04
48	GO:0031053: primary miRNA processing	8.23E-04
49	GO:0045962: positive regulation of development, heterochronic	8.23E-04
50	GO:1901371: regulation of leaf morphogenesis	8.23E-04
51	GO:0009903: chloroplast avoidance movement	9.79E-04
52	GO:0010310: regulation of hydrogen peroxide metabolic process	9.79E-04
53	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.79E-04
54	GO:0009637: response to blue light	1.08E-03
55	GO:0006821: chloride transport	1.14E-03
56	GO:0051510: regulation of unidimensional cell growth	1.14E-03
57	GO:1900056: negative regulation of leaf senescence	1.14E-03
58	GO:0080111: DNA demethylation	1.14E-03
59	GO:0009704: de-etiolation	1.32E-03
60	GO:0045292: mRNA cis splicing, via spliceosome	1.32E-03
61	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.32E-03
62	GO:0006783: heme biosynthetic process	1.69E-03
63	GO:0098656: anion transmembrane transport	1.69E-03
64	GO:1900426: positive regulation of defense response to bacterium	1.89E-03
65	GO:0009638: phototropism	1.89E-03
66	GO:0006779: porphyrin-containing compound biosynthetic process	1.89E-03
67	GO:0010380: regulation of chlorophyll biosynthetic process	1.89E-03
68	GO:0030048: actin filament-based movement	2.76E-03
69	GO:0010075: regulation of meristem growth	2.76E-03
70	GO:0009785: blue light signaling pathway	2.76E-03
71	GO:0006508: proteolysis	2.98E-03
72	GO:2000377: regulation of reactive oxygen species metabolic process	3.73E-03
73	GO:0005975: carbohydrate metabolic process	3.93E-03
74	GO:0006418: tRNA aminoacylation for protein translation	3.99E-03
75	GO:0003333: amino acid transmembrane transport	4.26E-03
76	GO:0006306: DNA methylation	4.26E-03
77	GO:0009451: RNA modification	4.58E-03
78	GO:0006470: protein dephosphorylation	5.11E-03
79	GO:0010118: stomatal movement	5.68E-03
80	GO:0042752: regulation of circadian rhythm	6.28E-03
81	GO:0009646: response to absence of light	6.28E-03
82	GO:0009658: chloroplast organization	6.91E-03
83	GO:0010029: regulation of seed germination	9.29E-03
84	GO:0018298: protein-chromophore linkage	1.08E-02
85	GO:0006811: ion transport	1.15E-02
86	GO:0010218: response to far red light	1.15E-02
87	GO:0009910: negative regulation of flower development	1.19E-02
88	GO:0006839: mitochondrial transport	1.39E-02
89	GO:0009640: photomorphogenesis	1.52E-02
90	GO:0010114: response to red light	1.52E-02
91	GO:0009644: response to high light intensity	1.61E-02
92	GO:0009965: leaf morphogenesis	1.65E-02
93	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
94	GO:0009909: regulation of flower development	2.02E-02
95	GO:0006417: regulation of translation	2.02E-02
96	GO:0000398: mRNA splicing, via spliceosome	2.68E-02
97	GO:0009793: embryo development ending in seed dormancy	2.90E-02
98	GO:0007623: circadian rhythm	3.57E-02
99	GO:0010228: vegetative to reproductive phase transition of meristem	3.68E-02
100	GO:0030154: cell differentiation	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
2	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
3	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
4	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
5	GO:0008170: N-methyltransferase activity	0.00E+00
6	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
7	GO:0070009: serine-type aminopeptidase activity	0.00E+00
8	GO:0009008: DNA-methyltransferase activity	0.00E+00
9	GO:0004325: ferrochelatase activity	6.74E-05
10	GO:0004121: cystathionine beta-lyase activity	6.74E-05
11	GO:0004485: methylcrotonoyl-CoA carboxylase activity	6.74E-05
12	GO:0004123: cystathionine gamma-lyase activity	6.74E-05
13	GO:0004831: tyrosine-tRNA ligase activity	6.74E-05
14	GO:0035241: protein-arginine omega-N monomethyltransferase activity	1.62E-04
15	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	1.62E-04
16	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	1.62E-04
17	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.62E-04
18	GO:0015929: hexosaminidase activity	1.62E-04
19	GO:0004563: beta-N-acetylhexosaminidase activity	1.62E-04
20	GO:0004176: ATP-dependent peptidase activity	2.30E-04
21	GO:0003962: cystathionine gamma-synthase activity	2.75E-04
22	GO:0004075: biotin carboxylase activity	2.75E-04
23	GO:0008469: histone-arginine N-methyltransferase activity	2.75E-04
24	GO:0004180: carboxypeptidase activity	2.75E-04
25	GO:0004848: ureidoglycolate hydrolase activity	2.75E-04
26	GO:0000339: RNA cap binding	3.98E-04
27	GO:0009882: blue light photoreceptor activity	3.98E-04
28	GO:0005253: anion channel activity	5.32E-04
29	GO:0008237: metallopeptidase activity	6.01E-04
30	GO:0005247: voltage-gated chloride channel activity	8.23E-04
31	GO:0004222: metalloendopeptidase activity	9.50E-04
32	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	9.79E-04
33	GO:0004559: alpha-mannosidase activity	9.79E-04
34	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.10E-03
35	GO:0071949: FAD binding	1.69E-03
36	GO:0015174: basic amino acid transmembrane transporter activity	1.89E-03
37	GO:0005315: inorganic phosphate transmembrane transporter activity	2.76E-03
38	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.99E-03
39	GO:0008514: organic anion transmembrane transporter activity	5.09E-03
40	GO:0004812: aminoacyl-tRNA ligase activity	5.38E-03
41	GO:0008080: N-acetyltransferase activity	5.98E-03
42	GO:0008168: methyltransferase activity	6.65E-03
43	GO:0008236: serine-type peptidase activity	1.04E-02
44	GO:0042803: protein homodimerization activity	1.08E-02
45	GO:0050897: cobalt ion binding	1.19E-02
46	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.35E-02
47	GO:0004519: endonuclease activity	1.38E-02
48	GO:0051539: 4 iron, 4 sulfur cluster binding	1.39E-02
49	GO:0003723: RNA binding	1.51E-02
50	GO:0004185: serine-type carboxypeptidase activity	1.52E-02
51	GO:0016887: ATPase activity	1.97E-02
52	GO:0015171: amino acid transmembrane transporter activity	2.02E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.89E-02
54	GO:0030246: carbohydrate binding	3.04E-02
55	GO:0030170: pyridoxal phosphate binding	3.05E-02
56	GO:0015144: carbohydrate transmembrane transporter activity	3.22E-02
57	GO:0005351: sugar:proton symporter activity	3.51E-02
58	GO:0005509: calcium ion binding	4.20E-02
59	GO:0042802: identical protein binding	4.23E-02
60	GO:0008270: zinc ion binding	4.40E-02
61	GO:0046982: protein heterodimerization activity	4.80E-02
62	GO:0003824: catalytic activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.59E-06
2	GO:0005845: mRNA cap binding complex	6.74E-05
3	GO:0005846: nuclear cap binding complex	1.62E-04
4	GO:0016605: PML body	2.75E-04
5	GO:0009536: plastid	6.01E-04
6	GO:0055035: plastid thylakoid membrane	6.73E-04
7	GO:0034707: chloride channel complex	8.23E-04
8	GO:0000123: histone acetyltransferase complex	1.14E-03
9	GO:0031969: chloroplast membrane	1.22E-03
10	GO:0046930: pore complex	1.50E-03
11	GO:0016604: nuclear body	1.89E-03
12	GO:0005773: vacuole	2.20E-03
13	GO:0042651: thylakoid membrane	3.99E-03
14	GO:0005743: mitochondrial inner membrane	1.18E-02
15	GO:0009505: plant-type cell wall	1.34E-02
16	GO:0009941: chloroplast envelope	2.16E-02
17	GO:0005654: nucleoplasm	2.78E-02
18	GO:0009535: chloroplast thylakoid membrane	2.79E-02
19	GO:0005623: cell	2.89E-02
20	GO:0005759: mitochondrial matrix	3.33E-02
21	GO:0005802: trans-Golgi network	3.61E-02
22	GO:0005622: intracellular	4.00E-02
23	GO:0005768: endosome	4.10E-02
24	GO:0046658: anchored component of plasma membrane	4.35E-02