co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:1904215: regulation of protein import into chloroplast stroma	0.00E+00
3	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
4	GO:0009661: chromoplast organization	0.00E+00
5	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
6	GO:0006720: isoprenoid metabolic process	0.00E+00
7	GO:0048870: cell motility	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0015822: ornithine transport	0.00E+00
10	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
11	GO:0071000: response to magnetism	0.00E+00
12	GO:0009583: detection of light stimulus	0.00E+00
13	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
14	GO:0032928: regulation of superoxide anion generation	0.00E+00
15	GO:0046294: formaldehyde catabolic process	0.00E+00
16	GO:0016093: polyprenol metabolic process	0.00E+00
17	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
18	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.29E-06
19	GO:0009150: purine ribonucleotide metabolic process	1.48E-05
20	GO:0016120: carotene biosynthetic process	9.36E-05
21	GO:0010117: photoprotection	9.36E-05
22	GO:0046283: anthocyanin-containing compound metabolic process	9.36E-05
23	GO:0009229: thiamine diphosphate biosynthetic process	9.36E-05
24	GO:0055114: oxidation-reduction process	1.35E-04
25	GO:0009117: nucleotide metabolic process	1.36E-04
26	GO:0009228: thiamine biosynthetic process	1.36E-04
27	GO:0006555: methionine metabolic process	1.36E-04
28	GO:0010190: cytochrome b6f complex assembly	1.36E-04
29	GO:0033365: protein localization to organelle	1.36E-04
30	GO:0016226: iron-sulfur cluster assembly	1.69E-04
31	GO:0019509: L-methionine salvage from methylthioadenosine	1.85E-04
32	GO:0019346: transsulfuration	3.02E-04
33	GO:0072387: flavin adenine dinucleotide metabolic process	3.02E-04
34	GO:0071461: cellular response to redox state	3.02E-04
35	GO:0032956: regulation of actin cytoskeleton organization	3.02E-04
36	GO:0048438: floral whorl development	3.02E-04
37	GO:0000066: mitochondrial ornithine transport	3.02E-04
38	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	3.02E-04
39	GO:0006567: threonine catabolic process	3.02E-04
40	GO:0016487: farnesol metabolic process	3.02E-04
41	GO:0016031: tRNA import into mitochondrion	3.02E-04
42	GO:0019343: cysteine biosynthetic process via cystathionine	3.02E-04
43	GO:0043407: negative regulation of MAP kinase activity	3.02E-04
44	GO:0071266: 'de novo' L-methionine biosynthetic process	3.02E-04
45	GO:0099402: plant organ development	6.60E-04
46	GO:0010220: positive regulation of vernalization response	6.60E-04
47	GO:2000071: regulation of defense response by callose deposition	6.60E-04
48	GO:0048571: long-day photoperiodism	6.60E-04
49	GO:0006996: organelle organization	6.60E-04
50	GO:1904143: positive regulation of carotenoid biosynthetic process	6.60E-04
51	GO:0016122: xanthophyll metabolic process	6.60E-04
52	GO:0010343: singlet oxygen-mediated programmed cell death	6.60E-04
53	GO:1901529: positive regulation of anion channel activity	6.60E-04
54	GO:0080005: photosystem stoichiometry adjustment	6.60E-04
55	GO:2000030: regulation of response to red or far red light	6.60E-04
56	GO:0010617: circadian regulation of calcium ion oscillation	6.60E-04
57	GO:0007163: establishment or maintenance of cell polarity	6.60E-04
58	GO:0006790: sulfur compound metabolic process	8.22E-04
59	GO:0009785: blue light signaling pathway	9.29E-04
60	GO:1901672: positive regulation of systemic acquired resistance	1.07E-03
61	GO:0031929: TOR signaling	1.07E-03
62	GO:0071492: cellular response to UV-A	1.07E-03
63	GO:0006696: ergosterol biosynthetic process	1.07E-03
64	GO:0006760: folic acid-containing compound metabolic process	1.07E-03
65	GO:0010351: lithium ion transport	1.07E-03
66	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.07E-03
67	GO:1902448: positive regulation of shade avoidance	1.07E-03
68	GO:0034051: negative regulation of plant-type hypersensitive response	1.07E-03
69	GO:0006013: mannose metabolic process	1.07E-03
70	GO:0009853: photorespiration	1.18E-03
71	GO:2000377: regulation of reactive oxygen species metabolic process	1.44E-03
72	GO:0009963: positive regulation of flavonoid biosynthetic process	1.53E-03
73	GO:2001141: regulation of RNA biosynthetic process	1.53E-03
74	GO:0009647: skotomorphogenesis	1.53E-03
75	GO:0009399: nitrogen fixation	1.53E-03
76	GO:1901332: negative regulation of lateral root development	1.53E-03
77	GO:1902347: response to strigolactone	2.06E-03
78	GO:0000956: nuclear-transcribed mRNA catabolic process	2.06E-03
79	GO:0034613: cellular protein localization	2.06E-03
80	GO:0006542: glutamine biosynthetic process	2.06E-03
81	GO:0070534: protein K63-linked ubiquitination	2.06E-03
82	GO:0006545: glycine biosynthetic process	2.06E-03
83	GO:0071486: cellular response to high light intensity	2.06E-03
84	GO:0019464: glycine decarboxylation via glycine cleavage system	2.06E-03
85	GO:0009765: photosynthesis, light harvesting	2.06E-03
86	GO:0006221: pyrimidine nucleotide biosynthetic process	2.06E-03
87	GO:0006546: glycine catabolic process	2.06E-03
88	GO:0009649: entrainment of circadian clock	2.06E-03
89	GO:0016117: carotenoid biosynthetic process	2.44E-03
90	GO:0030041: actin filament polymerization	2.63E-03
91	GO:0098719: sodium ion import across plasma membrane	2.63E-03
92	GO:0010118: stomatal movement	2.64E-03
93	GO:0006520: cellular amino acid metabolic process	2.84E-03
94	GO:0009658: chloroplast organization	2.87E-03
95	GO:0000060: protein import into nucleus, translocation	3.24E-03
96	GO:0006301: postreplication repair	3.24E-03
97	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.24E-03
98	GO:0016070: RNA metabolic process	3.24E-03
99	GO:0060918: auxin transport	3.24E-03
100	GO:0031053: primary miRNA processing	3.24E-03
101	GO:1901371: regulation of leaf morphogenesis	3.24E-03
102	GO:0007035: vacuolar acidification	3.24E-03
103	GO:0010310: regulation of hydrogen peroxide metabolic process	3.90E-03
104	GO:0010077: maintenance of inflorescence meristem identity	3.90E-03
105	GO:0080036: regulation of cytokinin-activated signaling pathway	3.90E-03
106	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.90E-03
107	GO:0010076: maintenance of floral meristem identity	3.90E-03
108	GO:0010016: shoot system morphogenesis	3.90E-03
109	GO:0009396: folic acid-containing compound biosynthetic process	4.60E-03
110	GO:0051510: regulation of unidimensional cell growth	4.60E-03
111	GO:0050790: regulation of catalytic activity	4.60E-03
112	GO:0010161: red light signaling pathway	4.60E-03
113	GO:0009704: de-etiolation	5.35E-03
114	GO:0000028: ribosomal small subunit assembly	5.35E-03
115	GO:0050821: protein stabilization	5.35E-03
116	GO:0045010: actin nucleation	5.35E-03
117	GO:0009231: riboflavin biosynthetic process	5.35E-03
118	GO:0048564: photosystem I assembly	5.35E-03
119	GO:0045292: mRNA cis splicing, via spliceosome	5.35E-03
120	GO:0001522: pseudouridine synthesis	5.35E-03
121	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.35E-03
122	GO:0071482: cellular response to light stimulus	6.13E-03
123	GO:0000902: cell morphogenesis	6.95E-03
124	GO:0098656: anion transmembrane transport	6.95E-03
125	GO:0046916: cellular transition metal ion homeostasis	6.95E-03
126	GO:0010043: response to zinc ion	7.65E-03
127	GO:0051453: regulation of intracellular pH	7.80E-03
128	GO:1900426: positive regulation of defense response to bacterium	7.80E-03
129	GO:0009638: phototropism	7.80E-03
130	GO:0035999: tetrahydrofolate interconversion	7.80E-03
131	GO:0015031: protein transport	8.43E-03
132	GO:0000103: sulfate assimilation	8.70E-03
133	GO:0009688: abscisic acid biosynthetic process	8.70E-03
134	GO:0009641: shade avoidance	8.70E-03
135	GO:0006535: cysteine biosynthetic process from serine	8.70E-03
136	GO:0034599: cellular response to oxidative stress	8.77E-03
137	GO:0006879: cellular iron ion homeostasis	9.63E-03
138	GO:0006352: DNA-templated transcription, initiation	9.63E-03
139	GO:0009682: induced systemic resistance	9.63E-03
140	GO:0045037: protein import into chloroplast stroma	1.06E-02
141	GO:0010582: floral meristem determinacy	1.06E-02
142	GO:0009640: photomorphogenesis	1.08E-02
143	GO:0010075: regulation of meristem growth	1.16E-02
144	GO:0010628: positive regulation of gene expression	1.16E-02
145	GO:0048440: carpel development	1.26E-02
146	GO:0010039: response to iron ion	1.37E-02
147	GO:0000162: tryptophan biosynthetic process	1.48E-02
148	GO:0006487: protein N-linked glycosylation	1.59E-02
149	GO:0019344: cysteine biosynthetic process	1.59E-02
150	GO:0010431: seed maturation	1.82E-02
151	GO:0007005: mitochondrion organization	1.95E-02
152	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.95E-02
153	GO:0006012: galactose metabolic process	2.07E-02
154	GO:0009693: ethylene biosynthetic process	2.07E-02
155	GO:0000398: mRNA splicing, via spliceosome	2.41E-02
156	GO:0015991: ATP hydrolysis coupled proton transport	2.46E-02
157	GO:0006662: glycerol ether metabolic process	2.59E-02
158	GO:0006814: sodium ion transport	2.73E-02
159	GO:0042752: regulation of circadian rhythm	2.73E-02
160	GO:0009646: response to absence of light	2.73E-02
161	GO:0009058: biosynthetic process	2.76E-02
162	GO:0008654: phospholipid biosynthetic process	2.87E-02
163	GO:0009851: auxin biosynthetic process	2.87E-02
164	GO:0010193: response to ozone	3.01E-02
165	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.01E-02
166	GO:0002229: defense response to oomycetes	3.01E-02
167	GO:0008152: metabolic process	3.17E-02
168	GO:0010090: trichome morphogenesis	3.31E-02
169	GO:0030163: protein catabolic process	3.31E-02
170	GO:0006914: autophagy	3.46E-02
171	GO:0071805: potassium ion transmembrane transport	3.61E-02
172	GO:0016579: protein deubiquitination	3.76E-02
173	GO:0016126: sterol biosynthetic process	3.92E-02
174	GO:0042128: nitrate assimilation	4.24E-02
175	GO:0006906: vesicle fusion	4.24E-02
176	GO:0048573: photoperiodism, flowering	4.40E-02
177	GO:0006950: response to stress	4.40E-02
178	GO:0018298: protein-chromophore linkage	4.73E-02
179	GO:0006979: response to oxidative stress	4.87E-02
180	GO:0000160: phosphorelay signal transduction system	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
2	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0004789: thiamine-phosphate diphosphorylase activity	0.00E+00
5	GO:0004780: sulfate adenylyltransferase (ADP) activity	0.00E+00
6	GO:0042030: ATPase inhibitor activity	0.00E+00
7	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
8	GO:0052670: geraniol kinase activity	0.00E+00
9	GO:0052668: farnesol kinase activity	0.00E+00
10	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
11	GO:0045436: lycopene beta cyclase activity	0.00E+00
12	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
13	GO:0008902: hydroxymethylpyrimidine kinase activity	0.00E+00
14	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
15	GO:0052671: geranylgeraniol kinase activity	0.00E+00
16	GO:0008972: phosphomethylpyrimidine kinase activity	0.00E+00
17	GO:0047627: adenylylsulfatase activity	1.48E-07
18	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.48E-05
19	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	3.30E-05
20	GO:0019707: protein-cysteine S-acyltransferase activity	3.02E-04
21	GO:0004121: cystathionine beta-lyase activity	3.02E-04
22	GO:0051996: squalene synthase activity	3.02E-04
23	GO:0008732: L-allo-threonine aldolase activity	3.02E-04
24	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	3.02E-04
25	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	3.02E-04
26	GO:0004123: cystathionine gamma-lyase activity	3.02E-04
27	GO:0033549: MAP kinase phosphatase activity	3.02E-04
28	GO:0033984: indole-3-glycerol-phosphate lyase activity	3.02E-04
29	GO:0004793: threonine aldolase activity	3.02E-04
30	GO:0016783: sulfurtransferase activity	3.02E-04
31	GO:0071949: FAD binding	4.52E-04
32	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.60E-04
33	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	6.60E-04
34	GO:0000064: L-ornithine transmembrane transporter activity	6.60E-04
35	GO:0004046: aminoacylase activity	6.60E-04
36	GO:0015266: protein channel activity	9.29E-04
37	GO:0032403: protein complex binding	1.07E-03
38	GO:0003935: GTP cyclohydrolase II activity	1.07E-03
39	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	1.07E-03
40	GO:0004180: carboxypeptidase activity	1.07E-03
41	GO:0003962: cystathionine gamma-synthase activity	1.07E-03
42	GO:0032947: protein complex scaffold	1.07E-03
43	GO:0004848: ureidoglycolate hydrolase activity	1.07E-03
44	GO:0000339: RNA cap binding	1.53E-03
45	GO:0009882: blue light photoreceptor activity	1.53E-03
46	GO:0009001: serine O-acetyltransferase activity	1.53E-03
47	GO:0000254: C-4 methylsterol oxidase activity	1.53E-03
48	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.53E-03
49	GO:0004792: thiosulfate sulfurtransferase activity	1.53E-03
50	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.06E-03
51	GO:0001053: plastid sigma factor activity	2.06E-03
52	GO:0004834: tryptophan synthase activity	2.06E-03
53	GO:0016987: sigma factor activity	2.06E-03
54	GO:0005496: steroid binding	2.63E-03
55	GO:0004356: glutamate-ammonia ligase activity	2.63E-03
56	GO:0016407: acetyltransferase activity	2.63E-03
57	GO:0008080: N-acetyltransferase activity	2.84E-03
58	GO:0016491: oxidoreductase activity	2.98E-03
59	GO:0016853: isomerase activity	3.05E-03
60	GO:0015081: sodium ion transmembrane transporter activity	3.24E-03
61	GO:0004605: phosphatidate cytidylyltransferase activity	3.24E-03
62	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.24E-03
63	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.50E-03
64	GO:0009927: histidine phosphotransfer kinase activity	3.90E-03
65	GO:0004559: alpha-mannosidase activity	3.90E-03
66	GO:0070300: phosphatidic acid binding	3.90E-03
67	GO:0008320: protein transmembrane transporter activity	4.60E-03
68	GO:0016621: cinnamoyl-CoA reductase activity	4.60E-03
69	GO:0008143: poly(A) binding	4.60E-03
70	GO:0035064: methylated histone binding	5.35E-03
71	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	5.35E-03
72	GO:0004034: aldose 1-epimerase activity	5.35E-03
73	GO:0003723: RNA binding	5.40E-03
74	GO:0005515: protein binding	6.02E-03
75	GO:0015078: hydrogen ion transmembrane transporter activity	6.13E-03
76	GO:0046914: transition metal ion binding	6.13E-03
77	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.61E-03
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.95E-03
79	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.95E-03
80	GO:0016787: hydrolase activity	8.52E-03
81	GO:0015386: potassium:proton antiporter activity	9.63E-03
82	GO:0046961: proton-transporting ATPase activity, rotational mechanism	9.63E-03
83	GO:0004129: cytochrome-c oxidase activity	9.63E-03
84	GO:0042802: identical protein binding	1.02E-02
85	GO:0005315: inorganic phosphate transmembrane transporter activity	1.16E-02
86	GO:0031072: heat shock protein binding	1.16E-02
87	GO:0009982: pseudouridine synthase activity	1.16E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	1.17E-02
89	GO:0043621: protein self-association	1.17E-02
90	GO:0005198: structural molecule activity	1.22E-02
91	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.27E-02
92	GO:0016887: ATPase activity	1.40E-02
93	GO:0004725: protein tyrosine phosphatase activity	1.48E-02
94	GO:0051536: iron-sulfur cluster binding	1.59E-02
95	GO:0005528: FK506 binding	1.59E-02
96	GO:0005506: iron ion binding	1.60E-02
97	GO:0043424: protein histidine kinase binding	1.71E-02
98	GO:0004176: ATP-dependent peptidase activity	1.82E-02
99	GO:0003824: catalytic activity	1.93E-02
100	GO:0051082: unfolded protein binding	2.09E-02
101	GO:0008514: organic anion transmembrane transporter activity	2.20E-02
102	GO:0004386: helicase activity	2.28E-02
103	GO:0047134: protein-disulfide reductase activity	2.33E-02
104	GO:0003713: transcription coactivator activity	2.59E-02
105	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.69E-02
106	GO:0004791: thioredoxin-disulfide reductase activity	2.73E-02
107	GO:0050662: coenzyme binding	2.73E-02
108	GO:0030170: pyridoxal phosphate binding	2.90E-02
109	GO:0048038: quinone binding	3.01E-02
110	GO:0004843: thiol-dependent ubiquitin-specific protease activity	3.01E-02
111	GO:0004197: cysteine-type endopeptidase activity	3.16E-02
112	GO:0015385: sodium:proton antiporter activity	3.31E-02
113	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.31E-02
114	GO:0008237: metallopeptidase activity	3.61E-02
115	GO:0008483: transaminase activity	3.61E-02
116	GO:0016168: chlorophyll binding	4.07E-02
117	GO:0008375: acetylglucosaminyltransferase activity	4.24E-02
118	GO:0008236: serine-type peptidase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.37E-11
2	GO:0005747: mitochondrial respiratory chain complex I	4.64E-10
3	GO:0009536: plastid	2.34E-04
4	GO:0005845: mRNA cap binding complex	3.02E-04
5	GO:0000152: nuclear ubiquitin ligase complex	3.02E-04
6	GO:0031932: TORC2 complex	3.02E-04
7	GO:0016604: nuclear body	5.34E-04
8	GO:0005846: nuclear cap binding complex	6.60E-04
9	GO:0031969: chloroplast membrane	8.92E-04
10	GO:0016605: PML body	1.07E-03
11	GO:0031931: TORC1 complex	1.07E-03
12	GO:0005737: cytoplasm	1.52E-03
13	GO:1990726: Lsm1-7-Pat1 complex	1.53E-03
14	GO:0005960: glycine cleavage complex	1.53E-03
15	GO:0045271: respiratory chain complex I	1.58E-03
16	GO:0033179: proton-transporting V-type ATPase, V0 domain	2.06E-03
17	GO:0009527: plastid outer membrane	2.06E-03
18	GO:0031372: UBC13-MMS2 complex	2.06E-03
19	GO:0009517: PSII associated light-harvesting complex II	2.06E-03
20	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.25E-03
21	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.63E-03
22	GO:0097526: spliceosomal tri-snRNP complex	2.63E-03
23	GO:0031209: SCAR complex	3.24E-03
24	GO:0005689: U12-type spliceosomal complex	3.90E-03
25	GO:0032580: Golgi cisterna membrane	4.25E-03
26	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	4.60E-03
27	GO:0071004: U2-type prespliceosome	5.35E-03
28	GO:0005688: U6 snRNP	5.35E-03
29	GO:0000421: autophagosome membrane	5.35E-03
30	GO:0031901: early endosome membrane	6.95E-03
31	GO:0005763: mitochondrial small ribosomal subunit	6.95E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.95E-03
33	GO:0009570: chloroplast stroma	7.75E-03
34	GO:0009535: chloroplast thylakoid membrane	9.37E-03
35	GO:0071013: catalytic step 2 spliceosome	9.63E-03
36	GO:0005764: lysosome	1.26E-02
37	GO:0031966: mitochondrial membrane	1.36E-02
38	GO:0005758: mitochondrial intermembrane space	1.59E-02
39	GO:0042651: thylakoid membrane	1.71E-02
40	GO:0016607: nuclear speck	1.79E-02
41	GO:0009941: chloroplast envelope	1.89E-02
42	GO:0031410: cytoplasmic vesicle	1.95E-02
43	GO:0010287: plastoglobule	2.48E-02
44	GO:0009523: photosystem II	2.87E-02
45	GO:0005759: mitochondrial matrix	3.28E-02
46	GO:0071944: cell periphery	3.31E-02
47	GO:0016021: integral component of membrane	3.45E-02
48	GO:0005643: nuclear pore	4.73E-02
49	GO:0009707: chloroplast outer membrane	4.73E-02