Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12470

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042817: pyridoxal metabolic process0.00E+00
2GO:0015813: L-glutamate transport0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0098586: cellular response to virus0.00E+00
5GO:0017009: protein-phycocyanobilin linkage0.00E+00
6GO:0009658: chloroplast organization2.07E-07
7GO:0080005: photosystem stoichiometry adjustment6.16E-05
8GO:0048314: embryo sac morphogenesis6.16E-05
9GO:0050688: regulation of defense response to virus6.16E-05
10GO:0080183: response to photooxidative stress6.16E-05
11GO:0006739: NADP metabolic process6.16E-05
12GO:0046741: transport of virus in host, tissue to tissue6.16E-05
13GO:0042853: L-alanine catabolic process6.16E-05
14GO:0006435: threonyl-tRNA aminoacylation6.16E-05
15GO:0002230: positive regulation of defense response to virus by host1.09E-04
16GO:1901672: positive regulation of systemic acquired resistance1.09E-04
17GO:0008615: pyridoxine biosynthetic process1.62E-04
18GO:0051289: protein homotetramerization1.62E-04
19GO:0043572: plastid fission1.62E-04
20GO:0015729: oxaloacetate transport1.62E-04
21GO:0051607: defense response to virus1.70E-04
22GO:0009816: defense response to bacterium, incompatible interaction1.92E-04
23GO:0006734: NADH metabolic process2.21E-04
24GO:0019676: ammonia assimilation cycle2.21E-04
25GO:0015743: malate transport2.21E-04
26GO:0031935: regulation of chromatin silencing2.21E-04
27GO:0006282: regulation of DNA repair2.84E-04
28GO:0009616: virus induced gene silencing2.84E-04
29GO:0034052: positive regulation of plant-type hypersensitive response2.84E-04
30GO:0071423: malate transmembrane transport2.84E-04
31GO:0006656: phosphatidylcholine biosynthetic process2.84E-04
32GO:0009853: photorespiration3.05E-04
33GO:0010189: vitamin E biosynthetic process4.20E-04
34GO:0048528: post-embryonic root development4.92E-04
35GO:1900056: negative regulation of leaf senescence4.92E-04
36GO:0010050: vegetative phase change4.92E-04
37GO:0048564: photosystem I assembly5.68E-04
38GO:0032544: plastid translation6.45E-04
39GO:0009657: plastid organization6.45E-04
40GO:0000373: Group II intron splicing7.25E-04
41GO:0010267: production of ta-siRNAs involved in RNA interference8.07E-04
42GO:1900426: positive regulation of defense response to bacterium8.07E-04
43GO:0010380: regulation of chlorophyll biosynthetic process8.07E-04
44GO:0045036: protein targeting to chloroplast8.92E-04
45GO:0010207: photosystem II assembly1.25E-03
46GO:0010020: chloroplast fission1.25E-03
47GO:0019253: reductive pentose-phosphate cycle1.25E-03
48GO:0090351: seedling development1.35E-03
49GO:0010025: wax biosynthetic process1.45E-03
50GO:0051302: regulation of cell division1.65E-03
51GO:0051321: meiotic cell cycle1.76E-03
52GO:0006814: sodium ion transport2.57E-03
53GO:0008654: phospholipid biosynthetic process2.70E-03
54GO:0009791: post-embryonic development2.70E-03
55GO:0000302: response to reactive oxygen species2.82E-03
56GO:0031047: gene silencing by RNA2.95E-03
57GO:0010286: heat acclimation3.35E-03
58GO:0010027: thylakoid membrane organization3.63E-03
59GO:0015995: chlorophyll biosynthetic process4.05E-03
60GO:0007568: aging4.80E-03
61GO:0009910: negative regulation of flower development4.80E-03
62GO:0000724: double-strand break repair via homologous recombination4.95E-03
63GO:0010114: response to red light6.08E-03
64GO:0031347: regulation of defense response6.94E-03
65GO:0042538: hyperosmotic salinity response7.11E-03
66GO:0006364: rRNA processing7.47E-03
67GO:0006417: regulation of translation8.02E-03
68GO:0006096: glycolytic process8.40E-03
69GO:0009626: plant-type hypersensitive response8.77E-03
70GO:0016569: covalent chromatin modification9.16E-03
71GO:0009553: embryo sac development9.36E-03
72GO:0009624: response to nematode9.56E-03
73GO:0006396: RNA processing9.75E-03
74GO:0009058: biosynthetic process1.16E-02
75GO:0010228: vegetative to reproductive phase transition of meristem1.45E-02
76GO:0010468: regulation of gene expression1.59E-02
77GO:0046686: response to cadmium ion1.91E-02
78GO:0007049: cell cycle2.07E-02
79GO:0046777: protein autophosphorylation2.34E-02
80GO:0015979: photosynthesis2.45E-02
81GO:0009793: embryo development ending in seed dormancy2.83E-02
82GO:0032259: methylation2.86E-02
83GO:0006281: DNA repair2.95E-02
84GO:0006397: mRNA processing3.04E-02
85GO:0009735: response to cytokinin4.16E-02
86GO:0055114: oxidation-reduction process4.71E-02
87GO:0051301: cell division4.71E-02
88GO:0045893: positive regulation of transcription, DNA-templated4.89E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052857: NADPHX epimerase activity2.41E-05
4GO:0030941: chloroplast targeting sequence binding2.41E-05
5GO:0004733: pyridoxamine-phosphate oxidase activity2.41E-05
6GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.41E-05
7GO:0052856: NADHX epimerase activity2.41E-05
8GO:0004829: threonine-tRNA ligase activity6.16E-05
9GO:0000234: phosphoethanolamine N-methyltransferase activity6.16E-05
10GO:0004618: phosphoglycerate kinase activity6.16E-05
11GO:0015367: oxoglutarate:malate antiporter activity6.16E-05
12GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.09E-04
13GO:0015131: oxaloacetate transmembrane transporter activity1.62E-04
14GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.62E-04
15GO:0016851: magnesium chelatase activity1.62E-04
16GO:0051861: glycolipid binding2.21E-04
17GO:0008453: alanine-glyoxylate transaminase activity2.21E-04
18GO:0005313: L-glutamate transmembrane transporter activity2.21E-04
19GO:0004605: phosphatidate cytidylyltransferase activity3.51E-04
20GO:0015140: malate transmembrane transporter activity4.92E-04
21GO:0045309: protein phosphorylated amino acid binding8.07E-04
22GO:0019904: protein domain specific binding9.78E-04
23GO:0003727: single-stranded RNA binding2.10E-03
24GO:0010181: FMN binding2.57E-03
25GO:0048038: quinone binding2.82E-03
26GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.20E-03
27GO:0016887: ATPase activity5.26E-03
28GO:0043621: protein self-association6.42E-03
29GO:0016746: transferase activity, transferring acyl groups9.75E-03
30GO:0019843: rRNA binding1.12E-02
31GO:0016829: lyase activity1.18E-02
32GO:0030170: pyridoxal phosphate binding1.20E-02
33GO:0016491: oxidoreductase activity1.61E-02
34GO:0005515: protein binding2.21E-02
35GO:0003723: RNA binding2.52E-02
36GO:0004519: endonuclease activity3.13E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.15E-12
2GO:0009570: chloroplast stroma2.96E-06
3GO:0010007: magnesium chelatase complex1.09E-04
4GO:0009535: chloroplast thylakoid membrane1.46E-04
5GO:0009707: chloroplast outer membrane2.39E-04
6GO:0005655: nucleolar ribonuclease P complex4.20E-04
7GO:0031359: integral component of chloroplast outer membrane4.92E-04
8GO:0009706: chloroplast inner membrane7.36E-04
9GO:0048471: perinuclear region of cytoplasm9.78E-04
10GO:0009534: chloroplast thylakoid9.87E-04
11GO:0045271: respiratory chain complex I1.65E-03
12GO:0031969: chloroplast membrane2.32E-03
13GO:0009536: plastid2.42E-03
14GO:0009941: chloroplast envelope2.86E-03
15GO:0031966: mitochondrial membrane7.11E-03
16GO:0009579: thylakoid7.19E-03
17GO:0005747: mitochondrial respiratory chain complex I8.59E-03
18GO:0005777: peroxisome4.89E-02
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Gene type



Gene DE type