Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
2GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine0.00E+00
3GO:0008298: intracellular mRNA localization0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0080005: photosystem stoichiometry adjustment4.30E-08
6GO:0006013: mannose metabolic process1.68E-07
7GO:0018298: protein-chromophore linkage5.99E-06
8GO:0019346: transsulfuration2.41E-05
9GO:0019343: cysteine biosynthetic process via cystathionine2.41E-05
10GO:1904966: positive regulation of vitamin E biosynthetic process2.41E-05
11GO:1904964: positive regulation of phytol biosynthetic process2.41E-05
12GO:0071461: cellular response to redox state2.41E-05
13GO:0010362: negative regulation of anion channel activity by blue light2.41E-05
14GO:0071266: 'de novo' L-methionine biosynthetic process2.41E-05
15GO:0080183: response to photooxidative stress6.16E-05
16GO:1902326: positive regulation of chlorophyll biosynthetic process6.16E-05
17GO:0002230: positive regulation of defense response to virus by host1.09E-04
18GO:1901672: positive regulation of systemic acquired resistance1.09E-04
19GO:0006696: ergosterol biosynthetic process1.09E-04
20GO:2001141: regulation of RNA biosynthetic process1.62E-04
21GO:0009816: defense response to bacterium, incompatible interaction1.92E-04
22GO:0015995: chlorophyll biosynthetic process2.15E-04
23GO:0009902: chloroplast relocation2.21E-04
24GO:0031935: regulation of chromatin silencing2.21E-04
25GO:0015979: photosynthesis2.72E-04
26GO:0006282: regulation of DNA repair2.84E-04
27GO:0034052: positive regulation of plant-type hypersensitive response2.84E-04
28GO:0009228: thiamine biosynthetic process3.51E-04
29GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.51E-04
30GO:0048528: post-embryonic root development4.92E-04
31GO:0048564: photosystem I assembly5.68E-04
32GO:0009657: plastid organization6.45E-04
33GO:0071482: cellular response to light stimulus6.45E-04
34GO:0009735: response to cytokinin7.01E-04
35GO:1900426: positive regulation of defense response to bacterium8.07E-04
36GO:0009638: phototropism8.07E-04
37GO:0045036: protein targeting to chloroplast8.92E-04
38GO:0006352: DNA-templated transcription, initiation9.78E-04
39GO:0007623: circadian rhythm1.23E-03
40GO:0010207: photosystem II assembly1.25E-03
41GO:0016114: terpenoid biosynthetic process1.76E-03
42GO:0009658: chloroplast organization1.88E-03
43GO:0016117: carotenoid biosynthetic process2.21E-03
44GO:0010118: stomatal movement2.33E-03
45GO:0046777: protein autophosphorylation2.48E-03
46GO:0009791: post-embryonic development2.70E-03
47GO:0031047: gene silencing by RNA2.95E-03
48GO:0010286: heat acclimation3.35E-03
49GO:0006281: DNA repair3.41E-03
50GO:0051607: defense response to virus3.49E-03
51GO:0000160: phosphorelay signal transduction system4.49E-03
52GO:0007568: aging4.80E-03
53GO:0009637: response to blue light5.11E-03
54GO:0010114: response to red light6.08E-03
55GO:0009744: response to sucrose6.08E-03
56GO:0035556: intracellular signal transduction6.35E-03
57GO:0009644: response to high light intensity6.42E-03
58GO:0042538: hyperosmotic salinity response7.11E-03
59GO:0055085: transmembrane transport7.63E-03
60GO:0006417: regulation of translation8.02E-03
61GO:0009626: plant-type hypersensitive response8.77E-03
62GO:0016569: covalent chromatin modification9.16E-03
63GO:0006396: RNA processing9.75E-03
64GO:0010228: vegetative to reproductive phase transition of meristem1.45E-02
65GO:0010468: regulation of gene expression1.59E-02
66GO:0006397: mRNA processing3.04E-02
67GO:0008152: metabolic process3.16E-02
68GO:0009416: response to light stimulus4.43E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0004559: alpha-mannosidase activity3.17E-06
4GO:0004121: cystathionine beta-lyase activity2.41E-05
5GO:0051996: squalene synthase activity2.41E-05
6GO:0030941: chloroplast targeting sequence binding2.41E-05
7GO:0004123: cystathionine gamma-lyase activity2.41E-05
8GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.16E-05
9GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.16E-05
10GO:0022891: substrate-specific transmembrane transporter activity6.70E-05
11GO:0003962: cystathionine gamma-synthase activity1.09E-04
12GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.09E-04
13GO:0003913: DNA photolyase activity1.09E-04
14GO:0016851: magnesium chelatase activity1.62E-04
15GO:0009882: blue light photoreceptor activity1.62E-04
16GO:0016168: chlorophyll binding1.92E-04
17GO:0043495: protein anchor2.21E-04
18GO:0001053: plastid sigma factor activity2.21E-04
19GO:0051861: glycolipid binding2.21E-04
20GO:0016987: sigma factor activity2.21E-04
21GO:0019899: enzyme binding4.92E-04
22GO:0045309: protein phosphorylated amino acid binding8.07E-04
23GO:0019904: protein domain specific binding9.78E-04
24GO:0000155: phosphorelay sensor kinase activity1.16E-03
25GO:0042802: identical protein binding1.56E-03
26GO:0003727: single-stranded RNA binding2.10E-03
27GO:0008080: N-acetyltransferase activity2.45E-03
28GO:0010181: FMN binding2.57E-03
29GO:0048038: quinone binding2.82E-03
30GO:0016597: amino acid binding3.49E-03
31GO:0016887: ATPase activity5.26E-03
32GO:0043621: protein self-association6.42E-03
33GO:0003899: DNA-directed 5'-3' RNA polymerase activity7.47E-03
34GO:0030246: carbohydrate binding8.09E-03
35GO:0005515: protein binding8.30E-03
36GO:0016746: transferase activity, transferring acyl groups9.75E-03
37GO:0030170: pyridoxal phosphate binding1.20E-02
38GO:0005506: iron ion binding1.20E-02
39GO:0004519: endonuclease activity3.13E-02
40GO:0005524: ATP binding3.24E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast7.84E-11
2GO:0009535: chloroplast thylakoid membrane9.62E-07
3GO:0009570: chloroplast stroma2.96E-06
4GO:0009941: chloroplast envelope9.84E-05
5GO:0010007: magnesium chelatase complex1.09E-04
6GO:0009523: photosystem II1.13E-04
7GO:0031969: chloroplast membrane2.28E-04
8GO:0031359: integral component of chloroplast outer membrane4.92E-04
9GO:0009706: chloroplast inner membrane7.36E-04
10GO:0042651: thylakoid membrane1.65E-03
11GO:0010319: stromule3.35E-03
12GO:0009707: chloroplast outer membrane4.34E-03
13GO:0031977: thylakoid lumen5.75E-03
14GO:0031966: mitochondrial membrane7.11E-03
15GO:0009534: chloroplast thylakoid7.26E-03
16GO:0005774: vacuolar membrane9.02E-03
17GO:0010287: plastoglobule1.08E-02
18GO:0009543: chloroplast thylakoid lumen1.12E-02
19GO:0009536: plastid1.50E-02
20GO:0009505: plant-type cell wall1.53E-02
21GO:0005618: cell wall4.83E-02
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Gene type



Gene DE type