co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G11240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
2	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
3	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0070476: rRNA (guanine-N7)-methylation	0.00E+00
5	GO:0044237: cellular metabolic process	0.00E+00
6	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
7	GO:0043928: exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	0.00E+00
8	GO:0071035: nuclear polyadenylation-dependent rRNA catabolic process	0.00E+00
9	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
10	GO:0071038: nuclear polyadenylation-dependent tRNA catabolic process	0.00E+00
11	GO:0071034: CUT catabolic process	0.00E+00
12	GO:0008612: peptidyl-lysine modification to peptidyl-hypusine	0.00E+00
13	GO:0000467: exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
14	GO:0071049: nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription	0.00E+00
15	GO:0071731: response to nitric oxide	0.00E+00
16	GO:0039694: viral RNA genome replication	0.00E+00
17	GO:0090069: regulation of ribosome biogenesis	0.00E+00
18	GO:1902184: negative regulation of shoot apical meristem development	0.00E+00
19	GO:0006364: rRNA processing	4.32E-16
20	GO:0010501: RNA secondary structure unwinding	3.82E-10
21	GO:0009553: embryo sac development	3.14E-07
22	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.20E-07
23	GO:0000460: maturation of 5.8S rRNA	1.71E-05
24	GO:0042254: ribosome biogenesis	8.34E-05
25	GO:2000232: regulation of rRNA processing	1.46E-04
26	GO:0043985: histone H4-R3 methylation	1.46E-04
27	GO:0031120: snRNA pseudouridine synthesis	1.46E-04
28	GO:0000469: cleavage involved in rRNA processing	1.46E-04
29	GO:0031118: rRNA pseudouridine synthesis	1.46E-04
30	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.46E-04
31	GO:0006430: lysyl-tRNA aminoacylation	1.46E-04
32	GO:0030490: maturation of SSU-rRNA	1.46E-04
33	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.46E-04
34	GO:1902182: shoot apical meristem development	1.46E-04
35	GO:0009451: RNA modification	3.11E-04
36	GO:0006610: ribosomal protein import into nucleus	3.33E-04
37	GO:0080009: mRNA methylation	3.33E-04
38	GO:0045041: protein import into mitochondrial intermembrane space	3.33E-04
39	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	3.33E-04
40	GO:0060149: negative regulation of posttranscriptional gene silencing	3.33E-04
41	GO:0034470: ncRNA processing	3.33E-04
42	GO:0034475: U4 snRNA 3'-end processing	3.33E-04
43	GO:0045604: regulation of epidermal cell differentiation	5.47E-04
44	GO:0042780: tRNA 3'-end processing	5.47E-04
45	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	5.47E-04
46	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	5.47E-04
47	GO:0007005: mitochondrion organization	7.02E-04
48	GO:0051131: chaperone-mediated protein complex assembly	7.83E-04
49	GO:0007276: gamete generation	7.83E-04
50	GO:0009561: megagametogenesis	8.29E-04
51	GO:0006479: protein methylation	1.04E-03
52	GO:1900864: mitochondrial RNA modification	1.04E-03
53	GO:0042273: ribosomal large subunit biogenesis	1.04E-03
54	GO:0000060: protein import into nucleus, translocation	1.61E-03
55	GO:0000470: maturation of LSU-rRNA	1.61E-03
56	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.61E-03
57	GO:0006413: translational initiation	1.83E-03
58	GO:0042026: protein refolding	1.93E-03
59	GO:0006458: 'de novo' protein folding	1.93E-03
60	GO:0048444: floral organ morphogenesis	1.93E-03
61	GO:0010077: maintenance of inflorescence meristem identity	1.93E-03
62	GO:0006400: tRNA modification	2.27E-03
63	GO:0045995: regulation of embryonic development	2.27E-03
64	GO:0042255: ribosome assembly	2.63E-03
65	GO:0001522: pseudouridine synthesis	2.63E-03
66	GO:0000028: ribosomal small subunit assembly	2.63E-03
67	GO:0009880: embryonic pattern specification	3.00E-03
68	GO:2000024: regulation of leaf development	3.40E-03
69	GO:0000373: Group II intron splicing	3.40E-03
70	GO:0006607: NLS-bearing protein import into nucleus	3.40E-03
71	GO:0006349: regulation of gene expression by genetic imprinting	3.81E-03
72	GO:1900865: chloroplast RNA modification	3.81E-03
73	GO:0051301: cell division	4.01E-03
74	GO:0010162: seed dormancy process	4.23E-03
75	GO:0010582: floral meristem determinacy	5.13E-03
76	GO:0046686: response to cadmium ion	5.76E-03
77	GO:0010030: positive regulation of seed germination	6.59E-03
78	GO:0016569: covalent chromatin modification	6.89E-03
79	GO:0032259: methylation	7.08E-03
80	GO:0006396: RNA processing	7.54E-03
81	GO:0009944: polarity specification of adaxial/abaxial axis	7.63E-03
82	GO:0051302: regulation of cell division	8.18E-03
83	GO:0061077: chaperone-mediated protein folding	8.73E-03
84	GO:0009294: DNA mediated transformation	9.89E-03
85	GO:0009793: embryo development ending in seed dormancy	1.15E-02
86	GO:0000413: protein peptidyl-prolyl isomerization	1.17E-02
87	GO:0006606: protein import into nucleus	1.17E-02
88	GO:0006342: chromatin silencing	1.24E-02
89	GO:0009960: endosperm development	1.24E-02
90	GO:0048825: cotyledon development	1.37E-02
91	GO:0006457: protein folding	2.15E-02
92	GO:0016049: cell growth	2.17E-02
93	GO:0048527: lateral root development	2.49E-02
94	GO:0045892: negative regulation of transcription, DNA-templated	2.97E-02
95	GO:0000154: rRNA modification	3.47E-02
96	GO:0006260: DNA replication	3.65E-02
97	GO:0009909: regulation of flower development	4.24E-02
98	GO:0006417: regulation of translation	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:0016435: rRNA (guanine) methyltransferase activity	0.00E+00
2	GO:0034038: deoxyhypusine synthase activity	0.00E+00
3	GO:0016018: cyclosporin A binding	0.00E+00
4	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
5	GO:0004164: diphthine synthase activity	0.00E+00
6	GO:0003723: RNA binding	4.20E-20
7	GO:0000166: nucleotide binding	6.24E-14
8	GO:0008026: ATP-dependent helicase activity	1.07E-11
9	GO:0004004: ATP-dependent RNA helicase activity	1.05E-10
10	GO:0030515: snoRNA binding	8.51E-07
11	GO:0043021: ribonucleoprotein complex binding	1.05E-06
12	GO:0001054: RNA polymerase I activity	6.50E-06
13	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.21E-05
14	GO:0004824: lysine-tRNA ligase activity	1.46E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.46E-04
16	GO:0004519: endonuclease activity	3.21E-04
17	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	3.33E-04
18	GO:0004407: histone deacetylase activity	5.33E-04
19	GO:0042781: 3'-tRNA processing endoribonuclease activity	5.47E-04
20	GO:0070181: small ribosomal subunit rRNA binding	5.47E-04
21	GO:0008168: methyltransferase activity	5.61E-04
22	GO:0004527: exonuclease activity	1.03E-03
23	GO:0031369: translation initiation factor binding	1.61E-03
24	GO:0003743: translation initiation factor activity	2.43E-03
25	GO:0003746: translation elongation factor activity	2.98E-03
26	GO:0008173: RNA methyltransferase activity	3.00E-03
27	GO:0003676: nucleic acid binding	3.58E-03
28	GO:0044183: protein binding involved in protein folding	4.67E-03
29	GO:0004521: endoribonuclease activity	5.13E-03
30	GO:0001056: RNA polymerase III activity	5.13E-03
31	GO:0003729: mRNA binding	5.32E-03
32	GO:0008139: nuclear localization sequence binding	5.60E-03
33	GO:0009982: pseudouridine synthase activity	5.60E-03
34	GO:0003887: DNA-directed DNA polymerase activity	7.10E-03
35	GO:0051082: unfolded protein binding	7.32E-03
36	GO:0043130: ubiquitin binding	7.63E-03
37	GO:0005524: ATP binding	7.83E-03
38	GO:0004386: helicase activity	7.99E-03
39	GO:0016787: hydrolase activity	1.00E-02
40	GO:0003713: transcription coactivator activity	1.24E-02
41	GO:0008536: Ran GTPase binding	1.24E-02
42	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.17E-02
43	GO:0050897: cobalt ion binding	2.49E-02
44	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.75E-02
45	GO:0005525: GTP binding	2.90E-02
46	GO:0042393: histone binding	2.92E-02
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.56E-02
48	GO:0003924: GTPase activity	3.60E-02

Rank	GO Term	Adjusted P value
1	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
2	GO:0036396: MIS complex	0.00E+00
3	GO:0019034: viral replication complex	0.00E+00
4	GO:0070545: PeBoW complex	0.00E+00
5	GO:0005730: nucleolus	8.07E-35
6	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.47E-11
7	GO:0032040: small-subunit processome	8.21E-10
8	GO:0005634: nucleus	8.50E-09
9	GO:0030687: preribosome, large subunit precursor	8.51E-07
10	GO:0005736: DNA-directed RNA polymerase I complex	2.73E-06
11	GO:0005834: heterotrimeric G-protein complex	5.90E-06
12	GO:0034399: nuclear periphery	1.02E-04
13	GO:0030688: preribosome, small subunit precursor	1.46E-04
14	GO:0005654: nucleoplasm	1.68E-04
15	GO:0000177: cytoplasmic exosome (RNase complex)	3.33E-04
16	GO:0043234: protein complex	4.81E-04
17	GO:0000176: nuclear exosome (RNase complex)	5.47E-04
18	GO:0031429: box H/ACA snoRNP complex	7.83E-04
19	GO:0031428: box C/D snoRNP complex	1.61E-03
20	GO:0005851: eukaryotic translation initiation factor 2B complex	1.61E-03
21	GO:0005759: mitochondrial matrix	1.77E-03
22	GO:0005763: mitochondrial small ribosomal subunit	3.40E-03
23	GO:0005666: DNA-directed RNA polymerase III complex	3.81E-03
24	GO:0005852: eukaryotic translation initiation factor 3 complex	4.67E-03
25	GO:0015935: small ribosomal subunit	8.73E-03
26	GO:0005829: cytosol	9.57E-03
27	GO:0005618: cell wall	9.94E-03
28	GO:0031965: nuclear membrane	1.37E-02
29	GO:0019898: extrinsic component of membrane	1.37E-02
30	GO:0009506: plasmodesma	1.78E-02
31	GO:0030529: intracellular ribonucleoprotein complex	1.86E-02
32	GO:0005643: nuclear pore	2.25E-02
33	GO:0015934: large ribosomal subunit	2.49E-02
34	GO:0005747: mitochondrial respiratory chain complex I	4.54E-02
35	GO:0016607: nuclear speck	4.54E-02