co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G12210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006721: terpenoid metabolic process	0.00E+00
2	GO:0006069: ethanol oxidation	0.00E+00
3	GO:0006720: isoprenoid metabolic process	0.00E+00
4	GO:0006592: ornithine biosynthetic process	0.00E+00
5	GO:0048870: cell motility	0.00E+00
6	GO:0032780: negative regulation of ATPase activity	0.00E+00
7	GO:0051776: detection of redox state	0.00E+00
8	GO:0016487: farnesol metabolic process	0.00E+00
9	GO:0071284: cellular response to lead ion	0.00E+00
10	GO:0046292: formaldehyde metabolic process	0.00E+00
11	GO:0016093: polyprenol metabolic process	0.00E+00
12	GO:0019509: L-methionine salvage from methylthioadenosine	1.95E-06
13	GO:0006555: methionine metabolic process	9.77E-05
14	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.34E-04
15	GO:0050790: regulation of catalytic activity	1.77E-04
16	GO:0015991: ATP hydrolysis coupled proton transport	1.78E-04
17	GO:0031468: nuclear envelope reassembly	2.46E-04
18	GO:0009240: isopentenyl diphosphate biosynthetic process	2.46E-04
19	GO:0055114: oxidation-reduction process	3.60E-04
20	GO:0043255: regulation of carbohydrate biosynthetic process	5.44E-04
21	GO:0019483: beta-alanine biosynthetic process	5.44E-04
22	GO:0007163: establishment or maintenance of cell polarity	5.44E-04
23	GO:0051252: regulation of RNA metabolic process	5.44E-04
24	GO:0019441: tryptophan catabolic process to kynurenine	5.44E-04
25	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.44E-04
26	GO:0046939: nucleotide phosphorylation	5.44E-04
27	GO:0006212: uracil catabolic process	5.44E-04
28	GO:0008333: endosome to lysosome transport	8.83E-04
29	GO:0043617: cellular response to sucrose starvation	8.83E-04
30	GO:0046417: chorismate metabolic process	8.83E-04
31	GO:0015940: pantothenate biosynthetic process	8.83E-04
32	GO:0006760: folic acid-containing compound metabolic process	8.83E-04
33	GO:0006487: protein N-linked glycosylation	1.08E-03
34	GO:0006516: glycoprotein catabolic process	1.26E-03
35	GO:1901332: negative regulation of lateral root development	1.26E-03
36	GO:0006107: oxaloacetate metabolic process	1.26E-03
37	GO:0006012: galactose metabolic process	1.55E-03
38	GO:0000003: reproduction	1.68E-03
39	GO:0010109: regulation of photosynthesis	1.68E-03
40	GO:0015976: carbon utilization	1.68E-03
41	GO:0010387: COP9 signalosome assembly	1.68E-03
42	GO:0071249: cellular response to nitrate	1.68E-03
43	GO:0051603: proteolysis involved in cellular protein catabolic process	1.70E-03
44	GO:0030041: actin filament polymerization	2.15E-03
45	GO:0009229: thiamine diphosphate biosynthetic process	2.15E-03
46	GO:0007035: vacuolar acidification	2.65E-03
47	GO:0009228: thiamine biosynthetic process	2.65E-03
48	GO:0009117: nucleotide metabolic process	2.65E-03
49	GO:0010090: trichome morphogenesis	2.97E-03
50	GO:1901001: negative regulation of response to salt stress	3.18E-03
51	GO:0045454: cell redox homeostasis	3.32E-03
52	GO:0000338: protein deneddylation	3.75E-03
53	GO:0006506: GPI anchor biosynthetic process	4.35E-03
54	GO:0000028: ribosomal small subunit assembly	4.35E-03
55	GO:0045010: actin nucleation	4.35E-03
56	GO:0006526: arginine biosynthetic process	4.98E-03
57	GO:0043562: cellular response to nitrogen levels	4.98E-03
58	GO:0010099: regulation of photomorphogenesis	4.98E-03
59	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	4.98E-03
60	GO:0006754: ATP biosynthetic process	5.65E-03
61	GO:0000902: cell morphogenesis	5.65E-03
62	GO:0046685: response to arsenic-containing substance	5.65E-03
63	GO:0048527: lateral root development	5.67E-03
64	GO:0009853: photorespiration	6.21E-03
65	GO:0006099: tricarboxylic acid cycle	6.50E-03
66	GO:0000103: sulfate assimilation	7.06E-03
67	GO:0043069: negative regulation of programmed cell death	7.06E-03
68	GO:0045036: protein targeting to chloroplast	7.06E-03
69	GO:0006896: Golgi to vacuole transport	7.06E-03
70	GO:0009073: aromatic amino acid family biosynthetic process	7.80E-03
71	GO:0006378: mRNA polyadenylation	7.80E-03
72	GO:0010015: root morphogenesis	7.80E-03
73	GO:0009826: unidimensional cell growth	8.50E-03
74	GO:0010152: pollen maturation	8.58E-03
75	GO:0006807: nitrogen compound metabolic process	9.38E-03
76	GO:0009691: cytokinin biosynthetic process	9.38E-03
77	GO:0006108: malate metabolic process	9.38E-03
78	GO:0006829: zinc II ion transport	9.38E-03
79	GO:0006508: proteolysis	9.64E-03
80	GO:0006970: response to osmotic stress	9.81E-03
81	GO:0007034: vacuolar transport	1.02E-02
82	GO:0048440: carpel development	1.02E-02
83	GO:0002237: response to molecule of bacterial origin	1.02E-02
84	GO:0009585: red, far-red light phototransduction	1.08E-02
85	GO:0007030: Golgi organization	1.11E-02
86	GO:0035556: intracellular signal transduction	1.18E-02
87	GO:0042753: positive regulation of circadian rhythm	1.20E-02
88	GO:2000377: regulation of reactive oxygen species metabolic process	1.29E-02
89	GO:0009116: nucleoside metabolic process	1.29E-02
90	GO:0051302: regulation of cell division	1.38E-02
91	GO:0019953: sexual reproduction	1.38E-02
92	GO:0008299: isoprenoid biosynthetic process	1.38E-02
93	GO:0010431: seed maturation	1.47E-02
94	GO:0006886: intracellular protein transport	1.54E-02
95	GO:0016226: iron-sulfur cluster assembly	1.57E-02
96	GO:0019748: secondary metabolic process	1.57E-02
97	GO:0001944: vasculature development	1.67E-02
98	GO:0048443: stamen development	1.77E-02
99	GO:0042147: retrograde transport, endosome to Golgi	1.88E-02
100	GO:0080022: primary root development	1.99E-02
101	GO:0005975: carbohydrate metabolic process	2.01E-02
102	GO:0008360: regulation of cell shape	2.09E-02
103	GO:0006662: glycerol ether metabolic process	2.09E-02
104	GO:0046686: response to cadmium ion	2.10E-02
105	GO:0015986: ATP synthesis coupled proton transport	2.21E-02
106	GO:0061025: membrane fusion	2.21E-02
107	GO:0009646: response to absence of light	2.21E-02
108	GO:0008654: phospholipid biosynthetic process	2.32E-02
109	GO:0006623: protein targeting to vacuole	2.32E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
111	GO:0006914: autophagy	2.79E-02
112	GO:0009828: plant-type cell wall loosening	2.79E-02
113	GO:0010286: heat acclimation	2.91E-02
114	GO:0009651: response to salt stress	3.01E-02
115	GO:0006979: response to oxidative stress	3.16E-02
116	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.29E-02
117	GO:0048573: photoperiodism, flowering	3.55E-02
118	GO:0006950: response to stress	3.55E-02
119	GO:0015995: chlorophyll biosynthetic process	3.55E-02
120	GO:0008219: cell death	3.82E-02
121	GO:0010311: lateral root formation	3.96E-02
122	GO:0006811: ion transport	4.10E-02
123	GO:0006499: N-terminal protein myristoylation	4.10E-02
124	GO:0010043: response to zinc ion	4.24E-02
125	GO:0015031: protein transport	4.42E-02
126	GO:0034599: cellular response to oxidative stress	4.66E-02
127	GO:0030001: metal ion transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
2	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
3	GO:0050334: thiaminase activity	0.00E+00
4	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
5	GO:0047886: farnesol dehydrogenase activity	0.00E+00
6	GO:0004157: dihydropyrimidinase activity	0.00E+00
7	GO:0008777: acetylornithine deacetylase activity	0.00E+00
8	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
9	GO:0042030: ATPase inhibitor activity	0.00E+00
10	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
11	GO:0052670: geraniol kinase activity	0.00E+00
12	GO:0052668: farnesol kinase activity	0.00E+00
13	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
14	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
15	GO:0050152: omega-amidase activity	0.00E+00
16	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
17	GO:0052671: geranylgeraniol kinase activity	0.00E+00
18	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.02E-05
19	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.31E-05
20	GO:0016853: isomerase activity	2.20E-04
21	GO:0004034: aldose 1-epimerase activity	2.25E-04
22	GO:0010209: vacuolar sorting signal binding	2.46E-04
23	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.46E-04
24	GO:0019707: protein-cysteine S-acyltransferase activity	2.46E-04
25	GO:0030611: arsenate reductase activity	2.46E-04
26	GO:0008782: adenosylhomocysteine nucleosidase activity	2.46E-04
27	GO:0030941: chloroplast targeting sequence binding	2.46E-04
28	GO:0008930: methylthioadenosine nucleosidase activity	2.46E-04
29	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2.46E-04
30	GO:0004560: alpha-L-fucosidase activity	2.46E-04
31	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.46E-04
32	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.46E-04
33	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.66E-04
34	GO:0015078: hydrogen ion transmembrane transporter activity	2.78E-04
35	GO:0016787: hydrolase activity	4.77E-04
36	GO:0008794: arsenate reductase (glutaredoxin) activity	5.39E-04
37	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.39E-04
38	GO:0008428: ribonuclease inhibitor activity	5.44E-04
39	GO:0004106: chorismate mutase activity	5.44E-04
40	GO:0004061: arylformamidase activity	5.44E-04
41	GO:0019172: glyoxalase III activity	5.44E-04
42	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	5.44E-04
43	GO:0004557: alpha-galactosidase activity	8.83E-04
44	GO:0032403: protein complex binding	8.83E-04
45	GO:0016805: dipeptidase activity	8.83E-04
46	GO:0052692: raffinose alpha-galactosidase activity	8.83E-04
47	GO:0035529: NADH pyrophosphatase activity	1.26E-03
48	GO:0019201: nucleotide kinase activity	1.26E-03
49	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.68E-03
50	GO:0004576: oligosaccharyl transferase activity	1.68E-03
51	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.68E-03
52	GO:0010011: auxin binding	1.68E-03
53	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.15E-03
54	GO:0016407: acetyltransferase activity	2.15E-03
55	GO:0008948: oxaloacetate decarboxylase activity	2.15E-03
56	GO:0051117: ATPase binding	2.65E-03
57	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.65E-03
58	GO:0004605: phosphatidate cytidylyltransferase activity	2.65E-03
59	GO:0004197: cysteine-type endopeptidase activity	2.78E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-03
61	GO:0004017: adenylate kinase activity	3.18E-03
62	GO:0019887: protein kinase regulator activity	3.18E-03
63	GO:0051920: peroxiredoxin activity	3.18E-03
64	GO:0070300: phosphatidic acid binding	3.18E-03
65	GO:0008320: protein transmembrane transporter activity	3.75E-03
66	GO:0008235: metalloexopeptidase activity	3.75E-03
67	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.35E-03
68	GO:0016209: antioxidant activity	4.35E-03
69	GO:0003843: 1,3-beta-D-glucan synthase activity	4.98E-03
70	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.65E-03
71	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.65E-03
72	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.65E-03
73	GO:0050897: cobalt ion binding	5.67E-03
74	GO:0045309: protein phosphorylated amino acid binding	6.33E-03
75	GO:0047617: acyl-CoA hydrolase activity	6.33E-03
76	GO:0019904: protein domain specific binding	7.80E-03
77	GO:0004177: aminopeptidase activity	7.80E-03
78	GO:0004129: cytochrome-c oxidase activity	7.80E-03
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.36E-03
80	GO:0004022: alcohol dehydrogenase (NAD) activity	9.38E-03
81	GO:0004089: carbonate dehydratase activity	9.38E-03
82	GO:0003824: catalytic activity	1.15E-02
83	GO:0008234: cysteine-type peptidase activity	1.20E-02
84	GO:0004725: protein tyrosine phosphatase activity	1.20E-02
85	GO:0051536: iron-sulfur cluster binding	1.29E-02
86	GO:0043130: ubiquitin binding	1.29E-02
87	GO:0005528: FK506 binding	1.29E-02
88	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.32E-02
89	GO:0022857: transmembrane transporter activity	1.45E-02
90	GO:0004298: threonine-type endopeptidase activity	1.47E-02
91	GO:0015035: protein disulfide oxidoreductase activity	1.59E-02
92	GO:0016746: transferase activity, transferring acyl groups	1.59E-02
93	GO:0047134: protein-disulfide reductase activity	1.88E-02
94	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.09E-02
95	GO:0004527: exonuclease activity	2.09E-02
96	GO:0046873: metal ion transmembrane transporter activity	2.09E-02
97	GO:0050662: coenzyme binding	2.21E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	2.21E-02
99	GO:0046872: metal ion binding	2.44E-02
100	GO:0008237: metallopeptidase activity	2.91E-02
101	GO:0005506: iron ion binding	3.05E-02
102	GO:0051213: dioxygenase activity	3.16E-02
103	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.42E-02
104	GO:0004683: calmodulin-dependent protein kinase activity	3.55E-02
105	GO:0004222: metalloendopeptidase activity	4.10E-02
106	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02
107	GO:0030145: manganese ion binding	4.24E-02
108	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain	0.00E+00
2	GO:0005747: mitochondrial respiratory chain complex I	3.62E-09
3	GO:0005773: vacuole	4.06E-06
4	GO:0005829: cytosol	2.63E-05
5	GO:0033179: proton-transporting V-type ATPase, V0 domain	4.19E-05
6	GO:0045273: respiratory chain complex II	2.25E-04
7	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.25E-04
8	GO:0005764: lysosome	7.88E-04
9	GO:0005838: proteasome regulatory particle	8.83E-04
10	GO:0045271: respiratory chain complex I	1.19E-03
11	GO:0005956: protein kinase CK2 complex	1.26E-03
12	GO:0005849: mRNA cleavage factor complex	1.26E-03
13	GO:0009507: chloroplast	1.47E-03
14	GO:0005783: endoplasmic reticulum	1.61E-03
15	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.68E-03
16	GO:0008250: oligosaccharyltransferase complex	2.15E-03
17	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.15E-03
18	GO:0005746: mitochondrial respiratory chain	2.15E-03
19	GO:0031209: SCAR complex	2.65E-03
20	GO:0005771: multivesicular body	2.65E-03
21	GO:0030904: retromer complex	2.65E-03
22	GO:0009840: chloroplastic endopeptidase Clp complex	3.18E-03
23	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.75E-03
24	GO:0031359: integral component of chloroplast outer membrane	3.75E-03
25	GO:0000421: autophagosome membrane	4.35E-03
26	GO:0005759: mitochondrial matrix	4.54E-03
27	GO:0005774: vacuolar membrane	4.62E-03
28	GO:0000148: 1,3-beta-D-glucan synthase complex	4.98E-03
29	GO:0008180: COP9 signalosome	5.65E-03
30	GO:0005763: mitochondrial small ribosomal subunit	5.65E-03
31	GO:0030665: clathrin-coated vesicle membrane	6.33E-03
32	GO:0005789: endoplasmic reticulum membrane	6.70E-03
33	GO:0017119: Golgi transport complex	7.06E-03
34	GO:0031902: late endosome membrane	7.39E-03
35	GO:0005765: lysosomal membrane	7.80E-03
36	GO:0031966: mitochondrial membrane	1.01E-02
37	GO:0005750: mitochondrial respiratory chain complex III	1.02E-02
38	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.11E-02
39	GO:0031969: chloroplast membrane	1.17E-02
40	GO:0005875: microtubule associated complex	1.20E-02
41	GO:0005758: mitochondrial intermembrane space	1.29E-02
42	GO:0070469: respiratory chain	1.38E-02
43	GO:0009532: plastid stroma	1.47E-02
44	GO:0005839: proteasome core complex	1.47E-02
45	GO:0031410: cytoplasmic vesicle	1.57E-02
46	GO:0005770: late endosome	2.09E-02
47	GO:0005737: cytoplasm	2.27E-02
48	GO:0005794: Golgi apparatus	2.32E-02
49	GO:0009504: cell plate	2.32E-02
50	GO:0071944: cell periphery	2.67E-02
51	GO:0032580: Golgi cisterna membrane	2.79E-02
52	GO:0005615: extracellular space	2.99E-02
53	GO:0005643: nuclear pore	3.82E-02
54	GO:0000325: plant-type vacuole	4.24E-02
55	GO:0009570: chloroplast stroma	4.58E-02
56	GO:0005777: peroxisome	4.66E-02