co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0018026: peptidyl-lysine monomethylation	3.86E-07
7	GO:0009773: photosynthetic electron transport in photosystem I	1.78E-06
8	GO:0042549: photosystem II stabilization	1.70E-05
9	GO:0015979: photosynthesis	3.29E-05
10	GO:0010027: thylakoid membrane organization	5.40E-05
11	GO:0000476: maturation of 4.5S rRNA	8.43E-05
12	GO:0000967: rRNA 5'-end processing	8.43E-05
13	GO:0042371: vitamin K biosynthetic process	8.43E-05
14	GO:0065002: intracellular protein transmembrane transport	8.43E-05
15	GO:0046167: glycerol-3-phosphate biosynthetic process	8.43E-05
16	GO:0043007: maintenance of rDNA	8.43E-05
17	GO:0043953: protein transport by the Tat complex	8.43E-05
18	GO:0080181: lateral root branching	2.00E-04
19	GO:0034470: ncRNA processing	2.00E-04
20	GO:0006650: glycerophospholipid metabolic process	2.00E-04
21	GO:0046168: glycerol-3-phosphate catabolic process	3.35E-04
22	GO:0009405: pathogenesis	3.35E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.84E-04
24	GO:0006072: glycerol-3-phosphate metabolic process	4.84E-04
25	GO:0006808: regulation of nitrogen utilization	6.44E-04
26	GO:0015994: chlorophyll metabolic process	6.44E-04
27	GO:0000304: response to singlet oxygen	8.14E-04
28	GO:0010236: plastoquinone biosynthetic process	8.14E-04
29	GO:0042793: transcription from plastid promoter	9.94E-04
30	GO:0010190: cytochrome b6f complex assembly	9.94E-04
31	GO:0015995: chlorophyll biosynthetic process	1.04E-03
32	GO:0016311: dephosphorylation	1.09E-03
33	GO:0042372: phylloquinone biosynthetic process	1.18E-03
34	GO:0030488: tRNA methylation	1.18E-03
35	GO:0009772: photosynthetic electron transport in photosystem II	1.39E-03
36	GO:0048829: root cap development	2.56E-03
37	GO:0019684: photosynthesis, light reaction	2.82E-03
38	GO:0009089: lysine biosynthetic process via diaminopimelate	2.82E-03
39	GO:0009073: aromatic amino acid family biosynthetic process	2.82E-03
40	GO:0005983: starch catabolic process	3.09E-03
41	GO:0010628: positive regulation of gene expression	3.37E-03
42	GO:0010207: photosystem II assembly	3.66E-03
43	GO:0019853: L-ascorbic acid biosynthetic process	3.95E-03
44	GO:0010030: positive regulation of seed germination	3.95E-03
45	GO:0031408: oxylipin biosynthetic process	5.22E-03
46	GO:0019915: lipid storage	5.22E-03
47	GO:0061077: chaperone-mediated protein folding	5.22E-03
48	GO:0006012: galactose metabolic process	5.89E-03
49	GO:0006810: transport	5.90E-03
50	GO:0009561: megagametogenesis	6.24E-03
51	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.60E-03
52	GO:0042631: cellular response to water deprivation	6.97E-03
53	GO:0008654: phospholipid biosynthetic process	8.10E-03
54	GO:0009567: double fertilization forming a zygote and endosperm	9.72E-03
55	GO:0006499: N-terminal protein myristoylation	1.42E-02
56	GO:0009834: plant-type secondary cell wall biogenesis	1.42E-02
57	GO:0032259: methylation	1.64E-02
58	GO:0006096: glycolytic process	2.62E-02
59	GO:0006396: RNA processing	3.05E-02
60	GO:0006412: translation	3.90E-02
61	GO:0055114: oxidation-reduction process	4.83E-02
62	GO:0006470: protein dephosphorylation	4.84E-02
63	GO:0008380: RNA splicing	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0005528: FK506 binding	6.53E-06
6	GO:0016279: protein-lysine N-methyltransferase activity	6.70E-06
7	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.07E-05
8	GO:0004033: aldo-keto reductase (NADP) activity	4.35E-05
9	GO:0019203: carbohydrate phosphatase activity	8.43E-05
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.43E-05
11	GO:0050308: sugar-phosphatase activity	8.43E-05
12	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.00E-04
13	GO:0047746: chlorophyllase activity	2.00E-04
14	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.00E-04
15	GO:0090729: toxin activity	3.35E-04
16	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	3.35E-04
17	GO:0017150: tRNA dihydrouridine synthase activity	3.35E-04
18	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	4.84E-04
19	GO:0016851: magnesium chelatase activity	4.84E-04
20	GO:0004659: prenyltransferase activity	6.44E-04
21	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.44E-04
22	GO:0004045: aminoacyl-tRNA hydrolase activity	6.44E-04
23	GO:2001070: starch binding	9.94E-04
24	GO:0008173: RNA methyltransferase activity	1.83E-03
25	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.06E-03
26	GO:0031072: heat shock protein binding	3.37E-03
27	GO:0019843: rRNA binding	4.37E-03
28	GO:0016491: oxidoreductase activity	5.00E-03
29	GO:0048038: quinone binding	8.50E-03
30	GO:0008168: methyltransferase activity	8.96E-03
31	GO:0016787: hydrolase activity	1.04E-02
32	GO:0005509: calcium ion binding	1.33E-02
33	GO:0003993: acid phosphatase activity	1.62E-02
34	GO:0051537: 2 iron, 2 sulfur cluster binding	1.99E-02
35	GO:0051287: NAD binding	2.15E-02
36	GO:0051082: unfolded protein binding	2.98E-02
37	GO:0003735: structural constituent of ribosome	3.48E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	1.70E-20
3	GO:0009534: chloroplast thylakoid	2.51E-11
4	GO:0009543: chloroplast thylakoid lumen	1.73E-09
5	GO:0009535: chloroplast thylakoid membrane	1.96E-09
6	GO:0009570: chloroplast stroma	6.52E-07
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.30E-07
8	GO:0031977: thylakoid lumen	6.50E-06
9	GO:0009654: photosystem II oxygen evolving complex	7.79E-06
10	GO:0019898: extrinsic component of membrane	2.70E-05
11	GO:0009579: thylakoid	3.58E-05
12	GO:0009941: chloroplast envelope	5.04E-05
13	GO:0031361: integral component of thylakoid membrane	8.43E-05
14	GO:0009508: plastid chromosome	1.58E-04
15	GO:0030095: chloroplast photosystem II	1.80E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.00E-04
17	GO:0033281: TAT protein transport complex	3.35E-04
18	GO:0010007: magnesium chelatase complex	3.35E-04
19	GO:0009331: glycerol-3-phosphate dehydrogenase complex	4.84E-04
20	GO:0009295: nucleoid	7.98E-04
21	GO:0010287: plastoglobule	4.14E-03
22	GO:0043234: protein complex	4.26E-03
23	GO:0042651: thylakoid membrane	4.89E-03
24	GO:0030529: intracellular ribonucleoprotein complex	1.10E-02
25	GO:0031969: chloroplast membrane	1.16E-02
26	GO:0005840: ribosome	1.56E-02